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Downie, John D.

Publications and source records attributed to Downie, John D..

At least 19 records

Holographic Optical Data Storage

Although the basic idea may be traced back to the earlier X-ray diffraction studies of Sir W. L. Bragg, the holographic method as we know it was invented by D. Gabor in 1948 as a two-step lensless imaging technique to enhance the resolution of electron microscopy, for which he received the 1971 Nobel Prize in physics. The distinctive feature of holography is the recording of the object phase variations that carry the depth information, which is lost in conventional photography where only the intensity (= squared amplitude) distribution of an object is captured. Since all photosensitive media necessarily respond to the intensity incident upon them, an ingenious way had to be found to convert object phase into intensity variations, and Gabor achieved this by introducing a coherent reference wave along with the object wave during exposure. Gabor's in-line recording scheme, however, required the object in question to be largely transmissive, and could provide only marginal image quality due to unwanted terms simultaneously reconstructed along with the desired wavefront. Further handicapped by the lack of a strong coherent light source, optical holography thus seemed fated to remain just another scientific curiosity, until the field was revolutionized in the early 1960s by some major breakthroughs: the proposition and demonstration of the laser principle, the introduction of off-axis holography, and the invention of volume holography. Consequently, the remainder of that decade saw an exponential growth in research on theory, practice, and applications of holography. Today, holography not only boasts a wide variety of scientific and technical applications (e.g., holographic interferometry for strain, vibration, and flow analysis, microscopy and high-resolution imagery, imaging through distorting media, optical interconnects, holographic optical elements, optical neural networks, three-dimensional displays, data storage, etc.), but has become a prominent am advertising, and security medium as well. The evolution of holographic optical memories has followed a path not altogether different from holography itself, with several cycles of alternating interest over the past four decades. P. J. van Heerden is widely credited for being the first to elucidate the principles behind holographic data storage in a 1963 paper, predicting bit storage densities on the order of 1/lambda(sup 3) with source wavelength lambda - a fantastic capacity of nearly 1 TB/cu cm for visible light! The science and engineering of such a storage paradigm was heavily pursued thereafter, resulting in many novel hologram multiplexing techniques for dense data storage, as well as important advances in holographic recording materials. Ultimately, however, the lack of such enabling technologies as compact laser sources and high performance optical data I/O devices dampened the hopes for the development of a commercial product. After a period of relative dormancy, successful applications of holography in other arenas sparked a renewed interest in holographic data storage in the late 1980s and the early 1990s. Currently, with most of the critical optoelectronic device technologies in place and the quest for an ideal holographic recording medium intensified, holography is once again considered as one of several future data storage paradigms that may answer our constantly growing need for higher-capacity and faster-access memories.

Timucin, Dogan A.

Steady-State Characterization of Bacteriorhodopsin-D85N Photocycle

An operational characterization of the photocycle of the genetic mutant D85N of bacteriorhodopsin, BR-D85N, is presented. Steady-state bleach spectra and pump-probe absorbance data are obtained with thick hydrated films containing BR-D85N embedded in a gelatin host. Simple two- and three-state models are used to analyze the photocycle dynamics and extract relevant information such as pure-state absorption spectra, photochemical-transition quantum efficiencies, and thermal lifetimes of dominant states appearing in the photocycle, the knowledge of which should aid in the analysis of optical recording and retrieval of data in films incorporating this photochromic material. The remarkable characteristics of this material and their implications from the viewpoint of optical data storage and processing are discussed.

Timucin, Dogan A.

Long Holographic Lifetimes in Bacteriorhodopsin Films

The D85N genetic variant of bacteriorhodopsin displays a nearly permanent lifetime of the photochromic P490 state. We present pump-probe measurements that demonstrate this behavior. However, experimental diffraction efficiency measurements made from holograms recorded in a hydrated D85N film show markedly different decay behavior, suggesting a molecular diffusion process occurring in the film. Holograms recorded with different grating frequencies display correspondingly different decay times which support this hypothesis. A thin D85N film was then fabricated which was chemically crosslinked, resulting in the elimination of diffusion of BR molecules within the polymer matrix. This film exhibits a grating lifetime on the order of weeks or more, thus allowing the long term holographic storage of information in a BR film.

Downie, John D.

Determining the Absorbance Spectra of Photochromic Materials From Measured Spectrophotometer Data

If a two-state photochromic material is optically bleached, the absorbance spectrum data measured by a spectrophotometer is in general comprised of components from both the ground state and the upper state. Under general conditions, it may be difficult to extract the actual upper state spectrum from the spectrum of the bleached material. A simple algorithm is presented here for the recovery of the pure absorbance spectra of the upper state of a material such as bacteriorhodopsin, given single wavelength bleaching illumination, steady-state conditions, and accurate knowledge of phototransition rates and thermal decay rates.

Downie, John D.

Bacteriorhodopsin Material and Film Fabrication Issues for Holographic Applications

We discuss issues associated with bacteriorhodopsin (BR) materials and films that affect optical performance in holographic applications. For the D85N variant, some critical parameters include degree of hydration and recording wavelength. The quantum efficiency of the molecular state transition is observed to be apparently dependent on the illumination wavelength. We explain this effect by modeling the photo-activity of the D85N variant as two competing photocycles between the 9-cis and 13-cis retinal configurations. We are able to determine the pure excited P-state absorbance spectrum from the ground state spectrum and mixed population spectra obtained by bleaching to steady-state conditions.

Downie, John D.

Systems Issues Pertaining to Holographic Optical Data Storage in Thick Bacteriorhodopsin Films

The optical data storage capacity and raw bit-error-rate achievable with thick photochromic bacteriorhodopsin (BR) films are investigated for sequential recording and read- out of angularly- and shift-multiplexed digital holograms inside a thick blue-membrane D85N BR film. We address the determination of an exposure schedule that produces equal diffraction efficiencies among each of the multiplexed holograms. This exposure schedule is determined by numerical simulations of the holographic recording process within the BR material, and maximizes the total grating strength. We also experimentally measure the shift selectivity and compare the results to theoretical predictions. Finally, we evaluate the bit-error-rate of a single hologram, and of multiple holograms stored within the film.

Downie, John D.

Application of Bacteriorhodopsin Films in an Adaptive-Focusing Schlieren System

The photochromic property of bacteriorhodopsin films is exploited in the application of a focusing schlieren optical system for the visualization of optical phase information. By encoding an image on the film with light of one wavelength and reading out with a different wavelength, the readout beam can effectively see the photographic negative of the original image. The potential advantage of this system over previous focusing schlieren systems is that the updatable nature of the bacteriorhodopsin film allows system adaptation. I discuss two image encoding and readout techniques for the bacteriorhodopsin and use film transmission characteristics to choose the more appropriate method. I demonstrate the system principle with experimental results using argon-ion and He-Cd lasers as the two light sources of different wavelengths, and I discuss current limitations to implementation with a white-light source.

Downie, John D.

Optical Correlation of Images With Signal-Dependent Noise Using Constrained-Modulation Filter Devices

Images with signal-dependent noise present challenges beyond those of images with additive white or colored signal-independent noise in terms of designing the optimal 4-f correlation filter that maximizes correlation-peak signal-to-noise ratio, or combinations of correlation-peak metrics. Determining the proper design becomes more difficult when the filter is to be implemented on a constrained-modulation spatial light modulator device. The design issues involved for updatable optical filters for images with signal-dependent film-grain noise and speckle noise are examined. It is shown that although design of the optimal linear filter in the Fourier domain is impossible for images with signal-dependent noise, proper nonlinear preprocessing of the images allows the application of previously developed design rules for optimal filters to be implemented on constrained-modulation devices. Thus the nonlinear preprocessing becomes necessary for correlation in optical systems with current spatial light modulator technology. These results are illustrated with computer simulations of images with signal-dependent noise correlated with binary-phase-only filters and ternary-phase-amplitude filters.

Downie, John D.

Optical Logarithmic Transformation of Speckle Images with Bacteriorhodopsin Films

The application of logarithmic transformations to speckle images is sometimes desirable in converting the speckle noise distribution into an additive, constant-variance noise distribution. The optical transmission properties of some bacteriorhodopsin films are well suited to implement such a transformation optically in a parallel fashion. I present experimental results of the optical conversion of a speckle image into a transformed image with signal-independent noise statistics, using the real-time photochromic properties of bacteriorhodopsin. The original and transformed noise statistics are confirmed by histogram analysis.

Downie, John D.

Application of Bacteriorhodopsin Films in an Adaptive-Focusing Schlieren System

The photochromic property of bacteriorhodopsin films is exploited in the application of a focusing schlieren optical system for the visualization of optical phase information. By encoding an image on the film with light of one wavelength and reading out with a different wavelength, the readout beam can effectively see the photographic negative of the original image. The potential advantage of this system over previous focusing schlieren systems is that the updatable nature of the bacteriorhodopsin film allows system adaptation. I discuss two image encoding and readout techniques for the bacteriorhodopsin and use film transmission characteristics to choose the more appropriate method. I demonstrate the system principle with experimental results using argon-ion and He-Cd lasers as the two light sources of different wavelengths, and I discuss current limitations to implementation with a white-light source.

Downie, John D.

Nonlinear Coherent Optical Image Processing Using Logarithmic Transmittance of Bacteriorhodopsin Films

The transmission properties of some bacteriorhodopsin-film spatial light modulators are uniquely suited to allow nonlinear optical image-processing operations to be applied to images with multiplicative noise characteristics. A logarithmic amplitude-transmission characteristic of the film permits the conversion of multiplicative noise to additive noise, which may then be linearly filtered out in the Fourier plane of the transformed image. I present experimental results demonstrating the principle and the capability for several different image and noise situations, including deterministic noise and speckle. The bacteriorhodopsin film studied here displays the logarithmic transmission response for write intensities spanning a dynamic range greater than 2 orders of magnitude.

Downie, John D.

Measurements of Holographic Properties of Bacteriorhodopsin Films

Several different bacteriorhodopsin (BR) films are characterized with respect to general holographic properties. Experimental measurements include diffraction efficiency and sensitivity as functions of writing intensity and grating frequency, hologram thermal decay behavior, diffraction efficiency as a function of grating tilt within the film and modulation depth, and estimates of the refractive index change from the diffraction efficiency data. The films studied include those made from wildtype BR and the genetic variants D96N and D96N/T46V. The maximum diffraction efficiency measured was just over 3% for a hydrated wildtype BR film. The films' holographic properties were found to be relatively insensitive to grating frequency and grating tilt angle. The diffraction efficiency dropped off more sharply as a function of modulation depth than a purely linear medium, and only the hydrated wildtype film exhibited significant behavior variation with different writing intensities.

Downie, John D.

Real-Time Holographic Image Correction Using Bacteriorhodopsin

We present experimental results of one-way coherent imaging through a thin phase-aberrating medium using a holographic technique with bacteriorhodopsin as a real-time holographic material. Bacteriorhodopsin is well suited for the application when the aberration is time varying because of its real-time writing and erasing characteristics, sensitivity, and spatial resolution. We show results with final image resolution of greater than 20 line pairs/mm and high signal-to-noise ratio using a polarization-holography approach.

Downie, John D.

Design of Ternary Correlation Filters to Reduce Probability of Error

The problem of designing ternary phase and amplitude filters (TPAF's) that reduce the probability of image misclassification for a two-class image set is studied. The Fisher ratio is used as a measure of the correct classification rate, and an attempt is made to maximize this quantity in the filter designs. Given the nonanalytical nature of the design problem, a simulated annealing optimization technique is employed. Computer simulation results are presented for several cases including single in-class and out-of-class image sets and multiple image sets corresponding to the design of synthetic discriminant function filters. Significant improvements are found in expected rates of correct classification in comparison to binary phase-only filters and other TPAF designs. Approaches to accelerate the filter design process are also discussed.

Downie, John D.

Optimal Correlation Filters for Images with Signal-Dependent Noise

We address the design of optimal correlation filters for pattern detection and recognition in the presence of signal-dependent image noise sources. The particular examples considered are film-grain noise and speckle. Two basic approaches are investigated: (1) deriving the optimal matched filters for the signal-dependent noise models and comparing their performances with those derived for traditional signal-independent noise models and (2) first nonlinearly transforming the signal-dependent noise to signal-independent noise followed by the use of a classical filter matched to the transformed signal. We present both theoretical and computer simulation results that demonstrate the generally superior performance of the second approach in terms of the correlation peak signal-to-noise ratio.

Downie, John D.

Nonlinear Optical Image Processing with Bacteriorhodopsin Films

The transmission properties of some bacteriorhodopsin film spatial light modulators are uniquely suited to allow nonlinear optical image processing operations to be applied to images with multiplicative noise characteristics. A logarithmic amplitude transmission feature of the film permits the conversion of multiplicative noise to additive noise, which may then be linearly filtered out in the Fourier plane of the transformed image. The bacteriorhodopsin film displays the logarithmic amplitude response for write beam intensities spanning a dynamic range greater than 2.0 orders of magnitude. We present experimental results demonstrating the principle and capability for several different image and noise situations, including deterministic noise and speckle. Using the bacteriorhodopsin film, we successfully filter out image noise from the transformed image that cannot be removed from the original image.

Downie, John D.

Optical Processing of Speckle Images with Bacteriorhodopsin for Pattern Recognition

Logarithmic processing of images with multiplicative noise characteristics can be utilized to transform the image into one with an additive noise distribution. This simplifies subsequent image processing steps for applications such as image restoration or correlation for pattern recognition. One particularly common form of multiplicative noise is speckle, for which the logarithmic operation not only produces additive noise, but also makes it of constant variance (signal-independent). We examine the optical transmission properties of some bacteriorhodopsin films here and find them well suited to implement such a pointwise logarithmic transformation optically in a parallel fashion. We present experimental results of the optical conversion of speckle images into transformed images with additive, signal-independent noise statistics using the real-time photochromic properties of bacteriorhodopsin. We provide an example of improved correlation performance in terms of correlation peak signal-to-noise for such a transformed speckle image.

Downie, John D.