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Clark, Bryan

Publications and source records attributed to Clark, Bryan.

Porting Classical Approaches for Quantum Simulations to Quantum Computers

Simulating quantum many-body systems is one of the most promising problems in which we might anticipate that quantum computers should show quantum advantage. Unfortunately, there is still a gap between this promise and actual practice. New quantum algorithms need to be developed and the current quantum algorithms have various difficulties - e.g efficient state preparation - which must be overcome and improved upon. In many cases, classical approaches need to be ported over to quantum devices. In this project we have developed a suite of new quantum algorithms which makes progress in this regard. We developed a new optimization scheme for variational quantum eigensolvers, UBOS, which mitigates problems with local minimas and barren plateaus while improving convergence to the ground state by an order of magnitude. We developed a new way to utilize qubitization to find ground states of nearly frustration-free Hamiltonians faster than all previous methods. We developed a series of state preparation techniques which helps initialize parameterized quantum circuits into reasonable starting points on which quantum algorithms are then applied. In addition to the development of novel algorithms, it is critical to have classical simulation techniques for approximately simulating quantum circuits which can be used to benchmark and understand quantum algorithms. Toward that end, we developed a novel POVM formalism to simulate quantum circuits as well as exemplify the massive parallelization of tensor network methodologies. Finally, we developed physical understanding of entanglement phase transitions such as many-body localization and random tensor networks.

75 CONDENSED MATTER PHYSICS, SUPERCONDUCTIVITY AND↗

Differential DNA methylation and metabolite profiling of Atlantic killifish (Fundulus heteroclitus) from the New Bedford Harbor Superfund site

Atlantic killifish (Fundulus heteroclitus) is a valuable model in evolutionary toxicology to study how the interactions between genetic and environmental factors serve the adaptive ability of organisms to resist chemical pollution. Killifish populations inhabiting environmental toxicant-contaminated New Bedford Harbor (NBH) show phenotypes tolerant to polychlorinated biphenyls (PCBs) and differences at the transcriptional and genomic levels. However, limited research has explored epigenetic alterations and metabolic effects in NBH killifish. To identify the involvement of epigenetic and metabolic regulation in the adaptive response of killifish, we investigated tissue- and sex-specific differences in global DNA methylation and metabolomic profiles of NBH killifish populations, compared to sensitive populations from a non-polluted site, Scorton Creek (SC). The results revealed that liver-specific global DNA hypomethylation and differential metabolites were evident in fish from NBH compared with those from SC. The sex-specific differences were not greater than the tissue-specific differences. We demonstrated liver-specific enriched metabolic pathways (e.g., amino acid metabolic pathways converged into the urea cycle and glutathione metabolism), suggesting possible crosstalk between differential metabolites and DNA hypomethylation in the livers of NBH killifish. Additional investigation of methylated gene regions is necessary to understand the functional role of DNA hypomethylation in the regulation of enzyme-encoding genes associated with metabolic processes and physiological changes in NBH populations.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Final technical report: SciDAC partnership "Predictive Computing for Condensed Matter"

Fundamental progress in energy technology depends critically on our ability to design, fabricate, characterize, and optimize advanced materials that can convert, transport, and store energies as well as display useful functions at minimum energy consumptions. To achieve this, we must first understand mechanisms underlying the functions and then be able to design materials with predicted properties. Unlike conventional structural materials, optoelectronic or magnetic materials for energy technology operate by quantum mechanical principles, which are hard to extract from experiments alone. Some representative unsolved problems of condensed-phase electronic structures in general include (1) the detailed mechanism of high-temperature superconductors such as cuprates and iron-arsenide materials; (2) the structures of solids in the presence of polymorphism; (3) excited states in solids and systematically accurate calculations of quasiparticle energy bands; (4) the structure of strongly correlated wave functions of solids. In this project, we aim at establishing general and predictive mathematical theories for solids and computational methods that implement them. We will then apply these methods to outstanding solid-state problems recognized by experimentalists including the above, with a view to solving them computationally. Hence, the project has the following three research objectives, all of which have been met: Predictive Electronic Structure Theories for Solids, Scalable Algorithms and Software, and Applications to Outstanding Condensed Matter Problems.

74 ATOMIC AND MOLECULAR PHYSICS↗