Adhikari, Laxman | Search NASA

DOE OSTI2024

Turbulence, Waves, and Taylor’s Hypothesis for Heliosheath Observations

Magnetic field fluctuations measured in the heliosheath by the Voyager spacecraft are often characterized as compressible, as indicated by a strong fluctuating component parallel to the mean magnetic field. However, the interpretation of the turbulence data faces the caveat that the standard Taylor’s hypothesis is invalid because the solar wind flow velocity in the heliosheath becomes subsonic and slower than the fast magnetosonic speed, given the contributions from hot pickup ions (PUIs) in the heliosheath. We attempt to overcome this caveat by introducing a 4D frequency-wavenumber spectral modeling of turbulence, which is essentially a decomposition of different wave modes following their respective dispersion relations. Isotropic Alfvén and fast mode turbulence are considered to represent the heliosheath fluctuations. We also include two dispersive fast wave modes derived from a three-fluid theory. We find that (1) magnetic fluctuations in the inner heliosheath are less compressible than previously thought, an isotropic turbulence spectral model with about 25% in compressible fluctuation power is consistent with the observed magnetic compressibility in the heliosheath; (2) the hot PUI component and the relatively cold solar wind ions induce two dispersive fast magnetosonic wave branches in the perpendicular propagation limit, PUI fast wave may account for the spectral bump near the proton gyrofrequency in the observable spectrum; (3) it is possible that the turbulence wavenumber spectrum is not Kolmogorov-like although the observed frequency spectrum has a −5/3 power-law index, depending on the partitioning of power among the various wave modes, and this partitioning may change with wavenumber.

79 ASTRONOMY AND ASTROPHYSICS↗

DOE OSTI2022

A high-throughput skim-sequencing approach for genotyping, dosage estimation and identifying translocations

The development of next-generation sequencing (NGS) enabled a shift from array-based genotyping to directly sequencing genomic libraries for high-throughput genotyping. Even though whole-genome sequencing was initially too costly for routine analysis in large populations such as breeding or genetic studies, continued advancements in genome sequencing and bioinformatics have provided the opportunity to capitalize on whole-genome information. As new sequencing platforms can routinely provide high-quality sequencing data for sufficient genome coverage to genotype various breeding populations, a limitation comes in the time and cost of library construction when multiplexing a large number of samples. Here we describe a high-throughput whole-genome skim-sequencing (skim-seq) approach that can be utilized for a broad range of genotyping and genomic characterization. Using optimized low-volume Illumina Nextera chemistry, we developed a skim-seq method and combined up to 960 samples in one multiplex library using dual index barcoding. With the dual-index barcoding, the number of samples for multiplexing can be adjusted depending on the amount of data required, and could be extended to 3,072 samples or more. Panels of doubled haploid wheat lines ( Triticum aestivum , CDC Stanley x CDC Landmark), wheat-barley ( T . aestivum x Hordeum vulgare ) and wheat-wheatgrass ( Triticum durum x Thinopyrum intermedium ) introgression lines as well as known monosomic wheat stocks were genotyped using the skim-seq approach. Bioinformatics pipelines were developed for various applications where sequencing coverage ranged from 1 × down to 0.01 × per sample. Using reference genomes, we detected chromosome dosage, identified aneuploidy, and karyotyped introgression lines from the skim-seq data. Leveraging the recent advancements in genome sequencing, skim-seq provides an effective and low-cost tool for routine genotyping and genetic analysis, which can track and identify introgressions and genomic regions of interest in genetics research and applied breeding programs.

60 APPLIED LIFE SCIENCES↗