Bacterial Composition and Quantitation in the Yungay Region of the Atacama Desert, Chile
Voyager would have produced similar negative results if tested in the Yungay region (Navarro-Gonzales et al, 2003). However, the number of bacteria present per gr'am in the Yungay sands is not well-established, being below the detection limit of culture methods. For the past several years, this group has been analyzing Yungay sands by quantitative Polymerase Chain Reaction (qPCR), both in the lab and in the field, to establish protocols for counting bacteria. We use primers that detect a broad range of bacterial taxa, including both proteobacteria and firmicutes. Optimization of DNA extraction and qPCR analysis is critical for accurate counts. Comparison of qPCR results with PhosphoLipid Fatty Acid (PLFA)-analysis and other counting methods indicates that there are detectable bacteria in sand obtained from the upper few centimeters of the desert surface.