Lu, Yuping | Search NASA

DOE OSTI2020

Biclique: an R package for maximal biclique enumeration in bipartite graphs

Bipartite graphs are widely used to model relationships between pairs of heterogeneous data types. Maximal bicliques are foundational structures in such graphs, and their enumeration is an important task in systems biology, epidemiology and many other problem domains. Thus, there is a need for an efficient, general purpose, publicly available tool to enumerate maximal bicliques in bipartite graphs. The statistical programming language R is a logical choice for such a tool, but until now no R package has existed for this purpose. Our objective is to provide such a package, so that the research community can more easily perform this computationally demanding task. Biclique is an R package that takes as input a bipartite graph and produces a listing of all maximal bicliques in this graph. Input and output formats are straightforward, with examples provided both in this paper and in the package documentation. Biclique employs a state-of-the-art algorithm previously developed for basic research in functional genomics.

97 MATHEMATICS AND COMPUTING↗

DOE OSTI2019

Convolutional Neural Networks for Hydrometeor Classification using Dual Polarization Doppler Radars

Traditional fuzzy logic hydrometeor classification algorithm is a common way to classify precipitation type from dual polarization doppler radar. We propose a deep learning-based method to estimate hydrometeors efficiently using observed radar variables such as horizontal reflectivity (Z H ), differential reflectivity (Z DR ), correlation coefficient (ρ HV ) and specific differential phase (K DP ) from National Weather Service NEXRAD collected at Vance AFB facility at the first elevation angle from January 1st, 2015 to July 31th, 2019. We stack matrices of values from these four polarimetric variables as one 3D array. Samples are preprocessed and divided into training, validation and test set with four target hydrometeor categories (Ice Crystals (IC), Dry Snow (DS), Light and/or Moderate Rain (RA) and Big Drops (rain) (BD)). We developed and optimized five Convolutional Neural Networks (CNNs) architectures and achieved an accuracy of 87.23% and 93.736% respectively using modified ResNet with two different input data selection strategies for hydrometeor classification. Training data selection strategies were important to ensure use of available samples in training for robust performance evaluated by applying the models to novel time period beyond what was use to train the model. Seasonal variation in atmospheric conditions lead to seasonal patterns of liquid vs solid forms of precipitation, that poses challenge for classifier and offer insights into domain specific approaches required for problem of hydrometeor identification. Computationally efficient and scalable approach for classification of hydrometeors offer opportunties to effectively use the large volumes of rich time series of radar observations that are becoming increasingly available.

Lu, Yuping↗