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Assaf Anyamba

Publications and source records attributed to Assaf Anyamba.

At least 19 records
All sourcesNASA NTRSDOE OSTI
NASA NTRS2022

Climate Conditions During a Rift Valley Fever Post-epizootic Period in Free State, South Africa, 2014–2019

Rift Valley fever virus (RVFV) activity in Southern Africa tends to occur during periods of sustained elevated rainfall, cooler than normal conditions, and abundant vegetation cover creating ideal conditions for the increase and propagation of populations of RVFV mosquito vectors. These climatic and ecological conditions are modulated by large-scale tropical-wide El Niño–Southern Oscillation (ENSO) phenomena. The aim of this 5-year study was to investigate climatic conditions during Rift Valley fever “post-epizootic” period in Free State province of the Republic of South Africa, which historically experienced the largest RVF outbreaks in this country. We collected satellite-derived rainfall, land surface temperature (LST), and normalized difference vegetation index (NDVI) data since 2014 to understand broad environmental conditions in the years following a period of sustained and widespread large RVF outbreaks (2008–2011) in the region. We found this post-epizootic/interepizootic period to be characterized by below-normal rainfall (~-500 mm), above LSTs (~+12°C), depressed NDVI (60% below normal), and severe drought as manifested particularly during the 2015–2016 growing season. Such conditions reduce the patchwork of appropriate habitats available for emergence of RVFV vectors and diminish chances of RVFV activity. However, the 2016–2017 growing season saw a marked return to somewhat wetter conditions without any reported RVFV transmission. In general, the aggregate vector collections during this 5-year period follow patterns observed in climate measurements. During the 2017–2018 growing season, late and seasonally above average rainfall resulted in a focal RVF outbreak in one location in the study region. This unanticipated event is an indicator of cryptic RVF activity during post-epizootic period and may be a harbinger of RVFV activity in the coming years.

climate variability↗
NASA NTRS2022

Scraping Unstructured Data to Explore the Relationship between Rainfall Anomalies and Vector-Borne Disease Outbreaks

According to the World Health Organization (WHO), vector-borne diseases such as malaria and dengue account for 17% of all infectious disease cases and lead to more than 700,000 deaths per year. Tracking and predicting the spread of vector-borne diseases is a vital task that could save hundreds of thousands of lives annually. Oftentimes, the first reports of vector-borne disease outbreaks occur through emails and online reporting systems long before they are officially documented. Tracking and predicting the emergence and spread of vector-borne disease outbreaks requires extracting data from these unstructured sources in combination with historical weather and climate data to understand the underlying background triggers and disease dynamics. In this work, we develop a data extraction pipeline for the online outbreak reporting website ProMED-mail that utilizes a web scraper, transformer neural network summarizer, and named entity recognizer to obtain a dataset of malaria, dengue, zika, and chikungunya outbreaks over the last 30 years. This scraped dataset was further analyzed in association with global rainfall anomalies derived from NASA’s Integrated Multi-satellitE Retrievals for GPM [Global Precipitation Mission] (IMERG) dataset. This preliminary analysis was to understand the effect of global rainfall patterns on the spread of vector-borne diseases. Analysis of the ProMED-mail and GPM data shows that vector-borne disease outbreaks are clustered towards the tropics and outbreaks are often amplified during the rainy seasons. Our scraped dataset can be a valuable tool in creating comprehensive georeferenced disease records for modeling and predicting future outbreaks.

Web scraping↗
NASA NTRS2022

Linkages Between GRACE Water Storage, Hydrologic Extremes, and Climate Teleconnections in Major African Aquifers

Water resources management is a critical issue in Africa where many regions are subjected to sequential droughts and floods. The objective of our work was to assess spatiotemporal variability in water storage and related controls (climate, human intervention) in major African aquifers and consider approaches toward more sustainable development. Different approaches were used to track water storage, including GRACE/GRACE Follow On satellites for Total Water Storage (TWS); satellite altimetry for reservoir storage, MODIS satellites for vegetation indices, and limited ground-based monitoring. Results show that declining trends in TWS (60–73 km3 over the 18 yr GRACE record) were restricted to aquifers in northern Africa, controlled primarily by irrigation water use in the Nubian and NW Saharan aquifers. Rising TWS trends were found in aquifers in western Africa (23–49 km3), attributed to increased recharge from land use change and cropland expansion. Interannual variability dominated TWS variability in eastern and southern Africa, controlled primarily by climate extremes. Climate teleconnections, particularly El Nino Southern Oscillation and Indian Ocean Dipole, strongly controlled droughts and floods in eastern and southern Africa. Huge aquifer storage in northern Africa suggests that the recent decadal storage declines should not impact the regional aquifers but may affect local conditions. Increasing groundwater levels in western Africa will need to be managed because of locally rising groundwater flooding. More climate resilient water management can be accomplished in eastern and southern Africa by storing water from wet to dry climate cycles. Accessing the natural water storage provided by aquifers in Africa is the obvious way to manage the variability between droughts and floods.

Africa water storage↗
NASA NTRS2021

A Systematic Review and Meta-analysis of the Potential Non-human Animal Reservoirs and Arthropod Vectors of the Mayaro Virus

Improving our understanding of Mayaro virus (MAYV) ecology is critical to guide surveillance and risk assessment. We conducted a PRISMA-adherent systematic review of the published and grey literature to identify potential arthropod vectors and non-human animal reservoirs of MAYV. We searched PubMed/MEDLINE, Embase, Web of Science, SciELO and grey-literature sources including PAHO databases and dissertation repositories. Studies were included if they assessed MAYV virological/immunological measured occurrence in field-caught, domestic, or sentinel animals or in field-caught arthropods. We conducted an animal seroprevalence meta-analysis using a random effects model. We compiled granular georeferenced maps of non-human MAYV occurrence and graded the quality of the studies using a customized framework. Overall, 57 studies were eligible out of 1523 screened, published between the years 1961 and 2020. Seventeen studies reported MAYV positivity in wild mammals, birds, or reptiles and five studies reported MAYV positivity in domestic animals. MAYV positivity was reported in 12 orders of wild-caught vertebrates, most frequently in the orders Charadriiformes and Primate. Sixteen studies detected MAYV in wild-caught mosquito genera including Haemagogus, Aedes, Culex, Psorophora, Coquillettidia, and Sabethes. Vertebrate animals or arthropods with MAYV were detected in Brazil, Panama, Peru, French Guiana, Colombia, Trinidad, Venezuela, Argentina, and Paraguay. Among non-human vertebrates, the Primate order had the highest pooled seroprevalence

Mayaro virus↗
NASA NTRS2021

USA Crop Yield Estimation with MODIS NDVI: Are Remotely Sensed Models Better Than Simple Trend Analyses?

Crop yield forecasting is performed monthly during the growing season by the United States Department of Agriculture’s National Agricultural Statistics Service. The underpinnings are long-established probability surveys reliant on farmers’ feedback in parallel with biophysical measurements. Over the last decade though, satellite imagery from the Moderate Resolution Imaging Spectroradiometer (MODIS) has been used to corroborate the survey information. This is facilitated through the Global Inventory Modeling and Mapping Studies/Global Agricultural Monitoring system, which provides open access to pertinent real-time normalized difference vegetation index (NDVI) data. Hence, two relatively straightforward MODIS-based modeling methods are employed operationally. The first model constitutes mid-season timing based on the maximum peak NDVI value, while the second is reflective of late-season timing by integrating accumulated NDVI over a threshold value. Corn model results nationally show the peak NDVI method provides a R^(2) of 0.88 and a coefficient of variation (CV) of 3.5%. The accumulated method, using an optimally derived 0.58 NDVI threshold, improves the performance to 0.93 and 2.7%, respectively. Both these models outperform simple trend analysis, which is 0.48 and 7.4%, correspondingly. For soybeans the R^(2) results of the peak NDVI model are 0.62, and 0.73 for the accumulated using a 0.56 threshold. CVs are 6.8% and 5.7%, respectively. Spring wheat’s R2performance with the accumulated NDVI model is 0.60 but just 0.40 with peak NDVI. The soybean and spring wheat models perform similarly to trend analysis. Winter wheat and upland cotton show poor model performance, regardless of method. Ultimately, corn yield forecasting derived from MODIS imagery is robust, and there are circumstances when forecasts for soybeans and spring wheat have merit too.

crop yield↗
NASA NTRS2021

Applying a One Health Approach in Global Health and Medicine: Enhancing Involvement of Medical Schools and Global Health Centers

Multidisciplinary and multisectoral approaches such as One Health and related concepts (e.g., Planetary Health, EcoHealth) offer opportunities for synergistic expertise to address complex health threats. The connections between humans, animals, and the environment necessitate collaboration among sectors to comprehensively understand and reduce risks and consequences on health and wellbeing. One Health approaches are increasingly emphasized for national and international plans and strategies related to zoonotic diseases, food safety, antimicrobial resistance, and climate change, but to date, the possible applications in clinical practice and benefits impacting human health are largely missing.

Catherine Machalaba↗
NASA NTRS2021

Impact of Recent Climate Extremes on Mosquito-borne Disease Transmission in Kenya

Climate change and variability influence temperature and rainfall, which impact vector abundance and the dynamics of vector-borne disease transmission. Climate change is projected to increase the frequency and intensity of extreme climate events. Mosquito-borne diseases, such as dengue fever, are primarily transmitted by Aedes aegypti mosquitoes. Freshwater availability and temperature affect dengue vector populations via a variety of biological processes and thus influence the ability of mosquitoes to effectively transmit disease. However, the effect of droughts, floods, heat waves, and cold waves is not well understood. Using vector, climate, and dengue disease data collected between 2013 and 2019 in Kenya, this retrospective cohort study aims to elucidate the impact of extreme rainfall and temperature on mosquito abundance and the risk of arboviral infections. To define extreme periods of rainfall and land surface temperature (LST), we calculated monthly anomalies as deviations from long-term means (1983–2019 for rainfall, 2000–2019 for LST) across four study locations in Kenya. We classified extreme climate events as the upper and lower 10% of these calculated LST or rainfall deviations. Monthly Ae. aegypti abundance was recorded in Kenya using four trapping methods. Blood samples were also collected from children with febrile illness presenting to four field sites and tested for dengue virus using an IgG enzyme-linked immunosorbent assay (ELISA) and polymerase chain reaction (PCR). We found that mosquito eggs and adults were significantly more abundant one month following an abnormally wet month. The relationship between mosquito abundance and dengue risk follows a non-linear association. Our findings suggest that early warnings and targeted interventions during periods of abnormal rainfall and temperature, especially flooding, can potentially contribute to reductions in risk of viral transmission

Aedes aegypti mosquitoes↗
NASA NTRS2021

Climate Predicts Geographic and Temporal Variation in Mosquito-Borne Disease Dynamics on Two Continents

Climate drives population dynamics through multiple mechanisms, which can lead to seemingly context-dependent effects of climate on natural populations. For climate-sensitive diseases such as dengue, chikungunya, and Zika, climate appears to have opposing effects in different contexts. Here we show that a model, parameterized with laboratory measured climate-driven mosquito physiology, captures three key epidemic characteristics across ecologically and culturally distinct settings in Ecuador and Kenya: the number, timing, and duration of outbreaks. The model generates a range of disease dynamics consistent with observed Aedes aegypti abundances and laboratory-confirmed arboviral incidence with variable accuracy (28–85% for vectors, 44–88%for incidence). The model predicted vector dynamics better in sites with a smaller proportion of young children in the population, lower mean temperature, and homes with piped water and made of cement. Models with limited calibration that robustly capture climate-virus relationships can help guide intervention efforts and climate change disease projections.

Climate-change ecology↗
NASA NTRS2020

Farm-Level Risk Factors of Increased Abortion and Mortality in Domestic Ruminants during the 2010 Rift Valley Fever Outbreak in Central South Africa

Background:Rift Valley fever (RVF) outbreaks in domestic ruminants have severe socio-economic impacts. Climate-based continental predictions providing early warnings to regions at risk for RVF outbreaks are not of a high enough resolution for ruminant owners to assess their individual risk. (2) Methods: We analyzed risk factors for RVF occurrence and severity at the farm level using the number of domestic ruminant deaths and abortions reported by farmers in central South Africa during the 2010 RVF outbreaks using a Bayesian multinomial hurdle framework. (3) Results: We found strong support that the proportion of days with precipitation, the number of water sources, and the proportion of goats in the herd were positively associated with increased severity of RVF (the numbers of deaths and abortions). We did not find an association between any risk factors and whether RVF was reported on farms. (4) Conclusions: At the farm level we identified risk factors of RVF severity; however, there was little support for risk factors of RVF occurrence. The identification of farm-level risk factors for Rift Valley fever virus (RVFV) occurrence would support and potentially improve current prediction methods and would provide animal owners with critical information needed in order to assess their herd’s risk of RVFV infection.

Melinda K Rostel↗
NASA NTRS2020

Reaching Broad Audiences from a Large Agency Setting

NASA’s missions, engineering accomplishments, and scientific findings have inspired generations and advanced our understanding of the world we live in. NASA’s Earth science data are acquired by various sources, including satellites, aircraft, and field measurements. Captured data, their by-products, and their visual representations developed by research teams become available within few hours after satellite overpass or processing through a variety of NASA’s imaging, mapping services, and portals. Such online services as the Global Imagery Browse Services (GIBS), Worldview, LANCE, and LAADS DAAC are freely and openly available thanks to NASA’s Earth-Observing Satellite Data and Information Systems (EOSDIS). These services provide access to products created over the last 30 years, support a broad range of users from the scientific community to the general public, and cover a multitude of applications such as basic and applied scientific research, natural hazard and disaster monitoring, and social and educational outreach. In order to illustrate the significance of the overall work, the visualization products, and the broad range of users, we present three case studies: NASA’s Black Marble Product Suite, the Global Imagery Browse Services (GIBS) and Worldview, and the scientific visualization production process to communicate results to the scientific community and the general public.

Helen-Nicole Kostis↗
NASA NTRS2015

Remote Sensing

Remote sensing is one of a suite of geospatial technologies that are having a growing impact in a wide variety of areas from commerce to science to public policy. The field of remote sensing evolved from the interpretation of aerial photographs to the analysis of satellite imagery, and from local area studies to global analyses, with advances in sensor system technologies and digital computing. Today remote sensor systems can provide data from energy emitted, reflected, and/or transmitted from all parts of the electromagnetic spectrum. Examples of applications of these data include population and demography studies, study of archaeological sites, energy studies using hydrological models, urban planning, environmental monitoring, environments, treaty enforcement, land use/land cover planning, weather forecasting, and agricultural production estimation, just to name a few. The material that follows provides a brief overview of the historical development of remote sensing, emphasizing the increasing complexity of platforms, systems, and tasks.

electromagnetic spectrum↗
NASA NTRSDate not supplied

Evaluation of Extreme Soil Moisture Patterns over the Sahel during the 2020 Growing Season

The African Sahel is an ecologically and climatically sensitive region, and thus is a valuable test case for examination of climate extremes. Above-average rainfall during the 2020 growing season (June-October) led to flooding in the West, Central and East Sahel, with implications for infrastructure, agriculture and disease outbreaks. In this study, we evaluate soil moisture patterns in the region during 2020 to assess and quantify the extremeness of the event. The primary tool is the NASA Soil Moisture Active Passive (SMAP) Level 4 surface soil moisture data. Daily, monthly, and seasonal anomalies are computed relative to SMAP’s long-term mean (2015-2021). Additional comparisons are made with longer-time-series data sets, including surface soil moisture from NASA’s Modern-Era Retrospective analysis for Research and Applications, Version 2(MERRA-2; 1981-present) and precipitation from the African Rainfall Climatology, Version 2 (ARC2; 1983-present).Possible drivers of the extreme wet event are examined, including potential links to the concurrent 2020-21 La Niña event. Finally, we explore the connections between the extreme soil moisture and vector-borne disease outbreaks in the region in2020, namely, Rift Valley Fever in Mauritania and Chikungunya in Chad.

Soil Moisture↗