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Miller, Steve

Publications and source records attributed to Miller, Steve.

Genetic Predictive Factors for Nonsusceptible Phenotypes and Multidrug Resistance in Expanded-Spectrum Cephalosporin-Resistant Uropathogenic Escherichia coli from a Multicenter Cohort: Insights into the Phenotypic and Genetic Basis of Coresistance

Antimicrobial resistance in urinary tract infections (UTIs) is a major public health concern. This study aims to characterize the phenotypic and genetic basis of multidrug resistance (MDR) among expanded-spectrum cephalosporin-resistant (ESCR) uropathogenic Escherichia coli (UPEC) causing UTIs in California patient populations. Between February and October 2019, 577 ESCR UPEC isolates were collected from patients at 6 clinical laboratory sites across California. Lineage and antibiotic resistance genes were determined by analysis of whole-genome sequence data. The lineages ST131, ST1193, ST648, and ST69 were predominant, representing 46%, 5.5%, 4.5%, and 4.5% of the collection, respectively. Overall, 527 (91%) isolates had an expanded-spectrum β-lactamase (ESBL) phenotype, with bla CTX-M-15 , bla CTX-M-27 , bla CTX-M-55 , and bla CTX-M-14 being the most prevalent ESBL genes. In the 50 non-ESBL phenotype isolates, 40 (62%) contained bla CMY-2 , which was the predominant plasmid-mediated AmpC (pAmpC) gene. Narrow-spectrum β-lactamases, bla TEM-1B and bla OXA-1 , were also found in 44.9% and 32.1% of isolates, respectively. Among ESCR UPEC isolates, isolates with an ESBL phenotype had a 1.7-times-greater likelihood of being MDR than non-ESBL phenotype isolates (P < 0.001). The cooccurrence of bla CTX-M-15 , bla OXA-1 , and aac(6')-Ib-cr within ESCR UPEC isolates was strongly correlated. Cooccurrence of bla CTX-M-15 , bla OXA-1 , and aac(6')-Ib-cr was associated with an increased risk of nonsusceptibility to piperacillin-tazobactam, cefepime, fluoroquinolones, and amikacin as well as MDR. Multivariate regression revealed the presence of bla CTX-M-55 , bla TEM-1B , and the ST131 genotype as predictors of MDR.

59 BASIC BIOLOGICAL SCIENCES↗

Acceptor dopant mediated electrical property modification in Bi0.5Na0.5TiO3-based piezoceramic

The effect of Mn and Fe dopants on the electromechanical and electrochemical properties of 0.88[Bi 0.5 Na 0.5 ]TiO 3 –0.08[Bi 0.5 K 0.5 ]TiO 3 –0.04[Bi 0.5 Li 0.5 ]TiO 3 piezoceramic is investigated with particular emphasis on complex impedance in the temperature range from 450 to 600 °C. The impedance spectra have been simulated with equivalent circuits in order to extract bulk and grain boundary characteristics and to determine activation energies of conduction. Mn and Fe dopants considerably enhance the mechanical quality factor and decrease the dielectric loss compared to the undoped composition. Mn doping leads to dramatically higher resistivity in the bulk and a modest increase in the bulk activation energy. On the other hand, conductivity increases dramatically via Fe doping with a significant lowering of activation energy in the bulk and corresponding raising of the activation energy at grain boundaries in comparison to Mn-doped and undoped ceramic. The bulk conductivity of Fe-doped piezoceramic reaches as high as 0.01 S cm -1 at 600 °C.

36 MATERIALS SCIENCE↗

Genomic surveillance reveals multiple introductions of SARS-CoV-2 into Northern California

The coronavirus disease 2019 (COVID-19) pandemic caused by severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) has spread globally, with >365,000 cases in California as of 17 July 2020. We investigated the genomic epidemiology of SARS-CoV-2 in Northern California from late January to mid-March 2020, using samples from 36 patients spanning nine counties and the Grand Princess cruise ship. Phylogenetic analyses revealed the cryptic introduction of at least seven different SARS-CoV-2 lineages into California, including epidemic WA1 strains associated with Washington state, with lack of a predominant lineage and limited transmission among communities. Lineages associated with outbreak clusters in two counties were defined by a single base substitution in the viral genome. These findings support contact tracing, social distancing, and travel restrictions to contain the spread of SARS-CoV-2 in California and other states.

59 BASIC BIOLOGICAL SCIENCES↗

Associations of Early COVID-19 Cases in San Francisco With Domestic and International Travel

In early-to-mid March 2020, 20 of 46 (43%) COVID-19 cases at a tertiary care hospital in San Francisco, California were travel related. Cases were significantly associated with travel to either Europe (odds ratio, 6.1) or New York (odds ratio, 32.9). Viral genomes recovered from 9 of 12 (75%) cases co-clustered with lineages circulating in Europe.

59 BASIC BIOLOGICAL SCIENCES↗

Report of the Basic Energy Sciences Roundtable on Chemical Upcycling of Polymers

Plastics are ubiquitous in modern life. They are primarily made from synthetic carbon-based polymers— organic macromolecules made up of many repeating subunits called monomers—and are designed to be durable and resistant to degradation. Global plastics production has reached a rate of more than 400 million metric tons (MTs) per year, with more than 8 billion MTs produced in the past 50 years. Average production has increased by 36% in the past decade and is projected to grow to 700 million MTs in 2030—about 80 kg of plastics produced for every human on earth. Globally, 20% of discarded plastics are recycled (<10% in the United States), primarily using mechanical processes, and about 25% are incinerated for energy recovery. More than half are deposited into landfills or released into the environment. Thus, discarded plastics pose a long-term environmental challenge: For example, at the current rate of plastics production and disposal, the mass of plastics in the ocean is predicted to exceed the mass of fish by 2050. Current approaches to reducing unwanted plastics are insufficient to address the growing accumulation of discarded plastics. Although incineration eliminates unwanted plastics and recovers some of the energy used to make them, it uses up the potential resource and creates unwanted byproducts. Mechanical recycling—which involves shredding, heating, and remolding of the plastics—is more efficient than making them from petroleum products, using less than half as much energy to generate new plastics. However, mechanical recycling generally degrades, or downcycles, the polymers. Chemical recycling involves deconstruction of polymers by chemical processes to monomers for conversion back into polymers or to molecular intermediates that can be used as fuel or feedstock by the chemical industry. However, present methods (e.g., pyrolysis—high-temperature decomposition in the absence of oxygen), are energy-intensive and require further processing to make products. Chemical upcycling of polymers—the process of selectively converting discarded plastics into chemicals, fuels, or materials with higher value—holds the promise of changing the paradigm for discarded plastic from waste to valued resource. A significant opportunity exists for fundamental research to provide the foundational knowledge required to move toward a circular lifecycle for plastics, in which the chemical constituents of plastics are reformed into polymers or repurposed to give them another life. To identify the fundamental challenges and research opportunities that could accelerate the transformation of discarded plastics to higher-value fuels, chemicals, and materials, the US Department of Energy, Office of Science, Office of Basic Energy Sciences sponsored a Roundtable on Chemical Upcycling of Polymers, which was held near Washington, DC, on April 30–May 1, 2019. This roundtable identified four Priority Research Opportunities to address the complex chemical transformations and physical processes underlying the upcycling of discarded plastics.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Redetection of the Ionospheric H3(+) Signature of Saturn's "Ring Rain"

Abstract In April 2011 Saturn's midlatitude ionospheric H3(+) emissions were detected, exhibiting anomalous (nonsolar) H3(+) latitudinal variations consistent with the transport of water from specific locations in Saturn's rings, known as ''ring rain'' . These products, transported to the planet along the magnetic field, may help to explain the unusual pattern of peaks and troughs in electron densities discovered in Saturn's ionosphere by spacecraft flybys. In the present study, we analyzed H3(+) emissions recorded on 23 April 2013, showing for the first time since the original detection that Saturn's midlatitude H3(+) emissions are indeed heavily modified. Although the 2013 emissions are dimmer by almost a factor of 3.7, the latitudinal contrast is greater and uncertainties are lower. Increased H3(+) intensities were found near planetocentric latitudes of 43 deg, 51 deg, and 63 deg, previously identified with sources at the inner edge of the B ring, A ring, and the orbit of Enceladus and associated E ring.

Ionospheric↗

Sport Transition of JPSS VIIRS Imagery for Night-time Applications

The NASA/Short‐term Prediction, Research, and Transition (SPoRT) Program and NOAA/Cooperative Institute for Research in the Atmosphere (CIRA) work within the NOAA/Joint Polar Satellite System (JPSS) Proving Ground to demonstrate the unique capabilities of the VIIRS instrument. Very similar to MODIS, the VIIRS instrument provides many high‐resolution visible and infrared channels in a broad spectrum. In addition, VIIRS is equipped with a low‐light sensor that is able to detect light emissions from the land and atmosphere as well as reflected sunlight by the lunar surface. This band is referred to as the Day‐Night Band due to the sunlight being used at night to see cloud and topographic features just as one would typically see in day‐time visible imagery. NWS forecast offices that collaborate with SPoRT and CIRA have utilized MODIS imagery in operations, but have longed for more frequent passes of polar‐orbiting data. The VIIRS instrument enhances SPoRT collaborations with WFOs by providing another day and night‐time pass, and at times two additional passes due to its large swath width. This means that multi‐spectral, RGB imagery composites are more readily available to prepare users for their use in GOES‐R era and high‐resolution imagery for use in high‐latitudes is more frequently able to supplement standard GOES imagery within the SPoRT Hybrid GEO‐LEO product. The transition of VIIRS also introduces the new Day‐Night Band capability to forecast operations. An Intensive Evaluation Period (IEP) was conducted in Summer 2013 with a group of "Front Range" NWS offices related to VIIRS night‐time imagery. VIIRS single‐channel imagery is able to better analyze the specific location of fire hotspots and other land features, as well as provide a more true measurement of various cloud and aerosol properties than geostationary measurements, especially at night. Viewed within the SPoRT Hybrid imagery, the VIIRS data allows forecasters to better interpret the more frequent, but coarse GOES Imagery. Night‐time Microphysics and Dust RGB Imagery provides cloud analysis of cloud height, thickness, and composition in order for operational applications such as separating fog from low clouds, dust plume detection, and determining precipitating clouds in radar-void/ blocked regions. The Day‐Night Band has a particular benefit to seeing light from cities, fires, or other emissions as well as the reflection of moonlight off of clouds and smoke plumes, given the right lunar phase and angle. Examples from the VIIRS transition and IEP will be presented.

Fuell, Kevin↗

Mass storage system reference model, Version 4

The high-level abstractions that underlie modern storage systems are identified. The information to generate the model was collected from major practitioners who have built and operated large storage facilities, and represents a distillation of the wisdom they have acquired over the years. The model provides a common terminology and set of concepts to allow existing systems to be examined and new systems to be discussed and built. It is intended that the model and the interfaces identified from it will allow and encourage vendors to develop mutually-compatible storage components that can be combined to form integrated storage systems and services. The reference model presents an abstract view of the concepts and organization of storage systems. From this abstraction will come the identification of the interfaces and modules that will be used in IEEE storage system standards. The model is not yet suitable as a standard; it does not contain implementation decisions, such as how abstract objects should be broken up into software modules or how software modules should be mapped to hosts; it does not give policy specifications, such as when files should be migrated; does not describe how the abstract objects should be used or connected; and does not refer to specific hardware components. In particular, it does not fully specify the interfaces.

Coleman, Sam↗