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Abdulla, Ghaleb

Publications and source records attributed to Abdulla, Ghaleb.

A hidden Markov model for population-level cervical cancer screening data

The Cancer Registry of Norway has been administrating a national cervical cancer screening program since 1992 by coordinating triennial cytology exam screenings for the female population between 25 and 69 years of age. Up to 80% of cancers are prevented through mass screening, but this comes at the expense of considerable screening activity and leads to overtreatment of clinically asymptomatic precancers. Here, we present a continuous-time, time-inhomogeneous hidden Markov model which was developed to understand the screening process and cervical cancer carcinogenesis in detail. By leveraging 1.7 million individual's multivariate time-series of medical exams performed over a 25-year period, we simultaneously estimate all model parameters. We show that an age-dependent model reflects the Norwegian screening program by comparing empirical survival curves from observed registry data and data simulated from the proposed model. The model can be generalized to include more detailed individual-level covariates as well as new types of screening exams. By utilizing individual screening histories and covariate data, the proposed model shows potential for improving strategies for cancer screening programs by personalizing recommended screening intervals.

59 BASIC BIOLOGICAL SCIENCES↗

ESGF Future Architecture Report (V.1.1)

This document reports the findings of the Earth System Grid Federation Future Architecture Face-to-Face Meeting held in the UK 5-7 November 2019, attended by technical representatives from the ESGF partner organisations. ESGF is an International federated archive that provides access to Earth science data. It is fundamentally a distributed file management system with its main function being data dissemination through the provision of services for efficient replication and search. It has been in operation for over ten years and has undergone continuous improvements and enhancements over this time span. The Future Architecture is a major review of the software system including a fundamental reassessment of its requirements with a view to develop a new overall system architecture. This has been initiated in the light of challenges around the maintenance of the existing software legacy and a changing technology landscape and practices in the communities it serves. The work is being carried out under the oversight of the ESGF Executive Committee1,2 and is coordinated activity between ESGF and the European IS-ENES3 project.

54 ENVIRONMENTAL SCIENCES↗