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Mattmann, Chris

Publications and source records attributed to Mattmann, Chris.

Research Report: Progress on Building a File Observatory for Secure Parser Development

Parsing untrusted data is notoriously challenging.Failure to handle maliciously crafted data correctly can (anddoes) lead to a wide range of vulnerabilities. The Languagetheoretic security (LangSec) philosophy seeks to obviate the needfor developers to apply ad hoc solutions by, instead, offeringformally correct and verifiable input handling throughout thesoftware development lifecycle. One of the key components indeveloping secure parsers is a broad coverage corpus that enablesdevelopers to understand the problem space for a given formatand to use, potentially, as seeds for fuzzing and other automatedtesting. In this paper, we offer an update on work reportedat the LangSec 2021 conference on the development of a fileobservatory to gather and enable analysis on a diverse collectionof files at scale. The initial focus of the observatory is on PortableDocument Format (PDF) files and file formats typically embeddedin PDFs. In this paper, we report on refactoring the ingestprocess, applying new analytic methods, and improving the User Interface.

Stonebraker, Ryan

Research Report: Building a File Observatory for Secure Parser Development

"Parsing untrusted data is notoriously challenging.Failure to handle maliciously crafted data correctly can (anddoes) lead to a wide range of vulnerabilities. The Languagetheoretic security (LangSec) philosophy seeks to obviate the needfor developers to apply ad hoc solutions by, instead, offeringformally correct and verifiable input handling throughout thesoftware development lifecycle. One of the key components indeveloping secure parsers is a broad coverage corpus that enablesdevelopers to understand the problem space for a given formatand to use, potentially, as seeds for fuzzing and other automatedtesting. In this paper, we offer an update on the developmentof a file observatory to gather and enable analysis on a diversecollection of files at scale. Specifically, we report on the additionof a bug tracker corpus and new analytic methods on our existingcorpus."

Stonebraker, Ryan

TopiQAL: Topic-aware Question Answering using Scalable Domain-specific Supercomputers

We all have questions. About today's temperature, scores of our favorite baseball team, the Universe, and about vaccine for COVID-19. Life, physical, and natural scientists have been trying to find answers to various topics using scientific methods and experiments, while computer scientists have built language models as a tiny step towards automatically answering all of these questions across domains given a little bit of context. In this paper, we propose an architecture using state-of-the-art Natural Language Processing language models namely Topic Models and Bidirectional Encoder Representations from Transformers (BERT) that can transparently and automatically retrieve articles of relevance to questions across domains, and fetch answers to topical questions related to COVID-19 current and historical medical research literature. We demonstrate the benefits of using domain-specific supercomputers like Tensor Processing Units (TPUs), residing on cloud-based infrastructure, using which we could achieve significant gains in training and inference times, also with very minimal cost.

Penberthy, Scott

Research Report: Building a Wide Reach Corpus for Secure Parser Development

Whether developing from a specification or deriving parsers from samples, LangSec parser developers require widereach corpora of their target file format in order to identify key edge cases or common deviations from the format’s specification. In this work-in-progress paper, we report the details of several methods we’ve used to gather 30 million files, extract features and make these features amenable to search and other analytics. This paper documents opportunities and limitations of some popular open source data and tools and this paper will benefit researchers who need to efficiently gather a large file corpus.

Timmaraju, Virisha

The Earth System Grid Federation : an Open Infrastructure for Access to Distributed Geospatial Data

The Earth System Grid Federation (ESGF) is a multi-agency, international collaboration that aims at developing the software infrastructure needed to facilitate and empower the study of climate change on a global scale. The ESGF's architecture employs a system of geographically distributed peer nodes, which are independently administered yet united by the adoption of common federation protocols and application programming interfaces (APIs). The cornerstones of its interoperability are the peer-to-peer messaging that is continuously exchanged among all nodes in the federation; a shared architecture and API for search and discovery; and a security infrastructure based on industry standards (OpenID, SSL, GSI and SAML). The ESGF software is developed collaboratively across institutional boundaries and made available to the community as open source. It has now been adopted by multiple Earth science projects and allows access to petabytes of geophysical data, including the entire model output used for the next international assessment report on climate change (IPCC-AR5) and a suite of satellite observations (obs4MIPs) and reanalysis data sets (ANA4MIPs).

search,

Big Data Challenges for Large Radio Arrays

Future large radio astronomy arrays, particularly the Square Kilometre Array (SKA), will be able to generate data at rates far higher than can be analyzed or stored affordably with current practices. This is, by definition, a "big data" problem, and requires an end-to-end solution if future radio arrays are to reach their full scientific potential. Similar data processing, transport, storage, and management challenges face next-generation facilities in many other fields.

Combining

An Ontology Driven Information Architecture for Interoperable Disparate Data Sources

The mission of the Planetary Data System is to facilitate achievement of NASA's planetary science goals by efficiently collecting, archiving, and making accessible digital data produced by or relevant to NASA's planetary missions, research programs, and data analysis programs. The vision is: (1) To gather and preserve the data obtained from exploration of the Solar System by the U.S. and other nations (2) To facilitate new and exciting discoveries by providing access to and ensuring usability of those data to the worldwide community (3) To inspire the public through availability and distribution of the body of knowledge reflected in the PDS data collection PDS is a federation of heterogeneous nodes including science and support nodes

planetary data systems

Transformation of OODT CAS to Perform Larger Tasks

A computer program denoted OODT CAS has been transformed to enable performance of larger tasks that involve greatly increased data volumes and increasingly intensive processing of data on heterogeneous, geographically dispersed computers. Prior to the transformation, OODT CAS (also alternatively denoted, simply, 'CAS') [wherein 'OODT' signifies 'Object-Oriented Data Technology' and 'CAS' signifies 'Catalog and Archive Service'] was a proven software component used to manage scientific data from spaceflight missions. In the transformation, CAS was split into two separate components representing its canonical capabilities: file management and workflow management. In addition, CAS was augmented by addition of a resource-management component. This third component enables CAS to manage heterogeneous computing by use of diverse resources, including high-performance clusters of computers, commodity computing hardware, and grid computing infrastructures. CAS is now more easily maintainable, evolvable, and reusable. These components can be used separately or, taking advantage of synergies, can be used together. Other elements of the transformation included addition of a separate Web presentation layer that supports distribution of data products via Really Simple Syndication (RSS) feeds, and provision for full Resource Description Framework (RDF) exports of metadata.

Mattmann, Chris

An Ontology-Based Archive Information Model for the Planetary Science Community

The Planetary Data System (PDS) information model is a mature but complex model that has been used to capture over 30 years of planetary science data for the PDS archive. As the de-facto information model for the planetary science data archive, it is being adopted by the International Planetary Data Alliance (IPDA) as their archive data standard. However, after seventeen years of evolutionary change the model needs refinement. First a formal specification is needed to explicitly capture the model in a commonly accepted data engineering notation. Second, the core and essential elements of the model need to be identified to help simplify the overall archive process. A team of PDS technical staff members have captured the PDS information model in an ontology modeling tool. Using the resulting knowledge-base, work continues to identify the core elements, identify problems and issues, and then test proposed modifications to the model. The final deliverables of this work will include specifications for the next generation PDS information model and the initial set of IPDA archive data standards. Having the information model captured in an ontology modeling tool also makes the model suitable for use by Semantic Web applications.

Information Model

The semantic planetary data system

This paper will provide a brief overview of the PDS data model and the PDS catalog. It will then describe the implentation of the Semantic PDS including the development of the formal ontology, the generation of RDFS/XML and RDF/XML data sets, and the buiding of the semantic search application.

semantic

Towards a distributed information architecture for avionics data

Avionics data at the National Aeronautics and Space Administration's (NASA) Jet Propulsion Laboratory (JPL consists of distributed, unmanaged, and heterogeneous information that is hard for flight system design engineers to find and use on new NASA/JPL missions. The development of a systematic approach for capturing, accessing and sharing avionics data critical to the support of NASA/JPL missions and projects is required. We propose a general information architecture for managing the existing distributed avionics data sources and a method for querying and retrieving avionics data using the Object Oriented Data Technology (OODT) framework. OODT uses XML messaging infrastructure that profiles data products and their locations using the ISO-11179 data model for describing data products. Queries against a common data dictionary (which implements the ISO model) are translated to domain dependent source data models, and distributed data products are returned asynchronously through the OODT middleware. Further work will include the ability to 'plug and play' new manufacturer data sources, which are distributed at avionics component manufacturer locations throughout the United States.

Information architecture