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Chen, Juan

Publications and source records attributed to Chen, Juan.

18 records
All sourcesNASA NTRSDOE OSTI
DOE OSTI2023

Co-regulation of water and energy in the spatial heterogeneity of drought resistance and resilience

Vegetation resistance and resilience to drought are linked to the stability of terrestrial ecosystems under climate change. However, the factors driving the spatial heterogeneity in drought resistance and resilience remain poorly understood. In the study, we utilized multiple satellite-derived vegetation indices to calculate and analyze changes in drought resistance and resilience across various biomes worldwide. Results indicated that drought resistance showed a significant increase with the increase in water availability, but no significant relationship was observed between drought resistance and energy. In contrast, drought resilience exhibited a significant increase with an increase in energy rather than in water. Furthermore, a negative correlation was observed between drought resistance and resilience across different biomes worldwide, indicating a trade-off between resistance and resilience. However, the strength of the negative correlation varied based on water and energy conditions. These findings provide compelling evidence that water and energy co-regulated the spatial heterogeneity in drought resistance and resilience across the globe. The robust linear relationship between drought resistance and resilience and available water and energy demonstrated in our study is critical to accurately predicting and assessing the impact of climate change on vegetation growth and terrestrial carbon cycling in the future.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2019

Effects of Nb on Superelasticity and Low Modulus Properties of Metastable β-Type Ti-Nb-Ta-Zr Biomedical Alloys

In this work, a series of Ti-xNb-2Ta-3Zr (x = 25, 30, 35, 40 wt.%) alloys are designed, and the transformation of β-phase to α″ martensitic, β-phase stability, microstructure, mechanical properties and corrosion performance of these alloys are investigated. The phase analysis shows as the Nb content increases, the α″ phase in these alloys decreases, while the intensity of the two main peaks β(110) and β(211) of Ti-40Nb-2Ta-3Zr alloy is reduced. These results can be attributed to the variation of β-phase stability caused by Nb element of alloy and cold rolling process. The mechanical properties test shows that the elastic modulus (52 GPa) of the Ti-35Nb-2Ta-3Zr alloy is the lowest and the elongation (18.8%) is the maximum. In addition, the alloy is susceptible to β-phase elastic deformation and stress-induced martensitic transformation resulting in the highest recovery strain of the alloy (66.87%). The polarization curves show that the Ti-35Nb-2Ta-3Zr alloy has the highest corrosion potential (− 0.34 V) and the lowest corrosion current density (0.21 μA cm{sup −2}) exhibiting the best corrosion resistance.

36 MATERIALS SCIENCE↗
DOE OSTI2018

Pezizomycetes genomes reveal the molecular basis of ectomycorrhizal truffle lifestyle

Tuberaceae is one of the most diverse lineages of symbiotic truffle-forming fungi. To understand the molecular underpinning of the ectomycorrhizal truffle lifestyle, we compared the genomes of Piedmont white truffle (Tuber magnatum), Périgord black truffle (Tuber melanosporum), Burgundy truffle (Tuber aestivum), pig truffle (Choiromyces venosus) and desert truffle (Terfezia boudieri) to saprotrophic Pezizomycetes. Reconstructed gene duplication/loss histories along a time-calibrated phylogeny of Ascomycetes revealed that Tuberaceae-specific traits may be related to a higher gene diversification rate. Genomic features in Tuber species appear to be very similar, with high transposon content, few genes coding lignocellulose-degrading enzymes, a substantial set of lineage-specific fruiting-body-upregulated genes and high expression of genes involved in volatile organic compound metabolism. Developmental and metabolic pathways expressed in ectomycorrhizae and fruiting bodies of T. magnatum and T. melanosporum are unexpectedly very similar, owing to the fact that they diverged ~100 Ma. Volatile organic compounds from pungent truffle odours are not the products of Tuber-specific gene innovations, but rely on the differential expression of an existing gene repertoire. These genomic resources will help to address fundamental questions in the evolution of the truffle lifestyle and the ecology of fungi that have been praised as food delicacies for centuries.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2018

Glycine confers neuroprotection through PTEN/AKT signal pathway in experimental intracerebral hemorrhage

Highlights: • Glycine attenuated brain injuries after rats ICH. • Glycine down-regulated PTEN in rats ICH. • The neuroprotective effect of glycine was mediated through PTEN/Akt signal pathway in experimental rat ICH. Glycine has been shown to protect against ischemic stroke through various mechanisms. Phosphatase and tensin homolog deleted on chromosome 10 (PTEN) which antagonize Akt-dependent cell survival has been linked to neuronal damage. However, whether glycine has a neuroprotective property in intracerebral hemorrhage (ICH) was unknown. This study aimed to determine the protective effect of glycine in rats ICH. Adult male Sprague-Dawley (SD) rats were subjected to left striatum infusion of autologous blood. ICH animals received glycine (0.2–3 mg/kg, icv) at 1 h after ICH with or without pre-injection of Akt Inhibitor IV (100 μM, 2 μl, icv) 0.5 h prior to glycine treatment. Our results showed that in the perihematomal area PTEN was up-regulated in the early stage after ICH. However, glycine treatment decreased PTEN protein level and increased the phosphorylation level of AKT (p-AKT) in the perihematomal area. With the administration of glycine, neuronal death was significantly reduced and Evans blue leakage was alleviated as well as the brain edema after ICH. Moreover, hematoma volume was decreased and neurobehavioral outcome was improved. Nevertheless, Akt Inhibitor IV abolished the neuroprotective effects of glycine after ICH. Together, our findings demonstrate, for the first time, the protective role of glycine on ICH rats, and suggest that the neuroprotective effect of glycine was mediated through PTEN/Akt signal pathway.

60 APPLIED LIFE SCIENCES↗
DOE OSTI2018

Rap1b enhances the invasion and migration of hepatocellular carcinoma cells by up-regulating Twist 1

Highlights: • Rap1b was up regulated HCC tissue and HCC cells. • Rap1b promoted HCC cell proliferation in vitro and in vivo. • Upregulation of Rap1b repressed invasion and migration of hepatoma cells. • Rap1b promoted Twist 1 expression by enhancing its promoter activity. Rap1b was found be dysregulated in several types of cancers. Previously, we have demonstrated that Rap1b affects proliferation, migration and invasion of hepatocellular carcinoma (HCC) cells. However, the definite function of Rap1b in HCC remains unknown. Here, we reported that Rap1b was significantly up-regulated in HCC tissues compared with the non-tumoral liver tissues. Overexpression of Rap1b promoted tumor growth and migration in vitro and tumor formation in vivo. Oppositely, inhibition of Rap1b suppressed the proliferation and migration of HCC cells. Mechanism study revealed that Rap1b could up-regulate Twist 1 expression by enhancing its promoter activity. We concluded that Rap1b increased Twist 1 expression by targeting its promoter activity to induce proliferation and migration of HCC cells.

60 APPLIED LIFE SCIENCES↗
DOE OSTI2018

Analysis of Repeatability and Reproducibility Studies With Ordinal Measurements

A Bayesian inferential approach with a noninformative prior is introduced to analyze ordinal repeatability and reproducibility (R&R) data using the De Mast–Van Wieringen model. This approach is extended with a weakly informative prior and random effects to allow for the consideration of a population of raters and prediction of a new rater. This random-effects approach is also shown to result in partial pooling of estimates across raters. In addition, match-probability-based measures to decompose ordinal R&R study data into contributions due to repeatability and due to reproducibility are defined. All extensions involving Bayesian inference (for fixed or random effects) and measures are illustrated on real and simulated ordinal R&R study data and are applicable in business and industry settings. This methodology can be implemented using the supplemental R package ordinalRR available from CRAN. Additional supplementary material for this article is available online.

97 MATHEMATICS AND COMPUTING↗
DOE OSTI2018

HBx-elevated SIRT2 promotes HBV replication and hepatocarcinogenesis

Highlights: • HBx upregulates the expression of SIRT2 in HCC cell lines. • SIRT2 promotes the transcription and replication of HBV. • SIRT2 facilitates HBx-mediated hepatocarcinogenesis. Sirtuin 2 (SIRT2) is a class III histone deacetylase that has been implicated to promote HCC development. However, the functional role of SIRT2 in HBV is still unclear. In this study, we found that HBV could upregulate SIRT2 expression. Additionally, HBx could activate SIRT2 promoter to upregulate the mRNA and protein level of SIRT2. Furthermore, we found that SIRT2 could facilitate HBV transcription and replication. Finally, we demonstrated that upregulation of SIRT2 by HBx promoted hepatocarcinogenesis. In summary, our findings revealed a novel function of SIRT2 in HBV and HBV-mediated HCC. First, SIRT2 could promote HBV replication. And then HBx-elevated SIRT2 could enhance the transformation of HBV-mediated HCC. Those findings highlight the potential role of SIRT2 in HBV and HBV-mediated HCC by interaction with HBx.

60 APPLIED LIFE SCIENCES↗
DOE OSTI2018

AF119895 regulates NXF3 expression to promote migration and invasion of hepatocellular carcinoma through an interaction with miR-6508-3p

Highlights: • A new LncRNA, AF119895, was aberrantly upregulated in HCC tissues and HCC cells. • AF119895 promoted HCC cell migration and invasion in vitro and in vivo. • NXF3 was a downstream target of AF119895. • NXF3 depletion could decrease HCC cells migration and invasion. • AF119895 could act as an endogenous sponge by binding to miR-6508-3p and reduce miR-6508-3p expression. • AF119895 modulates the repression of NXF3 by binding to miR-6508-3p to promote migration and invasion of hepatocellular carcinoma. Various studies revealed that numerous long noncoding RNAs (lncRNAs) have been found dysregulated in HCC and played important role in hepatocarcinogenesis, although the underlying mechanism still remains unclear. Herein, we reported AF119895, a new lncRNA which was identified from microarray and amplified in HCC. Functionally, AF119895 promoted migration and invasion of HCC cells both in vitro and in vivo. Furthermore, we identified that NXF3 was a downstream target of AF119895. NXF3 depletion could decrease HCC cells migration and invasion. In addition, AF119895 could act as an endogenous sponge by binding to miR-6508-3p and reduce miR-6508-3p expression. And miR-6508-3p could regulate NXF3 by interacting with its 3′UTR. These observations collectively demonstrate that AF119895 modulates the repression of NXF3 by binding to miR-6508-3p. Our results outline a novel signaling pathway mediated by AF119895 and suggest its candidacy as a new prognostic biomarker and therapeutic target of HCC.

60 APPLIED LIFE SCIENCES↗
DOE OSTI2018

Q482H mutation of procaspase-8 in acute myeloid leukemia abolishes caspase-8-mediated apoptosis by impairing procaspase-8 dimerization

Highlights: • The Q482H mutation of procaspase-8 was identified from AML patients. • The Q482H mutation was associated with poor chemotherapy response in AML patients. • The Q482H mutation abolished procaspase-8 mediated apoptotic signaling cascade. • The Q482H inhibited TRAIL-induced apoptosis. • The Q482H mutation disrupted the dimeriztion of procaspase-8. Certain procaspase-8 mutations are reported to be associated with the progression and prognosis of multiple tumors. However, it remains unclear whether the poor chemotherapy response and frequent relapse after complete remission of patients with acute myeloid leukemia (AML) is also related to procaspase-8 abnormalities.

60 APPLIED LIFE SCIENCES↗
DOE OSTI2017

Deacetylation of Ku70 by SIRT6 attenuates Bax-mediated apoptosis in hepatocellular carcinoma

SIRT6 is a class III histone deacetylase that has been implicated in HCC development. We previously reported that SIRT6 potentiated apoptosis evasion in hepatocellular carcinoma by inhibiting both Bax expression and mitochondrial translocalization. However, the mechanism underlying SIRT6-mediated inhibition of Bax mitochondrial localization remains elusive. In this study, we found that although SIRT6 had no effect on the expression level of Ku70, SIRT6 could interact with Ku70 and deacetylate it. The increased acetylation of Ku70 in SIRT6-depleted cells disrupt its interaction with Bax, which finally resulted in Bax mitochondrial translocalization. Furthermore, lysine K542 on Ku70 was the target for deacetylation by SIRT6. Ku70{sup K542Q} mutation abolished suppression of association between Ku70 and Bax and caused redistribution of Bax to the cytosol in SIRT6-depleted cells. Finally, Ku70{sup K542Q} mutation could reversed the inhibition of growth and apoptosis promotion mediated by SIRT6 silencing. Together, our findings revealed SIRT6 could block the mitochondrial translocation of Bax and decrease the apoptotic ratio of HCC cells by deacetylation of Ku70. SIRT6 may serve as a promising target for developing targeted therapies for HCC in the future. - Highlights: • SIRT6 could associate with and deacetylate Ku70 in HCC cells. • Deacetylated Ku70 could interact with Bax and block its translocation to mitochondria. • SIRT6 deacetylates Ku70 on the lysine 542. • Ku70{sup K542Q} mutation reverses the inhibition of proliferation and promotion of apoptosis which caused by SIRT6 suppression.

60 APPLIED LIFE SCIENCES↗
NASA NTRS2009

Efficient Type Representation in TAL

Certifying compilers generate proofs for low-level code that guarantee safety properties of the code. Type information is an essential part of safety proofs. But the size of type information remains a concern for certifying compilers in practice. This paper demonstrates type representation techniques in a large-scale compiler that achieves both concise type information and efficient type checking. In our 200,000-line certifying compiler, the size of type information is about 36% of the size of pure code and data for our benchmarks, the best result to the best of our knowledge. The type checking time is about 2% of the compilation time.

Chen, Juan↗