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Lugagne, Jean-Baptiste

Publications and source records attributed to Lugagne, Jean-Baptiste.

Microsecond fingerprint stimulated Raman spectroscopic imaging by ultrafast tuning and spatial-spectral learning

Label-free vibrational imaging by stimulated Raman scattering (SRS) provides unprecedented insight into real-time chemical distributions. Specifically, SRS in the fingerprint region (400–1800 cm -1 ) can resolve multiple chemicals in a complex bio-environment. However, due to the intrinsic weak Raman cross-sections and the lack of ultrafast spectral acquisition schemes with high spectral fidelity, SRS in the fingerprint region is not viable for studying living cells or large-scale tissue samples. Here, we report a fingerprint spectroscopic SRS platform that acquires a distortion-free SRS spectrum at 10 cm -1 spectral resolution within 20 µs using a polygon scanner. Meanwhile, we significantly improve the signal-to-noise ratio by employing a spatial-spectral residual learning network, reaching a level comparable to that with 100 times integration. Collectively, our system enables high-speed vibrational spectroscopic imaging of multiple biomolecules in samples ranging from a single live microbe to a tissue slice.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

Cell-machine interfaces for characterizing gene regulatory network dynamics

Gene regulatory networks and the dynamic responses theyproduce offer a wealth of information about how biologicalsystems process information about their environment.Recently, researchers interested in dissecting these networkshave been outsourcing various parts of their experimentalworkflow to computers. Here we review how, using microfluidicor optogenetic tools coupled with fluorescence imaging, it isnow possible to interface cells and computers. These platformsenable scientists to perform informative dynamic stimulationsof genetic pathways and monitor their reaction. It is alsopossible to close the loop and regulate genes in real time,providing an unprecedented view of how signals propagatethrough the network. Finally, we outline new tools that can beused within the framework of cell–machine interfaces.

59 BASIC BIOLOGICAL SCIENCES↗