Phytoplankton optical fingerprint libraries for development of phytoplankton ocean color satellite products
Explore the source record for details and available documents.
Michael W. Lomas↗
Engineering topics
Antonio Mannino
Publications and source records attributed to Antonio Mannino.
Quantification of Discharge-Specific Effects on Dissolved Organic Matter Export From Major Arctic Rivers From 1982 Through 2019
Long-term increases in Arctic river discharge have been well documented, and observations in the six largest Arctic rivers show strong positive correlations between dissolved organic carbon (DOC) concentration, river discharge, and chromophoric dissolved organic matter (CDOM) content. Here, observations of DOC and CDOM collected from 2009-2019 by the Arctic Great Rivers Observatory were used to estimate chromophoric DOC (CDOC) concentrations in the Kolyma, Lena, Mackenzie, Ob’, Yenisey, and Yukon Rivers. All rivers but the Mackenzie showed significant positive correlations between annual watershed runoff and the proportion of the DOC that is chromophoric. Historical estimates of DOC and CDOC export were calculated for 1982-2019 by extrapolating the DOC and CDOC concentration – discharge relationships from 2009-2019 as a hindcast modeled estimate. For the six rivers combined, modeled DOC and CDOC export increased, but CDOC increased faster than total DOC. The Lena and Ob’ Rivers showed significant increases in DOC export individually, with annual trends of 39.1 and 20.4 Gg C yr -1 respectively. November-April (winter) DOC and CDOC export increased in all rivers but the Yenisey, with the hindcast winter Kolyma export increasing by more than 20% per decade. There were no significant trends in discharge or associated DOC and CDOC fluxes during the observational period from 2009-2019; only when hindcasted values driven by changes in river discharge were analyzed did trends in DOC and CDOC emerge. This demonstrates how shifting seasonal distributions and increases in discharge can drive changes in DOC and CDOC concentrations and export, independent of other environmental factors.
carbon cycle↗
PACE Technical Report Series, Volume 11: The PACE Postlaunch Airborne eXperiment (PACE-PAX)
The Plankton, Aerosol, Cloud, ocean Ecosystem (PACE; https://pace.gsfc.nasa.gov) mission is NASA's latest and greatest effort to study the ocean-atmosphere system and build upon the legacy of previous satellite missions that have revolutionized our understanding of our home planet. By using advanced radiometric and polarimetric instruments to measure ocean color and key atmospheric variables, PACE aims to provide new insights into the complex interactions between the ocean, atmosphere, and biosphere. This information will be critical for improving our ability to model and predict changes in the Earth's climate, as well as to manage and conserve our planet's valuable natural resources. Performance assessments and science data product validation is a critical process for any Earth Science space-borne mission, as it involves assessing and verifying the quality of the data products generated by the mission while it is in orbit, as well as assigning uncertainties to these retrievals. More specifically, validation efforts are essential for assessing the accuracy of instrument data and the derived science products across varied spatial and temporal scales and ensuring their reliability and consistency with the mission's scientific goals and objectives. The overall plan for validation of PACE data is described in “PACE Science Data Product Validation Plan” (see, e.g., https://pace.gsfc.nasa.gov), and among range of post-launch activities, it describes the need and requirements for a post-launch airborne field campaign in support of PACE validation. This volume outlines the plans and requirements of the PACE Postlaunch Airborne eXperiment (PACE-PAX). The main goal of PACE-PAX is to gather validation and assessment data for the PACE mission, using a variety of airborne and ground-based assets. These assets will be coordinated to obtain complementary measurements of key ocean and atmospheric variables, such as ocean color, aerosols, and clouds. By collecting data from multiple sources, PACE-PAX will help to validate and refine the data products generated by the PACE mission, as well as to identify any potential errors or biases in the measurements. This will be essential for ensuring the accuracy and reliability of the PACE data products, and for maximizing the scientific value of the mission.
Kirk D Knobelspiesse↗
Remote Sensing of Dissolved Organic Carbon (DOC) Stocks, Fluxes and Transformations Along the Land-Ocean Aquatic Continuum: Advances, Challenges, and Opportunities
From stream headwaters to the deep ocean, dissolved organic carbon (DOC) is ubiquitous across the world’s aquatic systems, where it fulfills important biogeochemical and ecological functions. Importantly, DOC is a dynamic component of the carbon cycle and represents a global reservoir (mass of carbon) equivalent in size to the atmospheric CO 2 pool. The mobilization, transport, and transformations of DOC along the land-ocean aquatic continuum biogeochemically connect terrestrial landscapes, freshwater and marine ecosystems, and the atmosphere. As a result, DOC budgets are vulnerable to climate- and human-driven changes. Having the ability to quantify DOC stocks, fluxes, and transformations consistently and accurately in aquatic systems is therefore critical to our understanding of DOC’s functions in the environment and of their susceptibility to change. In recent years, optical techniques and synoptic earth observations have opened new doors to achieve this objective on a global scale. In this review, we explore how in situ measurements, earth observations, and the models they inform have facilitated the large-scale quantification of DOC stocks, fluxes, and transformations along the land-ocean aquatic continuum and how they have helped shape our current understanding of the global DOC cycle. The review also explores the limitations and challenges we still face today, and discusses how upcoming and future sensors are expected to provide new insights into our understanding of the global DOC cycle.
Dissolved organic carbon↗
A Compilation of Global Bio-Optical in Situ Data for Ocean Colour Satellite Applications – Version Three
A global in situ data set for validation of ocean colour products from the ESA Ocean Colour Climate Change Initiative (OC-CCI) is presented. This version of the compilation, starting in 1997, now extends to 2021, which is important for the validation of the most recent satellite optical sensors such as Sentinel 3B OLCI and NOAA-20 VIIRS. The data set comprises in situ observations of the following variables: spectral remote-sensing reflectance, concentration of chlorophyll-a, spectral inherent optical properties, spectral diffuse attenuation coefficient, and total suspended matter. Data were obtained from multi-project archives acquired via open internet services or from individual projects acquired directly from data providers. Methodologies were implemented for homogenization, quality control, and merging of all data. Minimal changes were made on the original data, other than conversion to a standard format, elimination of some points, after quality control and averaging of observations that were close in time and space. The result is a merged table available in text format. Overall, the size of the data set grew with 148 432 rows, with each row representing a unique station in space and time (cf. 136 250 rows in previous version; Valente et al., 2019). Observations of remote-sensing reflectance increased to 68 641 (cf. 59 781 in previous version; Valente et al., 2019). There was also a near tenfold increase in chlorophyll data since 2016. Metadata of each in situ measurement (original source, cruise or experiment, principal investigator) are included in the final table. By making the metadata available, provenance is better documented and it is also possible to analyse each set of data separately.
ocean color↗
The Transformation and Export of Organic Carbon Across an Arctic River-Delta-Ocean Continuum
The Arctic Ocean is surrounded by land that feeds highly seasonal rivers with water enriched in high concentrations of dissolved and particulate organic carbon (DOC and POC). Explicit estimates of the flux of organic carbon across the land-ocean interface are difficult to quantify and many interdependent processes makes source attribution difficult. A high-resolution 3-D biogeochemical model was built for the lower Yukon River and coastal ocean to estimate biogeochemical cycling across the land-ocean continuum. The model solves for complex reactions related to organic carbon transformation, including mechanistic photodegradation and multi-reactivity microbial processing, DOC to POC flocculation, and phytoplankton dynamics. The baseline DOC and POC flux out of the delta from April to September 2019, was 977 and 536 Gg C (~80% of the annual total), but only 50% of the DOC and 25% of the POC exited the plume across the 10 m isobath. Microbial breakdown of DOC accounted for a net loss of 168 Gg C (17% of delta export) within the plume and photodegradation accounted for a net loss of 46.6 Gg C DOC (5% of delta export) in 2019. Flocculation decreased the total organic carbon flux by only 6.4 Gg C (~1%), while POC sinking accounted for 63.3 Gg C (10%) settling in the plume. The loss of chromophoric dissolved organic matter (CDOM) due to photodegradation increased the light available for phytoplankton growth throughout the coastal ocean, demonstrating the secondary effects that organic carbon reactions can have on biological processes and the net coastal carbon flux.
Land-Ocean Continuum↗
Arctic Biogeochemical and Optical Properties of Dissolved Organic Matter Across River to Sea Gradients
Arctic landscapes are warming and becoming wetter due to changes in precipitation and the timing of snowmelt which consequently alters seasonal runoff and river discharge patterns. These changes in hydrology lead to increased mobilization and transport of terrestrial dissolved organic matter (DOM) to Arctic coastal seas where significant impacts on biogeochemical cycling can occur. Here, we present measurements of dissolved organic carbon (DOC) and chromophoric DOM (CDOM) in the Yukon River-to-Bering Sea system and two river plumes on the Alaska North Slope which flow into the Beaufort Sea. Our sampling characterized optical and biogeochemical properties of DOM during high and low river discharge periods for the Yukon River-Bering Sea system. The average DOC concentration at the multiple Yukon River mouths ranged from a high of 10.36 mg C L-1 during the ascending limb of the 2019 freshet (late May), 6.4 mg C L-1 during the descending limb of the 2019 freshet (late June), and a low of 3.86 mg C L-1 during low river discharge in August 2018. CDOM absorption coefficient at 412 nm (aCDOM(412)) averaged 8.23 m-1, 5.07 m-1, and 1.9 m-1, respectively. Several approaches to model DOC concentration based on its relationship with CDOM properties demonstrated cross-system seasonal and spatial robustness for these Arctic coastal systems despite spanning an order of magnitude decrease in DOC concentration from the lower Yukon River to the Northern Bering Sea as well as the North Slope systems. “Snapshot” fluxes of DOC and CDOM across the Yukon River Delta to Norton Sound were calculated from our measurements and modeled water fluxes forced with upstream USGS river gauge data. Our findings suggest that during high river flow, DOM reaches the delta largely unaltered by inputs or physical and biogeochemical processing and that the transformations of Yukon River DOM largely occur in the plume. However, during low summer discharge, multiple processes including local precipitation events, microbial decomposition, photochemistry, and likely others can alter the DOM properties within the lower Yukon River and Delta prior to flowing into Norton Sound.
Arctic↗
Aquatic Primary Productivity Field Protocols for Satellite Validation and Model Synthesis
In 2018, a working group sponsored by the NASA Plankton, Aerosol, Cloud, and ocean Ecosystem (PACE) project, in conjunction with the International Ocean Colour Coordinating Group (IOCCG), European Organization for the Exploitation of Meteorological Satellites (EUMETSAT), and Japan Aerospace Exploration Agency (JAXA), was assembled with the aim to develop community consensus on multiple methods for measuring aquatic primary productivity used for satellite validation and model synthesis. A workshop to commence the working group efforts was held December 5–7, 2018, at the University Space Research Association headquarters in Columbia, MD, USA, bringing together 26 active researchers from 16 institutions. In this document, we discuss and develop the workshop findings as they pertain to primary productivity measurements, including the essential issues, nuances, definitions, scales, uncertainties, and ultimately best practices for data collection across multiple methodologies.
ocean color↗
Estimates of Diurnal and Daily Net Primary Productivity Using the Geostationary Ocean Color Imager (GOCI) Data
For the past three decades, polar-orbiting ocean color satellites have provided local, regional to global scale estimates of oceanic net primary production that have greatly aided studies of ocean carbon cycling, food web dynamics and climate change. Despite considerable progress, accurate estimates of daily ocean productivity from space have not been realized because polar-orbiting satellites are unable to account for variations in phytoplankton physiology and carbon fixation rates from changing incident irradiance levels over the course of the day. Here we have attempted to exploit the unique short-temporal measurements provided by the Korean Geostationary Ocean Color Imager (GOCI), to obtain for the first time, diurnal and daily measurements of surface- and euphotic-column integrated Net Primary Productivity (NPP). These estimates are based on the Absorption Based Productivity Model (AbPM), and are calibrated with a bio-optical database of measurements made at different times of the day during the Korea-US Ocean Color (KORUS-OC) cruise in May–June 2016. Photo-physiological rate estimates, varied across different water types encountered around the Korean Peninsula, but on account of their limited number, were regionally scaled through the use of dynamic optical-biogeochemical (O-BGC) Biomes. Comparisons of GOCI derived estimates of daily and weekly integrated NPP against in-situ measurements, clearly underscore the superiority of geostationary over polar-orbiting ocean color satellites, which consider the strong short-term fluctuations in phytoplankton light absorption and incident irradiance fields over the course of the day.
Diurnal productivity↗
Impact of Growth Phase, Pigment Adaptation, and Climate Change Conditions on the Cellular Pigment and Carbon Content of Fifty‐One Phytoplankton Isolates
Owing to their importance in aquatic ecosystems, the demand for models that estimate phytoplankton biomass and community composition in the global ocean has increased over the last decade. Moreover, the impacts of climate change, including elevated carbon dioxide (CO2), increased stratification, and warmer sea surface temperatures, will likely shape phytoplankton community composition in the global ocean. Chemotaxonomic methods are useful for modeling phytoplankton community composition from marker pigments normalized to chlorophyll a (Chl a). However, photosynthetic pigments, particularly Chl a, are sensitive to nutrient and light conditions. Cellular carbon is less sensitive, so using carbon biomass instead may provide an alternative approach. To this end, cellular pigment and carbon concentrations were measured in 51 strains of globally relevant, cultured phytoplankton. Pigment-to-Chl a and pigment-to-carbon ratios were computed for each strain. For 25 strains, measurements were taken during two growth phases. While some differences between growth phases were observed, they did not exceed within class differences. Multiple strains of Amphidinium carterae, Ditylum brightwellii and Heterosigma akashiwo were measured to determine whether time in culture influenced pigment and carbon composition. No appreciable trends in cellular pigment or carbon content were observed. Lastly, the potential impact of climate change conditions on the pigment ratios was assessed using a multistressor experiment that included increased mean light, temperature, and elevated pCO2 on three species: Thalassiosira oceanica, Ostreococcus lucimarinus, and Synechococcus. The largest differences were observed in the pigment-to-carbon ratios, while the marker pigments largely covaried with Chl a. The implications of these observations to chemotaxonomic applications are discussed.
Pigments↗
The Impacts of Freshwater Input and Surface Wind Velocity on the Strength and Extent of a Large High Latitude River Plume
Arctic Ocean physical and biogeochemical properties are strongly influenced by freshwater input from land and through the Bering Strait, where the mean currents transport water northward from the Bering Sea. The Yukon River is one of the largest rivers in North America and the Arctic, contributing large quantities of freshwater and terrigenous material to the coastal ocean in the northern Bering Sea. However, a detailed analysis of the coastal hydrodynamics at the outflow of the river has not been conducted in this remote but regionally important river. A three-dimensional hydrodynamic model was built to represent the lower Yukon River and coastal ocean for the ice-free months in 7 years. On average, a large anticyclonic eddy persisted at the main outflow of the Yukon that recirculates water back toward the coast where the currents converge to form a mean northward transport along the delta. Interannual spatial variance in salinity was relatively small, while there was substantial variance in u and v current velocity. u velocity spatial variance was correlated to the volume of freshwater discharge across years, while v velocity spatial variance was correlated to the N–S wind velocity. During strong wind events, plume structure was substantially altered: southerly winds deepened the plume and enhanced northward transport, while northerly winds shoaled and strengthened the pycnocline, and reversed the flow toward the south. The variability in plume dispersion on short time scales due to wind forcing has implications for where terrigenous material is processed in and settles out of the water column.
river plume↗
Assessing Net Growth of Phytoplankton Biomass on Hourly to Annual Timescales Using the Geostationary Ocean Color Instrument
Questions of whether diurnal changes in carbon fixation affect the global carbon budget cannot be answered using the present generation of polar orbiting ocean color sensors that can only retrieve one image daily. Here, we present novel satellite-derived indices of chlorophyll-based production based on the Geostationary Ocean Color Imager (GOCI), whose hourly imaging capability offer the potential for direct estimates of net phytoplankton growth over hourly to seasonal time scales. Our results reveal large variations in net chlorophyll growth in the GOCI study region, both over the day and between seasons. Hourly changes in chlorophyll concentration are highest during spring while growth rates show maxima during the winter. We show seasonal relationships between growth and photon flux. Our study suggests that Geostationary Ocean Color data can be used to constrain phytoplankton productivity on diurnal time scales and be an essential tool to better understand diurnal growth patterns over large spatial regions.
Joseph E. Salisbury↗
Preferential Loss of Yukon River Delta Colored Dissolved Organic Matter under Nutrient Replete Conditions
The Yukon River exports a large amount of dissolved organic carbon (DOC), much of which is colored, absorbing visible and ultraviolet light. Yukon River water typically has low total dissolved nitrogen (TDN), with an average DOC : TDN ratio of 21.1 (mol C mol N−1) ~ 200 km upstream from the coast at Pilot Station, Alaska. TDN has been correlated to the bioavailability of DOC, but a direct estimate of the dependence of DOC reactivity on nutrient availability has not been conducted in the Yukon River delta. The biodegradability of DOC and colored dissolved organic matter (CDOM) was assessed along a gradient within the Yukon River delta and into the coastal ocean. Samples were dark incubated at 20C and half of the incubations were amended with inorganic nutrients. At five time points through 27 d, CDOM absorption and DOC concentration were measured. Initial DOC concentration was 113–830 μmol C L−1 and CDOM absorption at 443 nm (a443) ranged from 0.16 to 7.8 m−1 from the ocean to a high CDOM lake. DOC was relatively unreactive, with 3–6% of DOC degrading in riverine samples and little difference between nutrient amended and control incubations. Control river delta a443 decreased 3–10%, while nutrient amended treatments saw a 6–22% decline over 27 d. In the nutrient amended riverine stations, CDOM absorption loss was greater at blue wavelengths and CDOM degradation was greater than total DOC loss. DOC was resistant to biodegradation in both nutrient amended and ambient conditions, while CDOM was preferentially degraded when nutrients were replete.
J Blake Clark↗
EXPORTS Measurements and Protocols for the NE Pacific Campaign
EXport Processes in the Ocean from Remote Sensing (EXPORTS) is a large-scale NASA-led and NSF co-funded field campaign that will provide critical information for quantifying the export and fate of upper ocean net primary production (NPP) using satellite information and state of the art technology.
Ivona Cetinić↗
PACE Technical Report Series, Volume 8: PACE Science Data Product Selection Plan
This document describes the flow of and process for the selection and implementation of science data products for the Plankton, Aerosol, Cloud, ocean Ecosystem (PACE) mission. Its scope encompasses threshold/standard mission products and baseline/advanced mission products.
Ivona Cetinic↗
PACE Technical Report Series, Volume 9: PACE Applications Plan
This volume presents PACE mission’s plan for development and execution of a PACE Applications Program. NASA maintains an Applied Sciences Program (https://appliedsciences.nasa.gov) to help institutions and individuals make better decisions about our environment, food, water, health and safety through the use of NASA data. In 2016, NASA Headquarters began requiring all flight projects to implement a Project Applications Program with the purpose of: (a) scoping and developing applied research and applications as part of the overall mission concept; (b) demonstrating the project’s benefit to society and contributions to the achievement of societal outcomes; (c) identifying specific product applications and Communities of Potential to better understand the impacts and benefit from using project products and models; (d) increasing the utility of data products; and (e) fostering a Community of Practice who can work with the project throughout the emission life cycle. In response to and in support of this NASA Headquarters directive, the PACE mission developed this PACE Applications Program Plan. While consideration of applications and applied sciences has always been embedded into PACE, the Applications Program truly kicked into high gear in December 2019 (see https://pace.gsfc.nasa.gov). At the time of this writing, the number of PACE Early Adopters has already reached 20. And, the first PACE Applications Workshop will be held (virtually) in late September 2020, with 500 attendees registered. My congratulations and thanks to the PACE Applications Program team for a tremendous first year.
Maria Tzortziou↗
Impacts of Water Clarity Variability on Temperature and Biogeochemistry in the Chesapeake Bay
Estuarine water clarity depends on the concentrations of aquatic constituents, such as colored dissolved organic matter, phytoplankton, inorganic suspended solids, and detritus, which are influenced by variations in riverine inputs. These constituents directly affect temperature because when water is opaque, sunlight heats a shallower layer of the water compared to when it is clear. Despite the importance of accurately predicting temperature variability, many numerical modeling studies do not adequately account for this key process. In this study, we quantify the effect of water clarity on heating by comparing two simulations of a hydrodynamic-biogeochemical model of the Chesapeake Bay for the years 2001–2005, in which (1) water clarity is constant in space and time for the computation of solar heating, compared to (2) a simulation where water clarity varies with modeled concentrations of light-attenuating materials. In the variable water clarity simulation, the water is more opaque, particularly in the northern region of the Bay. This decrease in water clarity reduces the total heat, phytoplankton, and nitrate throughout the Bay. During the spring and summer months, surface temperatures in the northern Bay are warmer by 0.1 °C and bottom temperatures are colder by 0.2 °C in the variable light attenuation simulation. Warmer surface temperatures encourage phytoplankton growth and nutrient uptake near the head of the Bay, and fewer nutrients are transported downstream. These impacts are greater during higher river flow years, when differences in temperature, nutrients, phytoplankton, and zooplankton extend further seaward compared to other years. This study demonstrates the consequences of utilizing different light calculations for estuarine heating and biogeochemistry.
water clarity↗
150 Shades of Green: Using the Full Spectrum of Remote Sensing Reflectance to Elucidate Color Shifts in the Ocean
This article proposes a simple and intuitive classification system by which to define full spectral remote sensing reflectance (Rrs(λ)) data with a quantitative output that enables a more manageable handling of spectral information for aquatic science applications. The weighted harmonic mean of the Rrs(λ) wavelengths outputs an Apparent Visible Wavelength (in units of nanometers), representing a one-dimensional geophysical metric of color that is inherently correlated to spectral shape. This dimensionality reduction of spectral information combined with the output along a continuum of wavelength values offers a robust and user-friendly means to describe and analyze spectral Rrs(λ) in terms of spatial and temporal trends and variability. The uncertainty in the algorithm's estimation of spectral shape is demonstrated on a global scale, in addition to the utility of the algorithm to discern spectral-spatial-temporal trends in the ocean, on a per-pixel basis for the entire 22 year continuous ocean color (SeaWiFS and MODIS-Aqua) time-series. This technique can be applied to datasets of varying multi- and hyper-spectral resolutions, providing continuity between heritage and future satellite sensors, and further enabling an effective means of elucidating similarities or differences in complex spectral signatures within the constraints of two dimensions. This straightforward means of conceptualizing multi-dimensional variability can help maximize the potential of the spectral information embedded in remote sensing data.
ocean color↗