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DeVincenzi, D.

Publications and source records attributed to DeVincenzi, D..

At least 19 records

Incorporating Biological Knowledge into Evaluation of Casual Regulatory Hypothesis

Biological data can be scarce and costly to obtain. The small number of samples available typically limits statistical power and makes reliable inference of causal relations extremely difficult. However, we argue that statistical power can be increased substantially by incorporating prior knowledge and data from diverse sources. We present a Bayesian framework that combines information from different sources and we show empirically that this lets one make correct causal inferences with small sample sizes that otherwise would be impossible.

Chrisman, Lonnie

Deuterated PAHs in Space

The cosmic deuterium to hydrogen (D/H) ratio is of key importance from a cosmological and stellar evolution perspective since deuterium originates from big-bang nucleosynthesis and is destroyed by stellar thermonuclear reactions. Further, from the interstellar perspective, the galactic distribution of deuterium and the D/H ratio among various molecular species also traces interstellar chemical evolution. Over the past few decades, radio observations have enabled the study of a handful of small, deuterated interstellar species. However, the number of deuterated species detected and environments probed are limited, raising issues of selection effects that hamper generalization and applications to other environments. Infrared spectroscopy of the interstellar medium offers a distinct advantage in this regard as the extent of deuteration of entire chemical families, rather than one species, can be probed. These observations require spaceborne telescopes because the molecular vibrations involving D which produce the strongest IR bands fall in spectral regions which are obscured by terrestrial CO2 absorption. Here we report the tentative detection of the C-D stretching vibration from deuterated interstellar polycyclic aromatic hydrocarbons in the Orion nebula. Since the PAH emission features are widespread and probe many different types of cosmic environments, follow up observations of deuterated PAHs will provide fundamental, far reaching new insight and perspective into galactic and extragalactic processes.

Peeters, Els

The AstroBiology Explorer (ABE) MIDEX Mission Concept: Identifying Organic Molecules in Space

The Astrobiology Explorer (ABE) is a MIDEX mission concept, currently under Concept Phase A study at NASA's Ames Research Center in collaboration with Ball Aerospace & Technologies, Corp., and managed by NASA's Jet Propulsion Laboratory. ABE will conduct infrared spectroscopic observations to address important problems in astrobiology, astrochemistry, and astrophysics. The core observational program would make fundamental scientific progress in understanding the distribution, identity, and evolution of ices and organic matter in dense molecular clouds, young forming stellar systems, stellar outflows, the general diffuse ISM, HII regions, Solar System bodies, and external galaxies. The ABE instrument concept includes a 0.6 m aperture Ritchey-Chretien telescope and three moderate resolution (R = 2000-3000) spectrometers together covering the 2.5-20 micron spectral region. Large format (1024 x 1024 pixel) IR detector arrays will allow each spectrometer to cover an entire octave of spectral range per exposure without any moving parts. The telescope will be cooled below 50 K by a cryogenic dewar shielded by a sunshade. The detectors will be cooled to approx. 7.5 K by a solid hydrogen cryostat. The optimum orbital configuration for achieving the scientific objectives of the ABE mission is a low background, 1 AU Earth driftaway orbit requiring a Delta II launch vehicle. This configuration provides a low thermal background and allows adequate communications bandwidth and good access to the entire sky over the approx. 1.5 year mission lifetime.

Ennico, Kimberly

Infrared Spectroscopy of Matrix-Isolated Polycyclic Aromatic Compounds and their Ions: Polycyclic Aromatic Nitrogen Heterocycles - 6

The matrix-isolation technique has been employed to measure the mid-infrared spectra of several polycyclic aromatic nitrogen heterocycles in both neutral and cationic forms. The species studied include: 7,8 benzoquinoline (C13H9N); 2-azapyrene (C15H9N); 1- and 2-azabenz(a)anthracene (C17H11N); and 1-, 2-, and 4-azachrysene (also C17H11N). The experimentally measured band frequencies and intensities for each molecule are tabulated and compared with their theoretically calculated values computed using density functional theory at the B3LYP/4-31G level. The overall agreement between experiment and theory is quite good, in keeping with previous investigations involving the parent aromatic hydrocarbons. Several interesting spectroscopic trends are found to accompany nitrogen substitution into the aromatic framework of these compounds. First, for the neutral species, the nitrogen atom produces a significant increase in the total integrated infrared intensity across the 1600 - 1100/cm region and plays an essential role in the molecular vibration that underlies an uncharacteristically intense, discrete feature that is observed near 1400/cm in the spectra of 7,8 benzoquinoline, 1-azabenz(a)anthracene, and 4-azachrysene. The origin of this enhanced infrared activity and the nature of the new 1400/cm vibrational mode are explored. Finally, in contrast to the parent hydrocarbon species, these aromatic nitrogen heterocycles possess a significant permanent dipole moment. Consequently, these dipole moments and the rotational constants are reported for these species in their neutral and ionized forms.

Mattioda, A. L.

Biogeochemical Cycles of Carbon and Sulfur

The elements carbon (C) and sulfur (S) interact with each other across a network of elemental reservoirs that are interconnected by an array of physical, chemical and biological processes. These networks are termed the biogeochemical C and S cycles. The compounds of C are highly important, not only as organic matter, but also as atmospheric greenhouse gases, pH buffers in seawater, oxidation-reduction buffers virtually everywhere, and key magmatic constituents affecting plutonism and volcanism. The element S assumes important roles as an oxidation-reduction partner with C and Fe in biological systems, as a key constituent in magmas and volcanic gases, and as a major influence upon pH in certain environments. This presentation describes the modern biogeochemical C and S cycles. Measurements are described whereby stable isotopes can help to infer the nature and quantitative significance of biological and geological processes involved in the C and S cycles. This lecture also summarizes the geological and climatologic aspects of the ancient C and S cycles, as well as the planetary and extraterrestrial processes that influenced their evolution over millions to billions of years.

DesMarais, David J.

Robotic Exploration: The Role of Science Autonomy

Historical mission operations have involved: (1) commands transmitted to the craft; (2) execution of commands; (3) return of scientific data; (4) evaluation of these data by scientists; and (5) recommendations for future mission activity by scientists. This cycle is repeated throughout the mission with command opportunities once or twice per day. For a rover, this historical cycle is not amenable to rapid long range traverses or rapid response to any novel or unexpected situations.

Roush, Ted L.

Assimilation of TES Water Vapor Observations

The Thermal Emission Spectrometer (TES) on the Mars Global Surveyor has made extensive observations of the Martian atmospheric water vapor column since the beginning of its mapping mission in early 1999. The results show broad agreement with the earlier Viking Mars Atmospheric Water Detector (MAWD) results (though column amounts in southern summer are higher, perhaps due to dust obscuration during the Viking mission). General circulation model (GCM) simulations of the annual Martian water cycle also show broad agreement with the TES observations. Details of the simulations depend on cloud and boundary layer parameterizations and on the adsorbing properties of the regolith. In order to make quantitative assessments of this agreement and to obtain observational values for the required physical parameters, a tracer transport data assimilation model has been developed. Model winds are derived from both tracer measurements and retrieved atmospheric temperature structures, providing a useful check of the underlying dynamical core of the GCM. By allowing detailed intercomparison between spacecraft and ground-based observations of Martian water vapor, the model should also contribute significantly to our understanding of the diurnal water cycle.

Houben, Howard

Titan: A Place with Atmosphere

Titan is the largest moon of the planet Saturn and is the only moon in the solar system with a substantial atmosphere. Its atmosphere is mostly made of nitrogen and has a pressure one and a half times larger than sea level pressure on Earth. In these respects Titan's atmosphere is the closest twin to Earth's. Methane is found in Titan's atmosphere and results in the formation of a organic smog layer in the atmosphere via chemistry that is similar to the current theories for the origin of life on Earth. Unfortunately, Titan is much too cold for water to be liquid and life is therefore unlikely, earth-like life that is. Titan's atmosphere has a greenhouse effect which is much stronger than the Earth's. However the organic smog layer produces an anti-greenhouse effect that cuts the greenhouse warming in half. The surface of Titan remains unknown, hidden by the thick smog layer, but it may be an ocean of liquid methane and ethane or maybe just lakes. When the NASA/ESA mission to the Saturn System, Cassini/Huygens reaches Saturn in a few years it will launch a probe that to the surface of Titan and show us this world that is strange and yet in many ways similar to our own.

McKay, Christopher P.

Concentrating Antarctic Meteorites on Blue ice Fields: The Frontier Mountain Meteorite Trap

The collection of meteorites in Antarctica has greatly stimulated advancement in the field of meteoritics by providing the community with significant numbers of rare and unique meteorites types and by yielding large numbers of meteorites that sample older infall epochs (Grady et al., 1998). The majority of Antarctic meteorites are found on blue ice fields, where they are thought to be concentrated by wind and glacial drift (cf. Cassidy et al., 1992). The basic "ice flow model" describes the concentration of meteorites by the stagnation or slowing of ice as it moves against a barrier located in a zone with low snow accumulation. However, our limited knowledge of the details of the actual concentration mechanisms prevents establishing firm conclusions concerning the past meteorite flux from the Antarctic record (Zolensky, 1998). The terrestrial ages of Antarctic meteorites indicate that their concentration occurs on time scales of tens to hundreds of thousands of years (Nishiizumi et al., 1989). It is a challenge to measure a mechanism that operates so slowly, and since such time scales can span more than one glacial epoch one cannot assume that the snow accumulation rates, ice velocities and directions, etc. that are measured today are representative of those extant over the age of the trap. Testing the basic "ice flow model" therefore requires the careful measurement of meteorite locations, glacialogical ice flow data, ice thicknesses, bedrock and surface topology, ice ablation and snow accumulation rates, and mass transport by wind over an extended period of time in a location where these quantities can be interpreted in the context of past glacialogical history.

Sandford, Scott A.

From Field to Laboratory: A New Database Approach for Linking Microbial Field Ecology with Laboratory Studies

The Ames Exobiology Culture Collection Database (AECC-DB) has been developed as a collaboration between microbial ecologists and information technology specialists. It allows for extensive web-based archiving of information regarding field samples to document microbial co-habitation of specific ecosystem micro-environments. Documentation and archiving continues as pure cultures are isolated, metabolic properties determined, and DNA extracted and sequenced. In this way metabolic properties and molecular sequences are clearly linked back to specific isolates and the location of those microbes in the ecosystem of origin. Use of this database system presents a significant advancement over traditional bookkeeping wherein there is generally little or no information regarding the environments from which microorganisms were isolated. Generally there is only a general ecosystem designation (i.e., hot-spring). However within each of these there are a myriad of microenvironments with very different properties and determining exactly where (which microenvironment) a given microbe comes from is critical in designing appropriate isolation media and interpreting physiological properties. We are currently using the database to aid in the isolation of a large number of cyanobacterial species and will present results by PI's and students demonstrating the utility of this new approach.

Bebout, Leslie

Performance of the SBRC 190, a cryogenic multiplexer for photoconductor arrays

The SBRC 190 cryogenic readouts were developed for use with far-infrared arrays of Ge:Sb and Ge:Ga photoconductor detectors. The SBRC 190 provides an AC-coupled CTIA (capacitance transimpedance amplifier) unit cell for each detector and multiplexes up to 32 detectors. This paper presents our test results characterizing and optimizing the performance of these novel devices. We will discuss their basic behavior in addition to describing the trade-offs inherent in different sampling strategies.

Dotson, Jessie L.

Specification and Design of the SBRC-190: A Cryogenic Multiplexer for Far Infrared Photoconductor Detectors

Arrays of far-infrared photoconductor detectors operate at a few degrees Kelvin and require electronic amplifiers in close proximity. For the electronics, a cryogenic multiplexer is ideal to avoid the large number of wires associated with individual amplifiers for each pixel, and to avoid adverse effects of thermal and radiative heat loads from the circuitry. For low background applications, the 32 channel CRC 696 CMOS device was previously developed for SIRTF, the cryogenic Space Infrared Telescope Facility. For higher background applications, we have developed a similar circuit, featuring several modifications: (a) an AC coupled, capacitive feedback transimpedence unit cell, to minimize input offset effects, thereby enabling low detector biases, (b) selectable feedback capacitors to enable operation over a wide range of backgrounds, and (c) clamp and sample & hold output circuits to improve sampling efficiency, which is a concern at the high readout rates required. We describe the requirements for and design of the new device.

Erickson, E. F.

Diffraction Effects in a Grating Spectrometer

This paper describes a numerical study of diffraction effects in the AIRES optical system using GLAD by Applied Optics Research. AIRES (or Airborne Infrared Echelle Spectrometer) employs two gratings in series. The small, first-order (i.e., predisperser) grating sorts orders for the large, high-order echelle grating, thus providing moderately high spectral resolution over 3.6 octaves in wavelength. The AIRES' optical design includes three field stops (i.e., a circular aperture and two long, narrow slits) and four pupil stops. A detailed diffraction analysis is required to evaluate critical trade-offs between spectral resolution, optical throughput, detector background, scattered light, and system size and weight. Such an analysis must consider diffraction effects at the pupil stops (edge diffraction), at the field stops (spatial filtering), and at intermediate positions where other optical elements are located. The effects of slit width, slit length, oversizing of the second slit relative to the first, baffling at the Lyot stop and subsequent pupil stops, and the necessity for oversizing other optical elements are presented and discussed. It is found that for narrow slits, the downstream energy distribution is significantly broadened relative to that for large slits, where telescope diffraction dominates, leading to significantly more light loss than anticipated, unless other key optical elements are oversized. The importance of performing a proper diffraction analysis is emphasized and the suitability of GLAD for this task is discussed.

Haas, Michael R.

The Laboratory Production of Complex Organic Molecules in Simulated Interstellar Ices

Much of the volatiles in interstellar dense clouds exist in ices surrounding dust grains. Their low temperatures preclude most chemical reactions, but ionizing radiation can drive reactions that produce a suite of new species, many of which are complex organics. The Astrochemistry Lab at NASA-Ames studies the UV radiation processing of interstellar ice analogs to better identify the resulting products and establish links between interstellar chemistry, the organics in meteorites, and the origin of life on Earth. Once identified, the spectral properties of the products can be quantified to assist with the search for these species in space. Of particular interest are findings that UV irradiation of interstellar ice analogs produces molecules of importance in current living organisms, including quiriones, amphiphiles, and amino acids. Quinones play a variety of roles including electron transport and are used by all organisms. Studies show that quinones should be made wherever polycyclic aromatic hydrocarbons are irradiated in interstellar ices (Bernstein et al. 2001). Amphiphiles are also made when mixed molecular ices are irradiated. These amphiphiles self-assemble into membrane-walled vesicles when put in liquid water (Dworkin et al. 2001). Ice irradiation can also produce (Bernstein et al. 2002) and destroy amino acids (Ehrenfreund et al. 2001). Many of the same processes thought to make organics in space should yield products highly enriched in deuterium (D) (Sandford et al. 2001). The high D/H ratios in some interstellar species, and the knowledge that many of the organics in primitive meteorites are D-enriched, suggests that such linkages do exist. By using D as a tracer, we expect to learn more about the different chemical processes occurring in space and their relative importance in the production of different organic compounds and delivery to planetary surfaces.

Dworkin, Jason P.

Large Format Si:As IBC Array Performance for NGST and Future IR Space Telescope Applications

A mid-IR (5-30micrometer) instrument aboard a cryogenic space telescope can have an enormous impact in resolving key questions in astronomy and cosmology. A space platform's greatly reduced thermal backgrounds (compared to airborne or ground-based platforms), allow for more sensitive observations of dusty young galaxies at high redshifts, star formation of solar-type stars in the local universe, and formation and evolution of planetary disks and systems. The previous generation's largest, in sensitive IR detectors at these wavelengths are 256x256 pixel Si:As Impurity Band Conduction (IBC) devices built by Raytheon Infrared Operations (RIO) for the Space Infrared Telescope Facility/Infrared Array Camera (SIRTF)/(IRAC) instrument. RIO has successfully enhanced these devices, increasing the pixel count by a factor of 16 while matching or exceeding SIRTF/IRAC device performance. NASA-ARC in collaboration with RIO has tested the first high performance large format (1024x 1024) Si:As IBC arrays for low background applications, such as for the middle instrument on Next Generation Space Telescope (NGST) and future IR Explorer missions. These hybrid devices consist of radiation hard SIRTF/IRAC-type Si:As IBC material mated to a readout multiplexer that has been specially processed for operation at low cryogenic temperatures (below 10K), yielding high device sensitivity over a wavelength range of 5-28 micrometers. We present laboratory testing results from these benchmark, devices. Continued development in this technology is essential for conducting large-area surveys of the local and early universe through observation and for complementing future missions such as NGST, Terrestrial Planet Finder (TPF), and Focal Plane Instruments and Requirement Science Team (FIRST).

Ennico, Kimberly

Astrobiology

Astrobiology is the study of the origins, evolution and distribution of life in the universe. It provides a biological perspective to many areas of NASA research, linking such endeavors as the search for habitable planets beyond our solar system, exploration missions to Mars and Europa, and efforts to understand the origin and early evolution of life. Astrobiology addresses three fundamental questions: How does life begin and develop? Does life exist elsewhere in the universe? What is the future of life on Earth and beyond? This talk will address our concepts about the definition of life, how life might have begun, and how our blaspheme and planet have co-evolved for billions of years. The talk will explore how the perspectives gained from interdisciplinary research in the biological, geological and space sciences will prepare us to search for habitable environments and biospheres elsewhere in the Universe.

DesMarais, David

Current Status of High Performance Large Format Si:As IBC Detectors for SOFIA-like Applications

Airborne and space telescope astronomical observations in the 5-25 micrometer wavelength region, are critical for understanding the physical conditions, composition, chemistry, and excitation of many environments in the interstellar medium, external galaxies, solar system objects, extra-solar systems, and stars. The scientific impact is particularly unique in the 5-8 micrometer and 14-25 micrometer regions which are inaccessible or poorly observed from ground-based observatories. Large-format area mid-infrared (MIR) detectors sensitive over these wavelengths and operable under moderate backgrounds (greater than 10(circumflex)6 e-/s at R=2000, 10(micrometers)) are essential for efficient large-area survey imaging and for taking moderate resolution spectra over a large spectral range. Both SOFIA and passively cooled Explorer observatories could benefit from this technology. Current first-light SOFIA instruments use small-format MIR FPA's of sizes 128x128 and 256x256, With the collaboration of Raytheon Infrared Operations (RIO), NASA-ARC has been testing the first device of this kind, a combination of 1) the ALADDIN III readout multiplexer, cryo-processed for 6K operation, with 2) SIRTF IRAC-like Sides IBC detector material. designed for higher QE and low dark current. Here we report requirements. design, and initial fabrication and testing of the first 1024x1024 Si:As IBC mid-IR detector array for these conditions. This device has exhibited low dark current, moderate noise levels, and greater than 200,000 electron linear well size at 6K operation. We conclude with suggestions for future device development for optimal performance under moderate background, SOFIA- and low Earth orbit observing conditions.

Ennico, Kimberly

A New Energy Source for Organic Synthesis in Europa's Surface Ice

Colored regions on Jupiter's satellite Europa and other icy bodies in the outer Solar System may be contaminated by organic macromolecular solid material that is produced when surface ices are exposed to electrical energy. Hypervelocity meteorite impacts and fracture release tidal and tectonic stresses in icy crusts in the form of electrical discharges, which provide the energy for in situ synthesis of the organic solids. We report measurements of electrical discharge, light emission, and magnetic phenomena in hypervelocity impacts into ice with projectiles with V approx. 5 km/s. Part of the projectile's kinetic energy is converted into electrical potential, while the mechanical disruption of the impact also releases stress energy as light, heat, electrical, and magnetic fields as secondary emissions. These newly recognized energy sources suggest that the dark material in the area of impact craters are tholins generated from the energy of the impacts and that well up from the fracture zone. Large pools of liquid water would persist under the meteorite crater for thousands of years, with the potential for prebiotic chemistry to take place at an accelerated rate due to energy pumped in from the secondary emissions.

Borucki, Jerome G.