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Garrett, Timothy J.

Publications and source records attributed to Garrett, Timothy J..

The lipidomics reporting checklist a framework for transparency of lipidomic experiments and repurposing resource data

The rapid increase in lipidomic studies has led to a collaborative effort within the community to establish standards and criteria for producing, documenting, and disseminating data. Creating a dynamic checklist that condenses key information about lipidomic experiments into common terminology will enhance the field's consistency, comparability, and repeatability. Here, we describe the structure and rationale of the established Lipidomics Minimal Reporting Checklist to increase transparency in lipidomics research.

59 BASIC BIOLOGICAL SCIENCES↗

Measurement and Analysis of the Microphysical Properties of Arctic Precipitation Showing Frequent Occurrence of Riming

Detailed ground-based observations of snow are scarce in remote regions, such as the Arctic. Here, Multi-Angle Snowflake Camera measurements of over 55,000 solid hydrometeors—obtained during a two-year period from August 2016 to August 2018 at Oliktok Point, Alaska—are analyzed and compared to similar measurements from an earlier experiment at Alta, Utah. In general, distributions of hydrometeor fall speed, fall orientation, aspect ratio, flatness, and complexity (i.e., riming degree) were observed to be very similar between the two locations, except that Arctic hydrometeors tended to be smaller. In total, the slope parameter defining a negative exponential of the size distribution was approximately 50% steeper in the Arctic as at Alta. Sixty-six percent of particles were observed to be rimed or moderately rimed with some suggestion that riming is favored by weak boundary layer stability. On average, the fall speed of rimed particles was not notably different from aggregates. However, graupel density and fall speed increase as cloud temperatures approach the melting point.

54 ENVIRONMENTAL SCIENCES↗

Fabrication of Polymer Membrane-Suspended Microstructures on Printed Circuit Boards

When microelectromechanical systems are manufactured in high densities, the necessary routing layer structures can become complex and thus expensive if executed in silicon technology. If, additionally, the microstructures are also to be fabricated suspended on membranes, complex thinning processes become necessary to form these often rather fragile membranes. Here, a novel fabrication concept is demonstrated that allows for the fabrication of membrane-suspended microstructures using standard microfabrication techniques directly integrated with printed circuit boards (PCB) by laminating polyimide (PI) films over cavities in the PCB. This results in cost-effective routing layer fabrication and direct compatibility with common electronic component standards such as SMT (surface-mount technology) and THT (through-hole technology). To illustrate the capabilities of the fabrication process, we fabricated an array of membrane suspended microheaters. Individual platinum microheater elements are suspended on PI membranes that are 25 μm thick and 500 μm in diameter. The fabricated PCB carries a 10x10 array of suspended microheaters on an area of 26,mm x 26,mm. Here, the characterization of the microheater array shows that a yield of 86% functional microheaters was achieved. An individual microheater shows an almost linear heating characteristic at least up to 200°C demonstrating the viability of the technique for creating functional membrane-suspended microstructures on a PCB. [2021-0226]

47 OTHER INSTRUMENTATION↗

Graupel Precipitating From Thin Arctic Clouds With Liquid Water Paths Less Than 50 g m -2

Rimed precipitation growth can efficiently remove moisture and aerosols from the boundary layer, yet thin low-level Arctic mixed-phase clouds are generally thought to precipitate pristine and aggregated ice crystals. Here we present automated surface photographic measurements showing that only 34% of precipitation particles exhibit negligible riming and that graupel particles ≥ in diameter commonly fall from clouds with liquid water paths less than 50 g m -2 . Analyses indicate that significant riming enhancement can occur provided sustained updrafts of 0.4 m s -1 , consistent with those measured in Arctic clouds. A Lagrangian numerical simulation that tracks falling particles suggests that similar updraft speeds can account for about one half of the observed riming enhancement. Riming enhancement appears particularly likely when weak temperature inversions are observed at cloud top, but a full explanation remains to be determined.

54 ENVIRONMENTAL SCIENCES↗

Idealized simulation study of the relationship of disdrometer sampling statistics with the precision of precipitation rate measurement

Due to the discretized nature of rain, the measurement of a continuous precipitation rate by disdrometers is subject to statistical sampling errors. Here, Monte Carlo simulations are employed to obtain the precision of rain detection and rate as a function of disdrometer collection area and compared with World Meteorological Organization guidelines for a 1 min sample interval and 95 % probability. To meet these requirements, simulations suggest that measurements of light rain with rain rates R ≤ 0.50 mm h-1 require a collection area of at least 6 cm × 6 cm, and for R = 1 mm h -1 , the minimum collection area is 13 cm × 13 cm. For R = 0.01 mm h -1 , a collection area of 2 cm × 2 cm is sufficient to detect a single drop. Simulations are compared with field measurements using a new hotplate device, the Differential Emissivity Imaging Disdrometer. The field results suggest an even larger plate may be required to meet the stated accuracy, likely in part due to non-Poissonian hydrometeor clustering.

54 ENVIRONMENTAL SCIENCES↗

Targeted metabolomic analysis identifies increased serum levels of GABA and branched chain amino acids in canine diabetes

Introduction Dogs with naturally occurring diabetes mellitus represent a potential model for human type 1 diabetes, yet signifcant knowledge voids exist in terms of the pathogenic mechanisms underlying the canine disorder. Untargeted metabolomic studies from a limited number of diabetic dogs identifed similarities to humans with the disease. Objective To expand and validate earlier metabolomic studies, identify metabolites that difer consistently between diabetic and healthy dogs, and address whether certain metabolites might serve as disease biomarkers. Methods Untargeted metabolomic analysis via liquid chromatography-mass spectrometry was performed on serum from diabetic (n=15) and control (n=15) dogs. Results were combined with those of our previously published studies using identical methods (12 diabetic and 12 control dogs) to identify metabolites consistently diferent between the groups in all 54 dogs. Thirty-two candidate biomarkers were quantifed using targeted metabolomics. Biomarker concentrations were compared between the groups using multiple linear regression (corrected P<0.0051 considered signifcant). Results Untargeted metabolomics identifed multiple persistent diferences in serum metabolites in diabetic dogs compared with previous studies. Therefore, targeted metabolomics showed increases in gamma amino butyric acid, valine, leucine, isoleucine, citramalate, and 2-hydroxyisobutyric acid in diabetic versus control dogs while indoxyl sulfate, N-acetyl-L-aspartic acid, kynurenine, anthranilic acid, tyrosine, glutamine, and tauroursodeoxycholic acid were decreased. Conclusion Several of these fndings parallel metabolomic studies in both human diabetes and other animal models of this disease. Given recent studies on the role of GABA and branched chain amino acids in human diabetes, the increase in serum concentrations in canine diabetes warrants further study of these metabolites as potential biomarkers, and to identify similarity in mechanisms underlying this disease in humans and dogs.

59 BASIC BIOLOGICAL SCIENCES↗

Mass and density of individual frozen hydrometeors

A new precipitation sensor, the Differential Emissivity Imaging Disdrometer (DEID), is used to provide the first continuous measurements of the mass, diameter, and density of individual hydrometeors. The DEID consists of an infrared camera pointed at a heated aluminum plate. It exploits the contrasting thermal emissivity of water and metal to determine individual particle mass by assuming that energy is conserved during the transfer of heat from the plate to the particle during evaporation. Particle density is determined from a combination of particle mass and morphology. A Multi-Angle Snowflake Camera (MASC) was deployed alongside the DEID to provide refined imagery of particle size and shape. Broad consistency is found between derived mass–diameter and density–diameter relationships and those obtained in prior studies. However, DEID measurements show a generally weaker dependence with size for hydrometeor density and a stronger dependence for aggregate snowflake mass.

47 OTHER INSTRUMENTATION↗

Arctic observations and numerical simulations of surface wind effects on Multi-Angle Snowflake Camera measurements

Abstract. Ground-based measurements of frozen precipitation are heavily influenced by interactions of surface winds with gauge-shield geometry. The Multi-Angle Snowflake Camera (MASC), which photographs hydrometeors in free-fall from three different angles while simultaneously measuring their fall speed, has been used in the field at multiple midlatitude and polar locations both with and without wind shielding. Here, we present an analysis of Arctic field observations – with and without a Belfort double Alter shield – and compare the results to computational fluid dynamics (CFD) simulations of the airflow and corresponding particle trajectories around the unshielded MASC. MASC-measured fall speeds compare well with Ka-band Atmospheric Radiation Measurement (ARM) Zenith Radar (KAZR) mean Doppler velocities only when winds are light (≤5ms-1) and the MASC is shielded. MASC-measured fall speeds that do not match KAZR-measured velocities tend to fall below a threshold value that increases approximately linearly with wind speed but is generally <0.5ms-1. For those events with wind speeds ≤1.5ms-1, hydrometeors fall with an orientation angle mode of 12∘ from the horizontal plane, and large, low-density aggregates are as much as 5 times more likely to be observed. Simulations in the absence of a wind shield show a separation of flow at the upstream side of the instrument, with an upward velocity component just above the aperture, which decreases the mean particle fall speed by 55 % (74 %) for a wind speed of 5 m s−1 (10 m s−1). We conclude that accurate MASC observations of the microphysical, orientation, and fall speed characteristics of snow particles require shielding by a double wind fence and restriction of analysis to events where winds are light (≤5ms-1). Hydrometeors do not generally fall in still air, so adjustments to these properties' distributions within natural turbulence remain to be determined.

54 ENVIRONMENTAL SCIENCES↗

Parameterization of arctic hydrometeor physics using new precipitation measurement technologies: Final Report

Predictions of precipitation are highly sensitive to the accuracy of parameterized growth and sedimentation processes, especially in remote regions such as the Arctic where observations are scarce. The goal of this study was to combine measurements of meteorological conditions and retrievals from passive and active remote sensors to provide refined parameterizations of precipitation properties and processes with a particular focus on the Arctic. To accomplish the project goals, new instrumentation was used from the Oliktok Point Mobile Facility and the Utqiagvik (Barrow) North Slope of Alaska ARM site focusing in particular on Multi-Angle Snowflake Camera (MASC) data. The MASC is the first device able to automatically photograph precipitation particles in free-fall from multiple angles while simultaneously measuring their fall speed. The MASC installed at the ARM Oliktok Point and Utqiagvik facilities was used to examine the nature of Arctic precipitation, taking particular advantage of the unique suite of precipitation, meteorological, and remote sensing instrumentation that is available at the high latitude sites. Combined with radiometer data we were able to explore the relationship between precipitation particle characteristics and the clouds where the snow is created. Ground-based wind measurements provided detailed data on turbulence. Further theoretical work explored the physical mechanisms controlling precipitation size distributions, the physics determining hydrometeor fallspeed, and the existence of general solutions to the Navier-Stokes equations for falling particles. Outreach work introduced hydrometeor classification to classrooms across the United States.

47 OTHER INSTRUMENTATION↗

Convective Formation of Pileus Cloud Near the Tropopause

Pileus clouds form where humid, stably stratified air is mechanically displaced vertically ahead of rising convection. This paper describes convective formation of pileus cloud in the tropopause transition layer (TTL), and explores a possible link to the formation of long-lasting cirrus at cold temperatures. In-situ measurements from off the coast of Honduras during the July 2002 CRYSTALFACE experiment show an example of TTL cirrus associated with, and penetrated by, deep convection. The cirrus was enriched with total water compared to its surroundings, but composed of extremely small ice crystals with effective radii between 2 and 4 m. Through gravity wave analysis, and intercomparison of measured and simulated cloud microphysics, it is argued that the TTL cirrus in this case originated neither from convectively-forced gravity wave motions nor environmental mixing alone. Rather, it is hypothesized that some combination was involved in which, first, convection forced pileus cloud to form from TTL air; second, it punctured the pileus layer, contributing larger ice crystals through interfacial mixing; third, the addition of condensate inhibited evaporation of the original pileus ice crystals in the warm phase of the ensuing gravity wave; fourth, through successive pulses, deep convection formed the observed layer of TTL cirrus. While the general incidence and longevity of pileus cloud remains unknown, in-situ measurements, and satellite-based Microwave Limb Sounder retrievals, suggest that much of the tropical TTL is sufficiently humid to be susceptible to its formation. Where these clouds form and persist, there is potential for an irreversible repartition from water vapor to ice at cold temperatures.

Garrett, Timothy J.↗