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Chen, Yu

Publications and source records attributed to Chen, Yu.

At least 163 records · Page 9
All sourcesNASA NTRSDOE OSTI
DOE OSTI2016

Crystallographic Structure of Truncated CCL21 and the Putative Sulfotyrosine-Binding Site

CCL21 chemokine binds the G protein-coupled receptor CCR7, aiding not only in immune response but also in cancer metastasis. Compared with other chemokines, CCL21 has a unique extended unstructured C-terminus that is truncated in some naturally occurring variants. We have determined the X-ray crystallographic structure of a truncated CCL21 (residues 1–79) lacking the extended C-terminus and identified, via two-dimensional nuclear magnetic resonance (NMR), a putative sulfotyrosine-binding site that may recognize such post-translationally modified tyrosine residues on the receptor. Compared to the previously determined NMR structure of full-length CCL21, the crystal structure presents new druggable binding hot spots resulting from an alternative N-loop conformation. In addition, whereas the previous NMR structure did not provide any structural information after residue 70, the C-terminus of the truncated CCL21, ordered up to Ala77 in our crystal structure, is placed near the N-loop and sulfotyrosine-binding site, indicating that the extended C-terminus of full-length CCL21 can interact with this important region for receptor binding. These observations suggest a potential origin for the autoinhibition of CCL21 activity that was recently described. In conclusion, the new crystal structure and binding hot spot analysis have important implications for the function of the CCL21 C-terminus and drug discovery.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗
DOE OSTI2016

Engineered band structure for an enhanced performance on quantum dot-sensitized solar cells

A photon-to-current efficiency of 2.93% is received for the Mn-doped CdS (MCdS)-quantum dot sensitized solar cells (QDSSCs) using Mn:ZnO (MZnO) nanowire as photoanode. Hydrothermal synthesized MZnO are spin-coated on fluorine doped tin oxide (FTO) glass with P25 paste to serve as photoanode after calcinations. MCdS was deposited on the MZnO film by the successive ionic layer adsorption and reaction method. The long lived excitation energy state of Mn{sup 2+} is located inside the conduction band in the wide bandgap ZnO and under the conduction band of CdS, which increases the energetic overlap of donor and acceptor states, reducing the “loss-in-potential,” inhibiting charge recombination, and accelerating electron injection. The engineered band structure is well reflected by the electrochemical band detected using cyclic voltammetry. Cell performances are evidenced by current density-voltage (J-V) traces, diffuse reflectance spectra, transient PL spectroscopy, and incident photon to current conversion efficiency characterizations. Further coating of CdSe on MZnO/MCdS electrode expands the light absorption band of the sensitizer, an efficiency of 4.94% is received for QDSSCs.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗
DOE OSTI2016

Multilevel segmentation of intracranial aneurysms in CT angiography images

Purpose: Segmentation of aneurysms plays an important role in interventional planning. Yet, the segmentation of both the lumen and the thrombus of an intracranial aneurysm in computed tomography angiography (CTA) remains a challenge. This paper proposes a multilevel segmentation methodology for efficiently segmenting intracranial aneurysms in CTA images. Methods: The proposed methodology first uses the lattice Boltzmann method (LBM) to extract the lumen part directly from the original image. Then, the LBM is applied again on an intermediate image whose lumen part is filled by the mean gray-level value outside the lumen, to yield an image region containing part of the aneurysm boundary. After that, an expanding disk is introduced to estimate the complete contour of the aneurysm. Finally, the contour detected is used as the initial contour of the level set with ellipse to refine the aneurysm. Results: The results obtained on 11 patients from different hospitals showed that the proposed segmentation was comparable with manual segmentation, and that quantitatively, the average segmentation matching factor (SMF) reached 86.99%, demonstrating good segmentation accuracy. Chan–Vese method, Sen’s model, and Luca’s model were used to compare the proposed method and their average SMF values were 39.98%, 40.76%, and 77.11%, respectively. Conclusions: The authors have presented a multilevel segmentation method based on the LBM and level set with ellipse for accurate segmentation of intracranial aneurysms. Compared to three existing methods, for all eleven patients, the proposed method can successfully segment the lumen with the highest SMF values for nine patients and second highest SMF values for the two. It also segments the entire aneurysm with the highest SMF values for ten patients and second highest SMF value for the one. This makes it potential for clinical assessment of the volume and aspect ratio of the intracranial aneurysms.

60 APPLIED LIFE SCIENCES↗
DOE OSTI2016

Fundamental Investigations and Rational Design of Durable High-Performance SOFC Cathodes

The main objective of this project is to unravel the degradation mechanism of LSCF cathodes under realistic operating conditions with different types of contaminants, aiming towards the rational design of cathodes with high-performance and enhanced durability by combining a porous backbone (such as LSCF) with a thin catalyst coating. The mechanistic understanding will help us to optimize the composition and morphology of the catalyst layer and microstructure of the LSCF backbone for better performance and durability. More specifically, the technical objectives include: (1) to unravel the degradation mechanism of LSCF cathodes under realistic operating conditions with different types of contaminants using in situ and ex situ measurements performed on specially-designed cathodes; (2) to examine the microstructural and compositional evolution of LSCF cathodes as well as the cathode/electrolyte interfaces under realistic operating conditions; (3) to correlate the fuel cell performance instability and degradation with the microstructural and morphological evolution and surface chemistry change of the cathode under realistic operating conditions; (4) to explore new catalyst materials and electrode structures to enhance the stability of the LSCF cathode under realistic operating conditions; and (5) to validate the long term stability of the modified LSCF cathode in commercially available cells under realistic operating conditions. We have systematically evaluated LSCF cathodes in symmetrical cells and anode supported cells under realistic conditions with different types of contaminants such as humidity, CO 2 , and Cr. Electrochemical models for the design of test cells and understanding of mechanisms have been developed for the exploration of fundamental properties of electrode materials. It is demonstrated that the activity and stability of LSCF cathodes can be degraded by the introduction of contaminants. The microstructural and compositional evolution of LSCF cathodes as well as the cathode/electrolyte interfaces under realistic operating conditions has been studied. It is found that SrO readily segregated/enriched on the LSCF surface. More severe contamination conditions cause more SrO on surface. Novel catalyst coatings through particle depositions (PrOx) or continuous thin films (PNM) were successfully developed to improve the activity and stability of LSCF cathodes. Finally, we have demonstrated enhanced activity and stability of LSCF cathodes over longer periods of time in homemade and commercially available cells by an optimized PNM (dense film and particles) infiltration process, under clean air and realistic operating conditions (3% H 2 O, 5% CO 2 and direct Crofer contact). Both performance and durability of single cells with PNM coating has been enhanced compared with those without coating. Raman analysis of cathodes surface indicated that the intensity of SrCrO 4 was significantly decreased.

30 DIRECT ENERGY CONVERSION↗
DOE OSTI2016

Anisotropic seismic-waveform inversion: Application to a seismic velocity model from Eleven-Mile Canyon in Nevada

Accurate imaging and characterization of fracture zones is crucial for geothermal energy exploration. Aligned fractures within fracture zones behave as anisotropic media for seismic-wave propagation. The anisotropic properties in fracture zones introduce extra difficulties for seismic imaging and waveform inversion. We have recently developed a new anisotropic elastic-waveform inversion method using a modified total-variation regularization scheme and a wave-energy-base preconditioning technique. Our new inversion method uses the parameterization of elasticity constants to describe anisotropic media, and hence it can properly handle arbitrary anisotropy. We apply our new inversion method to a seismic velocity model along a 2D-line seismic data acquired at Eleven-Mile Canyon located at the Southern Dixie Valley in Nevada for geothermal energy exploration. Our inversion results show that anisotropic elastic-waveform inversion has potential to reconstruct subsurface anisotropic elastic parameters for imaging and characterization of fracture zones.

15 GEOTHERMAL ENERGY↗
DOE OSTI2016

Mechanism of a cytosolic O -glycosyltransferase essential for the synthesis of a bacterial adhesion protein

O-glycosylation of Ser and Thr residues is an important process in all organisms, which is only poorly understood. Such modification is required for the export and function of adhesin proteins that mediate the attachment of pathogenic Gram-positive bacteria to host cells. Here, we have analyzed the mechanism by which the cytosolic O-glycosyltransferase GtfA/B of Streptococcus gordonii modifies the Ser/Thr-rich repeats of adhesin. The enzyme is a tetramer containing two molecules each of GtfA and GtfB. The two subunits have the same fold, but only GtfA contains an active site, whereas GtfB provides the primary binding site for adhesin. During a first phase of glycosylation, the conformation of GtfB is restrained by GtfA to bind substrate with unmodified Ser/Thr residues. In a slow second phase, GtfB recognizes residues that are already modified with N-acetylglucosamine, likely by converting into a relaxed conformation in which one interface with GtfA is broken. Here, these results explain how the glycosyltransferase modifies a progressively changing substrate molecule.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2016

Irinotecan (CPT-11)-induced elevation of bile acids potentiates suppression of IL-10 expression

Irinotecan (CPT-11) is a first-line anti-colon cancer drug, however; CPT-11-induced toxicity remains a key factor limiting its clinical application. To search for clues to the mechanism of CPT-11-induced toxicity, metabolomics was applied using ultra-performance liquid chromatography coupled with electrospray ionization quadrupole time-of-flight mass spectrometry. Intraperitoneal injection of 50 mg/kg of CPT-11 induced loss of body weight, and intestine toxicity. Changes in gallbladder morphology suggested alterations in bile acid metabolism, as revealed at the molecular level by analysis of the liver, bile, and ileum metabolomes between the vehicle-treated control group and the CPT-11-treated group. Analysis of immune cell populations further showed that CPT-11 treatment significantly decreased the IL-10-producing CD4 T cell frequency in intestinal lamina propria lymphocytes, but not in spleen or mesenteric lymph nodes. In vitro cell culture studies showed that the addition of bile acids deoxycholic acid and taurodeoxycholic acid accelerated the CPT-11-induced suppression of IL-10 secretion by activated CD4{sup +} naive T cells isolated from mouse splenocytes. These results showed that CPT-11 treatment caused metabolic changes in the composition of bile acids that altered CPT-11-induced suppression of IL-10 expression. - Highlights: • CPT-11 is an effective anticancer drug, but induced toxicity limits its application in the clinic. • CPT-11 decreased IL-10-producing CD4 T cell frequency in intestinal lamina propria lymphocytes. • CPT-11 altered the composition of bile acid metabolites, notably DCA and TDCA in liver, bile and intestine. • DCA and TDCA potentiated CPT-11-induced suppression of IL-10 secretion by active CD4{sup +} naive T cells.

60 APPLIED LIFE SCIENCES↗
DOE OSTI2016

High-Energy Neutron Backgrounds for Underground Dark Matter Experiments

Direct dark matter detection experiments usually have excellent capability to distinguish nuclear recoils, expected interactions with Weakly Interacting Massive Particle (WIMP) dark matter, and electronic recoils, so that they can efficiently reject background events such as gamma-rays and charged particles. However, both WIMPs and neutrons can induce nuclear recoils. Neutrons are then the most crucial background for direct dark matter detection. It is important to understand and account for all sources of neutron backgrounds when claiming a discovery of dark matter detection or reporting limits on the WIMP-nucleon cross section. One type of neutron background that is not well understood is the cosmogenic neutrons from muons interacting with the underground cavern rock and materials surrounding a dark matter detector. The Neutron Multiplicity Meter (NMM) is a water Cherenkov detector capable of measuring the cosmogenic neutron flux at the Soudan Underground Laboratory, which has an overburden of 2090 meters water equivalent. The NMM consists of two 2.2-tonne gadolinium-doped water tanks situated atop a 20-tonne lead target. It detects a high-energy (>~ 50 MeV) neutron via moderation and capture of the multiple secondary neutrons released when the former interacts in the lead target. The multiplicity of secondary neutrons for the high-energy neutron provides a benchmark for comparison to the current Monte Carlo predictions. Combining with the Monte Carlo simulation, the muon-induced high-energy neutron flux above 50 MeV is measured to be (1.3 ± 0.2) ~ 10-9 cm-2s-1, in reasonable agreement with the model prediction. The measured multiplicity spectrum agrees well with that of Monte Carlo simulation for multiplicity below 10, but shows an excess of approximately a factor of three over Monte Carlo prediction for multiplicities ~ 10 - 20. In an effort to reduce neutron backgrounds for the dark matter experiment SuperCDMS SNO- LAB, an active neutron veto was developed. It is estimated that the current design of the neutron veto with a 40 cm thick layer of boron-doped liquid scintillator can achieve a > 90% efficiency for tagging the single-scatter neutrons. In addition, a one-quarter scale prototype detector for neutron veto has been built and tested.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2015

Dramatically enhanced reversibility of Li 2 O in SnO 2 -based electrodes: the effect of nanostructure on high initial reversible capacity

The formation of irreversible Li 2 O during discharge is believed to be the main cause of large capacity loss and low Coulombic efficiency of oxide negative electrodes for Li batteries. This assumption may have misguided the development of high-capacity SnO 2 -based anodes in recent years. In this work we demonstrated that contrary to this perception, Li 2 O can indeed be highly reversible in a SnO 2 electrode with controlled nanostructure and achieved an initial Coulombic efficiency of ~95.5%, much higher than that previously believed to be possible (52.4%). In situ spectroscopic and diffraction analyses corroborate highly reversible electrochemical cycling, suggesting that the interfaces and grain boundaries of nano-sized SnO 2 may suppress the coarsening of Sn and enable the conversion between Li 2 O and Sn to amorphous SnO 2 when de-lithiated. These results provide important insight into the rational design of high-performance oxide electrodes for Li-ion batteries.

25 ENERGY STORAGE↗