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Liu, P.

Publications and source records attributed to Liu, P..

27 records · Page 2
All sourcesNASA NTRSDOE OSTI
DOE OSTI2020

Survey of Early-Diverging Lineages of Fungi Reveals Abundant and Diverse Mycoviruses

ABSTRACT Mycoviruses are widespread and purportedly common throughout the fungal kingdom, although most are known from hosts in the two most recently diverged phyla, Ascomycota and Basidiomycota, together called Dikarya. To augment our knowledge of mycovirus prevalence and diversity in underexplored fungi, we conducted a large-scale survey of fungi in the earlier-diverging lineages, using both culture-based and transcriptome-mining approaches to search for RNA viruses. In total, 21.6% of 333 isolates were positive for RNA mycoviruses. This is a greater proportion than expected based on previous taxonomically broad mycovirus surveys and is suggestive of a strong phylogenetic component to mycoviral infection. Our newly found viral sequences are diverse, composed of double-stranded RNA, positive-sense single-stranded RNA (ssRNA), and negative-sense ssRNA genomes and include novel lineages lacking representation in the public databases. These identified viruses could be classified into 2 orders, 5 families, and 5 genera; however, half of the viruses remain taxonomically unassigned. Further, we identified a lineage of virus-like sequences in the genomes of members of Phycomycetaceae and Mortierellales that appear to be novel genes derived from integration of a viral RNA-dependent RNA polymerase gene. The two screening methods largely agreed in their detection of viruses; thus, we suggest that the culture-based assay is a cost-effective means to quickly assess whether a laboratory culture is virally infected. This study used culture collections and publicly available transcriptomes to demonstrate that mycoviruses are abundant in laboratory cultures of early-diverging fungal lineages. The function and diversity of mycoviruses found here will help guide future studies into mycovirus origins and ecological functions. IMPORTANCE Viruses are key drivers of evolution and ecosystem function and are increasingly recognized as symbionts of fungi. Fungi in early-diverging lineages are widespread, ecologically important, and comprise the majority of the phylogenetic diversity of the kingdom. Viruses infecting early-diverging lineages of fungi have been almost entirely unstudied. In this study, we screened fungi for viruses by two alternative approaches: a classic culture-based method and by transcriptome-mining. The results of our large-scale survey demonstrate that early-diverging lineages have higher infection rates than have been previously reported in other fungal taxa and that laboratory strains worldwide are host to infections, the implications of which are unknown. The function and diversity of mycoviruses found in these basal fungal lineages will help guide future studies into mycovirus origins and their evolutionary ramifications and ecological impacts.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2020

Study of CMOS strip sensor for future silicon tracker

Monolithic silicon sensors developed with High-Voltage CMOS (HV-CMOS) processes have become highly attractive for charged particle tracking. Compared with the standard CMOS sensors, HV-CMOS sensors can provide larger and deeper depletion regions that lead to larger signals and faster charge collection. They can provide high position resolution, low material budget, high radiation hardness and low cost that are desirable for high performance tracking in harsh collision environment. Various studies have been conducted to explore the technology feasibility for the large-area tracking systems at future collider experiments. CHESS (CMOS HV/HR Evaluation for Strip Sensor) sensor series have been developed as an alternative solution to the conventional silicon micro-strip detectors for the ATLAS inner tracker upgrade. The first prototype (named CHESS1) was to evaluate the diode geometry and the in-pixel analog electronics. Obtained test results were used to optimize the second prototype (named CHESS2). CHESS2 was implemented with a full digital readout architecture and realized as a full reticle sized monolithic sensor. Here, the basic characteristics of the CHESS2 prototype sensors and their performance in response to different input signals are presented.

46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗
DOE OSTI2020

Measurements of Single Event Upset in ATLAS IBL

Effects of Single Event Upsets (SEU) and Single Event Transients (SET) are studied in the FE-I4B chip of the innermost layer of the ATLAS pixel system. SEU/SET affect the FE-I4B Global Registers as well as the settings for the individual pixels, causing, among other things, occupancy losses, drops in the low voltage currents, noisy pixels, and silent pixels. Quantitative data analysis and simulations indicate that SET dominate over SEU on the load line of the memory. Operational issues and mitigation techniques are presented.

47 OTHER INSTRUMENTATION↗
NASA NTRS2013

Potential Impact of Land Use Change on Future Regional Climate in the Southeastern U.S.: Reforestation and Crop Land Conversion

The impact of future land use and land cover changes (LULCC) on regional and global climate is one of the most challenging aspects of understanding anthropogenic climate change. We study the impacts of LULCC on regional climate in the southeastern U.S. by downscaling the NASA Goddard Institute for Space Studies global climate model E to the regional scale using a spectral nudging technique with the Weather Research and Forecasting Model. Climate-relevant meteorological fields are compared for two southeastern U.S. LULCC scenarios to the current land use/cover for four seasons of the year 2050. In this work it is shown that reforestation of cropland in the southeastern U.S. tends to warm surface air by up to 0.5 K, while replacing forested land with cropland tends to cool the surface air by 0.5 K. Processes leading to this response are investigated and sensitivity analyses conducted. The sensitivity analysis shows that results are most sensitive to changes in albedo and the stomatal resistance. Evaporative cooling of croplands also plays an important role in regional climate. Implications of LULCC on air quality are discussed. Summertime warming associated with reforestation of croplands could increase the production of some secondary pollutants, while a higher boundary layer will decrease pollutant concentrations; wintertime warming may decrease emissions from biomass burning from wood stoves

Regional climate change↗
NASA NTRS2013

Downscaling a Global Climate Model to Simulate Climate Change Impacts on U.S. Regional and Urban Air Quality

Climate change can exacerbate future regional air pollution events by making conditions more favorable to form high levels of ozone. In this study, we use spectral nudging with WRF to downscale NASA earth system GISS modelE2 results during the years 2006 to 2010 and 2048 to 2052 over the continental United States in order to compare the resulting meteorological fields from the air quality perspective during the four seasons of five-year historic and future climatological periods. GISS results are used as initial and boundary conditions by the WRF RCM to produce hourly meteorological fields. The downscaling technique and choice of physics parameterizations used are evaluated by comparing them with in situ observations. This study investigates changes of similar regional climate conditions down to a 12km by 12km resolution, as well as the effect of evolving climate conditions on the air quality at major U.S. cities. The high resolution simulations produce somewhat different results than the coarse resolution simulations in some regions. Also, through the analysis of the meteorological variables that most strongly influence air quality, we find consistent changes in regional climate that would enhance ozone levels in four regions of the U.S. during fall (Western U.S., Texas, Northeastern, and Southeastern U.S), one region during summer (Texas), and one region where changes potentially would lead to better air quality during spring (Northeast). We also find that daily peak temperatures tend to increase in most major cities in the U.S. which would increase the risk of health problems associated with heat stress. Future work will address a more comprehensive assessment of emissions and chemistry involved in the formation and removal of air pollutants.

meteorological parameters↗
NASA NTRS1999

160-190 GHz Monolithic Low Noise Amplifiers

This paper presents the results of two 160-190 GHz monolithic low noise amplifiers (LNAs) fabricated with 0.07 meu pseudomorphic (PM) InAIAs/InGaAs/InP HEMT technology using a reactive ion etch (RIE) via hole process.

low↗
NASA NTRS1977

Superbroadening in H2O and D2O by self-focused picosecond pulses from a YAlG:Nd laser

The dielectric-breakdown intensity threshold, the critical power for self-focusing, and the power threshold for the production of spectral superbroadening have been measured in H2O and D2O. For bandwidth-limited pulses of 30 psec duration at 1.06 microns and of 21 psec duration at 0.53 micron, the superbroadening in water always required power levels sufficient for catastrophic self-focusing and intensities equal to the electric breakdown threshold.

Smith, W. L.↗