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Black, T. Andrew

Publications and source records attributed to Black, T. Andrew.

Network of networks: Time series clustering of AmeriFlux sites

Environmental observation networks, such as AmeriFlux, are foundational for monitoring ecosystem response to climate change, management practices, and natural disturbances; however, their effectiveness depends on their representativeness for the regions or continents. We proposed an empirical, time series approach to quantify the similarity of ecosystem fluxes across AmeriFlux sites. We extracted the diel and seasonal characteristics (i.e., amplitudes, phases) from carbon dioxide, water vapor, energy, and momentum fluxes, which reflect the effects of climate, plant phenology, and ecophysiology on the observations, and explored the potential aggregations of AmeriFlux sites through hierarchical clustering. While net radiation and temperature showed latitudinal clustering as expected, flux variables revealed a more uneven clustering with many small (number of sites < 5), unique groups and a few large (> 100) to intermediate (15–70) groups, highlighting the significant ecological regulations of ecosystem fluxes. Many identified unique groups were from under-sampled ecoregions and biome types of the International Geosphere-Biosphere Programme (IGBP), with distinct flux dynamics compared to the rest of the network. At the finer spatial scale, local topography, disturbance, management, edaphic, and hydrological regimes further enlarge the difference in flux dynamics within the groups. Nonetheless, our clustering approach is a data-driven method to interpret the AmeriFlux network, informing future cross-site syntheses, upscaling, and model-data benchmarking research. Finally, we highlighted the unique and underrepresented sites in the AmeriFlux network, which were found mainly in Hawaii and Latin America, mountains, and at under-sampled IGBP types (e.g., urban, open water), motivating the incorporation of new/unregistered sites from these groups.

54 ENVIRONMENTAL SCIENCES↗

AmeriFlux FLUXNET-1F CA-Ca1 British Columbia - 1949 Douglas-fir stand

This is the AmeriFlux Management Project (AMP) created FLUXNET-1F version of the carbon flux data for the site CA-Ca1 British Columbia - 1949 Douglas-fir stand. This is the FLUXNET version of the carbon flux data for the site CA-Ca1 British Columbia - 1949 Douglas-fir stand produced by applying the standard ONEFlux (1F) software. Site Description - 1949 Douglas-fir stand; Tower Type 20" triangular tower; Latitude/Longitude 49.86725N 125.33360W (GPS survey, 2003. Coordinates updated/corrected May, 2006); Elevation 320 m; North-east facing terrain, 5-10 deg slope; Mean Air Temp. 8.3 °C* ; Mean Annual Precipitation 1461 mm * ; Date Operations Began June 1997 ; Frequency of EC Measurements 20.83 Hz; Frequency of Other Met. Sensors 1 - 4 sec, year round ; Soil Respiration Measurements 30 min., automated soil respiration system in 2000, periodically during growing season using portable system in 2002 ; * 1998-2001 averages from the 1948 Douglas-fir stand meteorological tower

Black, T. Andrew↗

AmeriFlux FLUXNET-1F CA-Ca2 British Columbia - Clearcut Douglas-fir stand (harvested winter 1999/2000)

This is the AmeriFlux Management Project (AMP) created FLUXNET-1F version of the carbon flux data for the site CA-Ca2 British Columbia - Clearcut Douglas-fir stand (harvested winter 1999/2000). This is the FLUXNET version of the carbon flux data for the site CA-Ca2 British Columbia - Clearcut Douglas-fir stand (harvested winter 1999/2000) produced by applying the standard ONEFlux (1F) software. Site Description - Tower Type: 10" triangular tower; Latitude/Longitude 49.87048N -125.29087W (GPS survey, 2003. Coordinates updated/corrected May, 2006); Elevation approx. 180m; Mean Air Temp. (for the growing season) 8.3 C*; Mean Annual Precipitation 1461 mm *; Date Operations Began August 2000; Frequency of EC Measurements 7.7 Hz (2000 ­ 2001), 20 Hz (2002); Frequency of Other Met. Sensors 4 sec, year round; Soil Respiration Measurements Periodically during growing season using portable system in 2002; * 1998-2001 averages from the 1948 Douglas-fir stand meteorological tower

Black, T. Andrew↗

Snow-corrected vegetation indices for improved gross primary productivity assessment in North American evergreen forests

North American evergreen forests cover large areas and influence the global carbon cycle. Satellite remote sensing has been used to track the phenology of ecosystem photosynthesis of these forests by detecting variation in vegetation optical properties associated with physiological and structural features, and most of these methods have been closely tied to vegetation greenness. However, in evergreens, the application of satellite data to monitor photosynthetic phenology is often limited by the lack of sensitivity of greenness-based indices. In this study, we identified 47 evergreen forest flux sites in North America that had MODIS observation overlapping with the flux tower records. We then calculated four vegetation indices using MODIS MAIAC data (MCD19A1), including NDVI, CCI, NIRv, and kNDVI, for the 47 flux sites and evaluated relationships between gross primary productivity (GPP) and vegetation indices across the North American evergreen forests. Our results showed that snow had substantial effects on the performance of all vegetation indices in tracking GPP phenology, particularly in the early spring when rapid changes occurred to both GPP and snow cover. Furthermore, different vegetation indices were affected differently, indicating contradictory and confounding effects of snow on these indices. After correcting for the snow effects, both CCI and NIRv performed well in tracking GPP phenology, albeit for different reasons. CCI is sensitive to seasonal changes in the relative levels of chlorophyll and carotenoid pigments, which are closely tied to GPP phenology in evergreens. NIRv is sensitive to the absorbed photosynthetically active radiation and to the contribution of deciduous components to the overall optical properties. We also found that correlations between GPP and vegetation indices varied among ecoregions and climate classes. In general, regions with pronounced seasonal GPP patterns had stronger correlations between GPP and greenness-based indices than regions with weaker seasonal GPP patterns. These biome differences were less pronounced for CCI. The snow artifacts and complementary vegetation index effects reported here should be considered in any large-scale studies of GPP using reflectance-based indices from optical satellites.

54 ENVIRONMENTAL SCIENCES↗

AmeriFlux FLUXNET-1F CA-Obs Saskatchewan - Western Boreal, Mature Black Spruce

This is the AmeriFlux Management Project (AMP) created FLUXNET-1F version of the carbon flux data for the site CA-Obs Saskatchewan - Western Boreal, Mature Black Spruce. This is the FLUXNET version of the carbon flux data for the site CA-Obs Saskatchewan - Western Boreal, Mature Black Spruce produced by applying the standard ONEFlux (1F) software. Site Description - 53.98717° N, 105.11779° W, elavation of 628.94 m, BOREAS 1994, 1996, BERMS climate measurements began Dec. 1996 and flux measurements in Apr. 1999

Black, T. Andrew↗

The three major axes of terrestrial ecosystem function

The leaf economics spectrum and the global spectrum of plant forms and functions revealed fundamental axes of variation in plant traits, which represent different ecological strategies that are shaped by the evolutionary development of plant species. Ecosystem functions depend on environmental conditions and the traits of species that comprise the ecological communities. However, the axes of variation of ecosystem functions are largely unknown, which limits our understanding of how ecosystems respond as a whole to anthropogenic drivers, climate and environmental variability. Here we derive a set of ecosystem functions from a dataset of surface gas exchange measurements across major terrestrial biomes. We find that most of the variability within ecosystem functions (71.8%) is captured by three key axes. The first axis reflects maximum ecosystem productivity and is mostly explained by vegetation structure. The second axis reflects ecosystem water-use strategies and is jointly explained by variation in vegetation height and climate. The third axis, which represents ecosystem carbon-use efficiency, features a gradient related to aridity, and is explained primarily by variation in vegetation structure. We show that two state-of-the-art land surface models reproduce the first and most important axis of ecosystem functions. However, the models tend to simulate more strongly correlated functions than those observed, which limits their ability to accurately predict the full range of responses to environmental changes in carbon, water and energy cycling in terrestrial ecosystems.

54 ENVIRONMENTAL SCIENCES↗

Data Assimilation of Photosynthetic Light-use Efficiency using Multi-angular Satellite Data: II Model Implementation and Validation

Spatially explicit and temporally continuous estimates of photosynthesis will be of great importance for increasing our understanding of and ultimately closing the terrestrial carbon cycle. Current capabilities to model photosynthesis, however, are limited by accurate enough representations of the complexity of the underlying biochemical processes and the numerous environmental constraints imposed upon plant primary production. A potentially powerful alternative to model photosynthesis through these indirect observations is the use of multi-angular satellite data to infer light-use efficiency (ε) directly from spectral reflectance properties in connection with canopy shadow fractions. Hall et al. (this issue) introduced a new approach for predicting gross ecosystem production that would allow the use of such observations in a data assimilation mode to obtain spatially explicit variations in ε from infrequent polar-orbiting satellite observations, while meteorological data are used to account for the more dynamic responses of ε to variations in environmental conditions caused by changes in weather and illumination. In this second part of the study we implement and validate the approach of Hall et al. (this issue) across an ecologically diverse array of eight flux-tower sites in North America using data acquired from the Compact High Resolution Imaging Spectroradiometer (CHRIS) and eddy-flux observations. Our results show significantly enhanced estimates of ε and therefore cumulative gross ecosystem production (GEP) over the course of one year at all examined sites. We also demonstrate that ε is greatly heterogeneous even across small study areas. Data assimilation and direct inference of GEP from space using a new, proposed sensor could therefore be a significant step towards closing the terrestrial carbon cycle.

Hilker, Thomas↗

Can a Satellite-Derived Estimate of the Fraction of PAR Absorbed by Chlorophyll (FAPAR(sub chl)) Improve Predictions of Light-Use Efficiency and Ecosystem Photosynthesis for a Boreal Aspen Forest?

Gross primary production (GPP) is a key terrestrial ecophysiological process that links atmospheric composition and vegetation processes. Study of GPP is important to global carbon cycles and global warming. One of the most important of these processes, plant photosynthesis, requires solar radiation in the 0.4-0.7 micron range (also known as photosynthetically active radiation or PAR), water, carbon dioxide (CO2), and nutrients. A vegetation canopy is composed primarily of photosynthetically active vegetation (PAV) and non-photosynthetic vegetation (NPV; e.g., senescent foliage, branches and stems). A green leaf is composed of chlorophyll and various proportions of nonphotosynthetic components (e.g., other pigments in the leaf, primary/secondary/tertiary veins, and cell walls). The fraction of PAR absorbed by whole vegetation canopy (FAPAR(sub canopy)) has been widely used in satellite-based Production Efficiency Models to estimate GPP (as a product of FAPAR(sub canopy)x PAR x LUE(sub canopy), where LUE(sub canopy) is light use efficiency at canopy level). However, only the PAR absorbed by chlorophyll (a product of FAPAR(sub chl) x PAR) is used for photosynthesis. Therefore, remote sensing driven biogeochemical models that use FAPAR(sub chl) in estimating GPP (as a product of FAPAR(sub chl x PAR x LUE(sub chl) are more likely to be consistent with plant photosynthesis processes.

Zhang, Qingyuan↗

Relating a Spectral Index from MODIS and Tower-based Measurements to Ecosystem Light Use Efficiency for a Fluxnet-Canada Coniferous Forest

As part of the North American Carbon Program effort to quantify the terrestrial carbon budget of North America, we have been examining the possibility of retrieving ecosystem light use efficiency (LUE, the carbon sequestered per unit photosynthetically active radiation) directly from satellite observations. Our novel approach has been to compare LUE derived from tower fluxes with LUE estimated using spectral indices computed from MODIS satellite observations over forests in the Fluxnet-Canada Research Network, using the MODIS narrow ocean bands acquired over land. We matched carbon flux data collected around the time of the MODIS mid-day overpass for over one hundred relatively clear days in five years (2001-2006) from a mature Douglas fir forest in British Columbia. We also examined hyperspectral reflectance data collected diurnally from the tower in conjunction with the eddy correlation fluxes and meteorological measurements made throughout the 2006 growing season at this site. The tower-based flux data provided an opportunity to examine diurnal and seasonal LUE processes and their relationship to spectral indices at the scale of the forest stand. We evaluated LUE in conjunction with the Photochemical Reflectance Index (PRI), a normalized difference spectral index that uses 531 nm and a reference band to capture responses to high light induced stress afforded by the xanthophyll cycle. Canopy structure information, retrieved from airborne laser scanning radar (LiDAR) observations, was used to partition the forest canopy into sunlit and shaded fractions throughout the day, on numerous days during 2006. At each observation period throughout a day, the PRI was examined for the sunlit, shaded, and intermediate canopy segments defined by their instantaneous position relative to the solar principal plane (SPP). The sunlit sector was associated with the illumination "hotspot" (the reflectance backscatter maximum), the shaded sector with the "cold or dark spot" (the reflectance forward scatter minimum), while the intermediate, mixed sunlit/shade sector was located in the cross-plane to the SPP. The PRI indices clearly captured the differences in leaf groups, with sunlit foliage exhibiting the lowest values on sunny days throughout the 2006 season. When tower-based canopy-level LUE was recalculated to estimate foliage-based values (LUE(sub foilage) for the three foliage groups under their incident light environments, a strong linear relationship for PRI:LUE(sub foilage) was demonstrated (0.6 less than or equal to r(sup 2) less than or equal to 0.8, n=822, P<0.0001). The MODIS data represent relatively large areas when acquired at nadir (approx.1 sq km) or at variable off-nadir view angles (greater than or equal to 1 sq km) looking forward or aft. Nevertheless, a similar relationship between MODIS PRI and tower-based LUE was obtained from satellite observations (r(sup 2) = 0.76, n=105, P= 0.026) when the azimuth offsets from the SPP for off-nadir observations were considered. At this relatively high latitude of 50 degrees, the MODIS directional observations were offset from the SPP by approximately 50 degrees, but still represented backscatter or forward scatter sectors of the bidirectional reflectance distribution function (BRDF). The backscatter observations sampled the sunlit forest and provided lower PRI values, in general, than the forward scatter observations from the shaded forest. Since the hotspot and darkspot were not typically directly observed, the dynamic range for MODIS PRI was less than that observed in the SPP at the canopy level; therefore, MODIS PRI values were more similar to those observed in sifu in the BRDF cross-plane. While not ideal in terms of spatial resolution or optimal viewing configuration, the MODIS observations nevertheless provide a means to monitor forest under stress using narrow spectral band indices and off-nadir observations. This research has stimulated several spin-off studies for remote sensinf LUE, and demonstrates the importance of the connection between ecosystem structure and physiological function.

Middleton, Elizabeth M.↗

BOREAS TF-1 SSA-OA Soil Characteristics Data

The BOREAS TF-1 team collected several data sets in support of its efforts to characterize and interpret soil information at the SSA-OA tower site in 1994 as part of BOREAS. Data sets collected include soil respiration, temperature, moisture, and gravimetric data. The data are stored in tabular ASCII format.

Black, T. Andrew↗