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Davis, John M.

Publications and source records attributed to Davis, John M..

At least 19 records
All sourcesNASA NTRSDOE OSTI
DOE OSTI2023

Thermally driven phase transitions in freestanding low-buckled silicene, germanene, and stanene

Low-buckled silicene, germanene, and stanene are group-IV graphene allotropes. They form a honeycomb lattice out of two interpenetrating (A and B) triangular sublattices that are vertically separated by a small distance Δ z . The atomic numbers Z of silicon, germanium, and tin are larger than that of carbon (Z C = 6), making them the first experimentally viable two-dimensional topological insulators. Those materials have a twice-energy-degenerate atomistic structure characterized by the buckling direction of the B sublattice with respect to the A sublattice [whereby the B atom either protrudes above (Δ z > 0) or below (Δ z < 0) the A atoms], and the consequences of that energy degeneracy on their elastic and electronic properties have not been reported thus far. Here, we uncover ferroelastic, bistable behavior on silicene, which turns into an average planar structure at about 600 K. Furthermore, the creation of electron and hole puddles obfuscates the zero-temperature spin-orbit coupling (SOC)-induced band gaps at temperatures as low as 200 K, which may discard silicene as a viable two-dimensional topological insulator for room-temperature applications. Germanene, on the other hand, never undergoes a low-buckled-to-planar two-dimensional transformation, becoming amorphous at around 675 K instead, and preserving its SOC-induced band gap despite band broadening. Stanene undergoes a transition onto a crystalline three-dimensional structure at about 300 K, preserving its SOC-induced electronic band gap up to that temperature. Unlike what is observed in silicene and germanene, stanene readily develops a higher-coordinated structure with a high degree of structural order. Furthermore, the structural phenomena are shown to have far-reaching consequences for the electronic and vibrational properties of those two-dimensional topological insulators.

36 MATERIALS SCIENCE↗
DOE OSTI2022

Elasticity of two-dimensional ferroelectrics across their paraelectric phase transformation

The mechanical behavior of two-dimensional (2D) materials across 2D phase changes is unknown, and the finite temperature (T) elasticity of paradigmatic SnSe monolayers—ferroelectric 2D materials turning paraelectric as their unit cell turns from a rectangle into a square—is described here in a progressive manner. To begin with, their zero–T total energy landscape gives way to (Boltzmann-like) averages from which the elastic behavior is determined. Furthermore, these estimates are complemented with results from the strain-fluctuation method, which employs the energy landscape or ab initio molecular dynamics data. All approaches capture the coalescence of elastic moduli < C 11 (T) > = < C 22 (T) > due to the structural transformation. The broad evolution and sudden changes of elastic parameters < C 11 (T) >, < C 22 (T) >, and < C 12 (T) > of these atomically thin phase-change membranes establishes a heretofore overlooked connection among 2D materials and soft matter.

2-dimensional systems↗
DOE OSTI2021

NLR diversity and candidate fusiform rust resistance genes in loblolly pine

Resistance to fusiform rust disease in loblolly pine (Pinus taeda) is a classic gene-for-gene system. Early resistance gene mapping in the P. taeda family 10-5 identified RAPD markers for a major fusiform rust resistance gene, Fr1. More recently, single nucleotide polymorphism (SNP) markers associated with resistance were mapped to a full-length gene model in the loblolly pine genome encoding for a nucleotide-binding site leucine-rich repeat (NLR) protein. NLR genes are one of the most abundant gene families in plant genomes and are involved in effector-triggered immunity. Inter- and intraspecies studies of NLR gene diversity and expression have resulted in improved disease resistance. To characterize NLR gene diversity and discover potential resistance genes, we assembled de novo transcriptomes from 92 loblolly genotypes from across the natural range of the species. In these transcriptomes, we identified novel NLR transcripts that are not present in the loblolly pine reference genome and found significant geographic diversity of NLR genes providing evidence of gene family evolution. We designed capture probes for these NLRs to identify and map SNPs that stably cosegregate with resistance to the SC20-21 isolate of Cronartium quercuum f.sp. fusiforme (Cqf) in half-sib progeny of the 10-5 family. We identified 10 SNPs and 2 quantitative trait loci associated with resistance to SC20-21 Cqf. The geographic diversity of NLR genes provides evidence of NLR gene family evolution in loblolly pine. The SNPs associated with rust resistance provide a resource to enhance breeding and deployment of resistant pine seedlings.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2014

Duplications and losses in gene families of rust pathogens highlight putative effectors

Rust fungi are a group of fungal pathogens that cause some of the world's most destructive diseases of trees and crops. A shared characteristic among rust fungi is obligate biotrophy, the inability to complete a lifecycle without a host. This dependence on a host species likely affects patterns of gene expansion, contraction, and innovation within rust pathogen genomes. The establishment of disease by biotrophic pathogens is reliant upon effector proteins that are encoded in the fungal genome and secreted from the pathogen into the host's cell apoplast or within the cells. This study uses a comparative genomic approach to elucidate putative effectors and determine their evolutionary histories. We used OrthoMCL to identify nearly 20,000 gene families in proteomes of 16 diverse fungal species, which include 15 basidiomycetes and one ascomycete. We inferred patterns of duplication and loss for each gene family and identified families with distinctive patterns of expansion/contraction associated with the evolution of rust fungal genomes. To recognize potential contributors for the unique features of rust pathogens, we identified families harboring secreted proteins that: (i) arose or expanded in rust pathogens relative to other fungi, or (ii) contracted or were lost in rust fungal genomes. While the origin of rust fungi appears to be associated with considerable gene loss, there are many gene duplications associated with each sampled rust fungal genome. We also highlight two putative effector gene families that have expanded in Cqf that we hypothesize have roles in pathogenicity.

60 APPLIED LIFE SCIENCES↗
NASA NTRS2007

Hinode Observations of the Onset Stage of a Solar Filament Eruption

We used Hinode X-Ray Telescope (XRT) and Solar Optical Telescope (SOT) filtergraph (FG) Stokes-V magnetogram observations, to study the early onset of a solar eruption that includes an erupting filament that we observe in TRACE EUV images. The filament undergoes a slow rise for at least 20min prior to its fast eruption and strong soft X-ray (SXR) flaring; such slow rises have been previously reported, and the new Hinode data elucidate the physical processes occurring during this period. XRT images show that during the slow-rise phase, an SXR sigmoid forms from apparent reconnection low in the sheared core field traced by the filament, and there is a low-level intensity peak in both EUV and SXRs during the slow rise. MDI and SOT FG Stokes-V magnetograms show that the pre-emption filament is along a neutral line between opposing-polarity enhanced network cells, and the SOT magnetograms show that these opposing fields are flowing together and canceling for at least six hours prior to eruption. From the MDI data we measured the canceling network fields to be approx. 40 G, and we estimated that approx. 10(exp 19)Mx of flux canceled during the five hours prior to eruption; this is only approx.5% of the total flux spanned by the eruption and flare, but apparently its tether-cutting cancellation was enough to destabilize the sigmoid field holding the filament and resulted in that field's eruption.

Sterling, Alphonse C.↗
NASA NTRS2007

Hinode Observations of the Onset Stage of a Solar Filament Eruption

We use Hinode X-Ray Telescope (XRT) and Solar Optical Telescope (SOT) filtergraph (FG) Stokes-V magnetogram observations, to study the early onset of a solar eruption that includes an erupting filament that we observe in TRACE EUV images. The filament undergoes a slow rise for at least 20 min prior to its fast eruption and strong soft X-ray flaring; such slow rises have been previously reported, and the new Hinode data elucidate the physical processes occurring during this period. XRT images show that during the slow-rise phase, a soft X-ray (SXR) sigmoid forms from apparent reconnection low in the sheared core field traced by the filament, and there is a low-level intensity peak in both EUV and SXRs during the slow rise. MDI and SOT FG/V magnetograms show that the pre-eruption filament is along a neutral line between opposing-polarity enhanced network cells, and the SOT magnetograms show that these opposing fields are flowing together and canceling for at least six hours prior to eruption. From the MDI data we measure the canceling network fields to be approx. 40 G, and we estimate that approx. 10(exp 19) Mx of flux canceled during the five hours prior to eruption; this is only approx. 5% of the total flux spanned by the eruption and flare, but apparently its tether-cutting cancellation was enough to destabilize the sigmoid field holding the filament and resulted in that field's eruption.

Sterling, Alphonse C.↗
NASA NTRS2006

Overview of the Solar-B Mission

The Solar-B mission is a collaboration between the Japan Aerospace Exploration Agency, Institute of Space and Astronautical Science, the National Aeronautics and Space Administration (NASA) and the Particle Physics and Astronomy Research Council (PPARC) of the United Kingdom and the European Space Agency. The principal scientific goals of the mission are to understand the processes of magnetic field generation, transport and ultimate dissipation of solar magnetic fields and how the release of magnetic energy is responsible for the heating and structuring of the chromosphere and corona. The scientific payload consists of three instruments: the Solar Optical Telescope that consists of the Optical Telescope Assembly and the Focal Plane Package (FPP), the X-ray Telescope and the EUV Imaging Spectrometer Each instrument is a result of the combined talents of all the members of the international team and their design and performance is described in separate papers in this session. The instruments are designed to work together as an 'observatory' simultaneously studying the target, at which the spacecraft is pointed, at different levels in the atmosphere. The spacecraft is scheduled for launch in September 2006 from the Uchinoura Space Center into a 600 km circular, sun-synchronous, polar orbit with a nominal elevation of 97.9 degrees. The orbit provides at least two morning and two evening contacts in Japan. Morning contacts are used for recovering quick look science data and the evening contacts for uploading commands. In addition ESA will provide 15 contacts per day from the Norwegian high latitude (78deg 14' N) ground station at Svalbard. The data downloads are transmitted to the ISAS Sirius database. They will be reformatted into FITS files and archived as Level 0 data on the ISAS DARTS system and made available to the scientific community. Scientific operations will be conducted from the IS AS facility located in Sagamihara, Japan. They are separated into planning, implementation and archiving. The planning process involves monthly, weekly and daily planning meetings. All scientific data will be made available after the first six month approximately one week after its collection.

Davis, John M.↗
NASA NTRS2006

The Solar-B Mission: First Light, Future Plans and Community Participation

The Solar-B spacecraft was launched from the Uchinoura Space Center into a circular, sun-synchronous, polar orbit by the Japanese Aerospace Exploration Agency in late September 2006. The spacecraft carries thee scientific instruments designed to follow the flow of magnetic energy from the photosphere to the corona to improve our understanding of both steady state and transient energy release. This goal will be achieved through coordinated observations of three highly advanced solar telescopes developed cooperatively by teams from Japan, the United States and the United Kingdom. The three telescopes are a 0.5m aperture, diffraction limited, solar optical telescope (SOT), an X-ray telescope (XRT) designed for full sun imaging with 1.0 arcsec pixels and an EUV imaging spectrometer (EIS) with an order of magnitude improvement in sensitivity over past instruments. The SOT focal plane contains three instruments, a spectropolarimeter for measuring vector magnetic fields, a broadband filter imager for recording images of the photosphere and chromosphere at the highest resolution the telescope is capable of, and a narrow band filter imager that will record Doppler grams and vector magnetograms. The XRT has broad temperature coverage and a spatial a resolution three times as high as Yohkoh. EIS covers a broad range of transition region and coronal temperatures in two spectral bands. Both XRT and EIS have 2 arcsec spatial resolution (1 arcsec pixels). Instrument first light occurred after five weeks on orbit to allow for out gassing and the opening of the telescopes doors. The initial observation sequences are designed to test the functionality of the different operating modes and for calibration. After this commissioning phase is complete a series of observations are planned to demonstrate the ability of the instruments to meet NASA's mission minimum success criteria. Data is downloaded every orbit to the Norwegian high latitude ground station at Svalbard. The data are transmitted to ISAS where they are reformatted into FITS files and archived as Level 0 data on the ISAS DARTS system. Once the initial observation period is complete, approximately six months after launch, the mission data will be open and freely available to researchers shortly after receipt at the DARTS data archive hosted in Japan and at NASA s Solar Data Analysis Center at the Goddard Space Flight Center. Scientific operations will be conducted from the ISAS facility in Sagamihara, Japan and the observatory will become available for performing joint operations with both ground and space based instruments and for conducting observing programs proposed by non-team members. This process will be described together with a status report from the initial operation of the observatory, showing examples of the first observations.

Davis, John M.↗
NASA NTRS2003

Beyond Solar-B: MTRAP, the Magnetic Transition Region Probe

The next generation of solar missions will reveal and measure fine-scale solar magnetic fields and their effects in the solar atmosphere at heights, small scales, sensitivities, and fields of view well beyond the reach of Solar-B. The necessity for, and potential of, such observations for understanding solar magnetic fields, their generation in and below the photosphere, and their control of the solar atmosphere and heliosphere, were the focus of a science definition workshop, 'High-Resolution Solar Magnetography from Space: Beyond Solar-B,' held in Huntsville Alabama in April 2001. Forty internationally prominent scientists active in solar research involving fine-scale solar magnetism participated in this Workshop and reached consensus that the key science objective to be pursued beyond Solar-B is a physical understanding of the fine-scale magnetic structure and activity in the magnetic transition region, defined as the region between the photosphere and corona where neither the plasma nor the magnetic field strongly dominates the other. The observational objective requires high cadence (less than 10s) vector magnetic field maps, and spatially resolved spectra from the IR, visible, vacuum UV, to the EUV at high resolution (less than 50km) over a large FOV (approximately 140,000 km). A polarimetric resolution of one part in ten thousand is required to measure transverse magnetic fields of less than 30G. The latest SEC Roadmap includes a mission identified as MTRAP to meet these requirements. Enabling technology development requirements include large, lightweight, reflecting optics, large format sensors (16K x 16K pixels) with high QE at 150 nm, and extendable spacecraft structures. The Science Organizing Committee of the Beyond Solar-B Workshop recommends that: (1) Science and Technology Definition Teams should be established in FY04 to finalize the science requirements and to define technology development efforts needed to ensure the practicality of MTRAP's observational goals; (2) The necessary technology development funding should be included in Code S budgets for FY06 and beyond to prepare MTRAP for a new start no later than the nominal end of the Solar-B mission, around 2010.

Davis, John M.↗
NASA NTRS2002

On Determination of 3D Morphology and Plasma Properties of the Solar Corona

An earlier analysis preformed and published will be revisited and applied to SECCHI's observations. Using coronal models and imaging-rendering techniques we will investigate several important facts regarding the solar stereographic mission. A synthesized image will be presented formed from integrating the emission from the volume elements along the line-of-sight path through a three-dimensional volume. We used analysis of pairs of these synthesized images with various angular perspectives to investigate the effect of angular separation on mission objectives. The resulting images and analysis provide guidelines for developing a stereographic mission analysis program.

Gary, G. Allen↗
NASA NTRS2002

Mechanisms for the Dissipation of Alfven Waves in Near-Earth Space Plasma

Alfven waves are a major mechanism for the transport of electromagnetic energy from the distant part of the magnetosphere to the near-Earth space. This is especially true for the auroral and polar regions of the Earth. However, the mechanisms for their dissipation have remained illusive. One of the mechanisms is the formation of double layers when the current associated with Alfven waves in the inertial regime interact with density cavities, which either are generated nonlinearly by the waves themselves or are a part of the ambient plasma turbulence. Depending on the strength of the cavities, weak and strong double layers could form. Such double layers are transient; their lifetimes depend on that of the cavities. Thus they impulsively accelerate ions and electrons. Another mechanism is the resonant absorption of broadband Alfven- wave noise by the ions at the ion cyclotron frequencies. But this resonant absorption may not be possible for the very low frequency waves, and it may be more suited for electromagnetic ion cyclotron waves. A third mechanism is the excitation of secondary waves by the drifts of electrons and ions in the Alfven wave fields. It is found that under suitable conditions, the relative drifts between different ion species and/or between electrons and ions are large enough to drive lower hybrid waves, which could cause transverse accelerations of ions and parallel accelerations of electrons. This mechanism is being further studied by means of kinetic simulations using 2.5- and 3-D particle-in-cell codes. The ongoing modeling efforts on space weather require quantitative estimates of energy inputs of various kinds, including the electromagnetic energy. Our studies described here contribute to the methods of determining the estimates of the input from ubiquitous Alfven waves.

Singh, Nagendra↗
NASA NTRS2000

Overview of the Solar Ultraviolet Magnetograph Investigation

Traditional magnetographs measure the solar magnetic field at the visible "surface" of the Sun, the photosphere. The Solar Ultraviolet Magnetograph Investigation (SUMI) is a design study for an instrument to measure the solar magnetic field higher in the atmosphere, in the upper chromosphere and in the transition region at the base of the corona. The magnetic pressure at these levels is much stronger than the gas pressure (in contrast to the situation at the photosphere), and so the field is much more dynamic. Observations in this region will significantly improve our understanding of the physical processes driving flares and heating in the Sun's upper atmosphere. The instrument will incorporate new technologies to achieve the polarization efficiencies required to isolate the magnetic lines (Civ at 155nm and MgII at 280nm) to be observed in the UV. We describe the scientific goals, the SUMI baseline design and the optical components that are being developed for a sounding rocket program.

West, Edward A.↗
NASA NTRS2000

The Solar-B Mission

The Solar-B mission is a joint enterprise between Japan, the United States of America and the United Kingdom. The collaboration is led by ISAS, the Japanese Institute for Space and Astronautical Science (ISAS), NASA and PPARC (Particle Physics and Astrophysics Research Council) play supporting roles in the development of the scientific objectives and provision of the scientific instruments. The mission's primary objective is to conduct a systems study of the solar atmosphere through the acquisition of coordinated measurements of the photosphere, the transition region/low corona and the upper corona using three instruments: an optical telescope, an extreme ultraviolet imaging spectrometer and a soft x-ray telescope. Drs. Saku Tsuneta (NAOJ) and Alan Title (LMSAL) lead the optical imaging team. The optical telescope is a 50-cm aperture, diffraction limited, Gregorian. The focal plane package will record high resolution images, Dopplergrams, and vector magnetic fields on spatial scales dominated by elemental photospheric flux tubes, and over a field of view large enough to contain small active regions. Drs. Tetsuya Watanabe, Len Culhane (MSSL) and George Doschek (NRL) led the EUV imaging and spectroscopy team. The EUV telescope has a 15-cm primary mirror feeding a toroidal grating. The optics have multiplayer coatings which select two wavebands between 180-204 A and 250-290 A. Drs. Kiyoto Shibasaki (NAOJ) and Leon Golub (SAO) lead the X-ray imaging team. The x-ray telescope will provide full disk, soft x-ray images with twice the spatial resolution of the Yohkoh SXT and enhanced sensitivity to longer (>40 A) wavelengths. The launch of Solar-B, into a sun-synchronous orbit, is scheduled for August 2004. Solar-B is the second mission in the Sun-Earth Connection, Solar-Terrestrial Probe Program which is managed by the Goddard Space Flight Center. The Science Directorate of the Marshall Space Flight Center manages the Solar-B Project for the ST Probe Project Office. This paper discusses the objectives, specifications, and design of the scientific instruments as presented at the Preliminary Design Review held at MSFC in May 2000.

Davis, John M.↗
NASA NTRS2000

SUMI: The Solar Ultraviolet Magnetograph Investigation

A major focus of solar physics is the measurement of the temporal and spatial variability of solar magnetic fields from the photosphere into the lower corona, together with the study of how their behavior produces the dynamic phenomena in this region such as flares and Coronal Mass Injection (CMEs). Considerable success has been achieved in the characterization of the full vector field in the photosphere, where P, the ratio of the gas pressure to the magnetic pressure, is greater than or equal to 1. At higher levels in the atmosphere where beta is less than 1, the magnetic field (through the Lorentz force) controls the structure and dynamics of the solar atmosphere, and rapid changes in structure with release of energy become possible. However, observations of the field at these higher levels have proven to be difficult, placing a serious limitation on our understanding of the physical processes occurring there. This poster will discuss the Solar Ultraviolet Magnetograph Investigation (SUMI), a hardware development study for an instrument capable of measuring the polarization in ultraviolet lines of C IV and Mg II formed in the transition region and upper chromosphere. We are currently developing optical technologies necessary to build an instrument that will achieve a major advance in performance over that of earlier attempts (e.g., SMM/UVSP). Initially configured as a sounding rocket payload, such a UV magnetograph would allow us to make exploratory measurements extending the observation of solar magnetic fields into new and dynamic regimes. This work is supported by NASA through the SEC Program in Solar Physics and the program for Technology Development for Explorer Missions and Sofia.

Davis, John M.↗
NASA NTRS1998

Report on New Mission Concept Study: Stereo X-Ray Corona Imager Mission

Studies of the three-dimensional structure and dynamics of the solar corona have been severely limited by the constraint of single viewpoint observations. The Stereo X-Ray Coronal Imager (SXCI) mission will send a single instrument, an X-ray telescope, into deep space expressly to record stereoscopic images of the solar corona. The SXCI spacecraft will be inserted into a approximately 1 AU heliocentric orbit leading Earth by approximately 25 deg at the end of nine months. The SXCI X-ray telescope forms one element of a stereo pair, the second element being an identical X-ray telescope in Earth orbit placed there as part of the NOAA GOES program. X-ray emission is a powerful diagnostic of the corona and its magnetic fields, and three dimensional information on the coronal magnetic structure would be obtained by combining the data from the two X-ray telescopes. This information can be used to address the major solar physics questions of (1) what causes explosive coronal events such as coronal mass ejections (CMEs), eruptive flares and prominence eruptions and (2) what causes the transient heating of coronal loops. Stereoscopic views of the optically thin corona will resolve some ambiguities inherent in single line-of-sight observations. Triangulation gives 3D solar coordinates of features which can be seen in the simultaneous images from both telescopes. As part of this study, tools were developed for determining the 3D geometry of coronal features using triangulation. Advanced technologies for visualization and analysis of stereo images were tested. Results of mission and spacecraft studies are also reported.

Liewer, Paulett C.↗
NASA NTRS1994

Prediction of solar flares for the Space Exploration Initiative

The 21st century is likely to see the start of the manned exploration and settlement of the inner solar system. NASA's plans for this endeavor are focused upon the Space Exploration Initiative which calls for a return to the Moon, to stay, followed by manned missions to Mars. To execute these missions safely provides solar physics with both a challenge and an opportunity. As the past solar maximum has clearly demonstrated, the Sun, through the solar flare process, is capable of generating and accelerating to high energies large fluxes of protons whose cumulative dose to unprotected astronauts can be fatal. It will be the responsibility of solar physicists to develop an accurate physical description of the mechanisms of flare energy storage and release, and of particle acceleration and propagation through interplanetary space upon which to base a sound method of flare and energetic particle prediction.

Davis, John M.↗