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Biggs, Jason D.

Publications and source records attributed to Biggs, Jason D..

4 records
All sourcesNASA NTRSDOE OSTI
DOE OSTI2015

Characterizing the Intermediates Compound I and II in the Cytochrome P450 Catalytic Cycle with Nonlinear X‐ray Spectroscopy: A Simulation Study

Abstract Cytochrome P450 enzymes are an important family of biocatalysts that oxidize chemically inert CH bonds. There are many unresolved questions regarding the catalytic reaction intermediates, in particular P450 Compound I (Cpd‐I) and II (Cpd‐II). By using simple molecular models, we simulate various X‐ray spectroscopy signals, including X‐ray absorption near‐edge structure (XANES), resonant inelastic X‐ray scattering (RIXS), and stimulated X‐ray Raman spectroscopy (SXRS) of the low‐ and high‐spin states of Cpd‐I and II. Characteristic peak patterns are presented and connected to the corresponding electronic structures. These X‐ray spectroscopy techniques are complementary to more conventional infrared and optical spectroscopy and they help to elucidate the evolving electronic structures of transient species along the reaction path.

Zhang, Yu↗
DOE OSTI2014

Time-, frequency-, and wavevector-resolved x-ray diffraction from single molecules

Using a quantum electrodynamic framework, we calculate the off-resonant scattering of a broadband X-ray pulse from a sample initially prepared in an arbitrary superposition of electronic states. The signal consists of single-particle (incoherent) and two-particle (coherent) contributions that carry different particle form factors that involve different material transitions. Single-molecule experiments involving incoherent scattering are more influenced by inelastic processes compared to bulk measurements. The conditions under which the technique directly measures charge densities (and can be considered as diffraction) as opposed to correlation functions of the charge-density are specified. The results are illustrated with time- and wavevector-resolved signals from a single amino acid molecule (cysteine) following an impulsive excitation by a stimulated X-ray Raman process resonant with the sulfur K-edge. Our theory and simulations can guide future experimental studies on the structures of nano-particles and proteins.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗