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Jain, Neeraj

Publications and source records attributed to Jain, Neeraj.

Interaction between human BAP31 and respiratory syncytial virus small hydrophobic (SH) protein

The small hydrophobic (SH) protein is a short channel-forming polypeptide encoded by the human respiratory syncytial virus (hRSV). Deletion of SH protein leads to the viral attenuation in mice and primates, and delayed apoptosis in infected cells. We have used a membrane-based yeast two-hybrid system (MbY2H) and a library from human lung cDNA to detect proteins that bind SH protein. This led to the identification of a membrane protein, B-cell associated protein 31 (BAP31). Transfected SH protein co-localizes with transfected BAP31 in cells, and pulls down endogenous BAP31. Titration of purified C-terminal endodomain of BAP31 against isotopically labeled SH protein in detergent micelles suggests direct interaction between the two proteins. Given the key role of BAP31 in protein trafficking and its critical involvement in pro- and anti-apoptotic pathways, this novel interaction may constitute a potential drug target. - Highlights: • A yeast two-hybrid system (MbY2H) detected BAP31 as a binder of RSV SH protein. • Transfected SH and BAP31 co-localize in lung epithelial cells. • Endogenous BAP31 is pulled down by RSV SH protein. • BAP31 endodomain interacts with the N-terminal α-helix of SH protein in micelles. • This interaction is proposed to be a potential drug target.

60 APPLIED LIFE SCIENCES↗

Plasma wakefield acceleration studies using the quasi-static code WAKE

The quasi-static code WAKE [P. Mora and T. Antonsen, Phys. Plasmas 4, 217 (1997)] is upgraded to model the propagation of an ultra-relativistic charged particle beam through a warm background plasma in plasma wakefield acceleration. The upgraded code is benchmarked against the full particle-in-cell code OSIRIS [Hemker et al., Phys. Rev. Spec. Top. Accel. Beams 3, 061301 (2000)] and the quasi-static code QuickPIC [Huang et al., J. Comput. Phys. 217, 658 (2006)]. The effect of non-zero plasma temperature on the peak accelerating electric field is studied for a two bunch electron beam driver with parameters corresponding to the plasma wakefield acceleration experiments at Facilities for Accelerator Science and Experimental Test Beams. It is shown that plasma temperature does not affect the energy gain and spread of the accelerated particles despite suppressing the peak accelerating electric field. The role of plasma temperature in improving the numerical convergence of the electric field with the grid resolution is discussed.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗