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Moore, Shirley V.

Publications and source records attributed to Moore, Shirley V..

15 records
All sourcesNASA NTRSDOE OSTI
DOE OSTI2024

Enhancing Network Anomaly Detection Using Graph Neural Networks

In the world of Internet of Things (IoT) networks, where devices are constantly communicating, keeping them secure from cyber threats is critical. This paper introduces a novel approach to detecting unusual and potentially harmful activities in these networks using graph neural networks (GNNs). We combine two specific types of GNNs-GraphSAGE and graph attention networks (GAT)-to create a model that understands and represents the behaviors and interactions in a network. GraphSAGE creates an embedding of network activities by examining local data interactions, while GAT directs the model's focus to the most critical interactions. By integrating these two methods in a single model that considers different types of interactions (both host and flow nodes), we aim to create a system that accurately represents the current state of a network and can also spot anomalies effectively while reducing false positives and negatives. Our innovative approach has demonstrated promising results, achieving an accuracy of 98% on the UNSW-NB15 dataset, significantly outperforming standalone GraphSAGE and GAT models. This underscores its potential as a robust framework for securing IoT networks against cyber threats and anomalies.

Marfo, William↗
DOE OSTI2022

Network Anomaly Detection Using Federated Learning

The internet is turning out to be an integral part of every-one's lives as more and more devices are being connected to serve societal needs. Our work is motivated by two ma-jor observations. Firstly, one drawback of connecting to the network is the threat of network attacks that can compromise users' private information, leading to data loss and adversely affecting productivity. There are several traditional security mechanisms to defend against these attacks, such as firewalls, virtual private networks (VPNs), demilitarized zones (DMZs), and vulnerability scanners. One way to prevent these attacks is early detection and prevention. However, these kinds of architecture do not scale very well because of their centralized nature. Secondly, we observe from heuristics and data set distributions that the majority of the requests made to a server are innocuous. Therefore, almost all server request data sets are highly imbalanced, weighted highly towards the harmless requests.

Marfo, William↗
DOE OSTI2022

High Performance Adaptive Physics Refinement to Enable Large-Scale Tracking of Cancer Cell Trajectory

The ability to track simulated cancer cells through the circulatory system, important for developing a mechanistic understanding of metastatic spread, pushes the limits of today's supercomputers by requiring the simulation of large fluid volumes at cellular-scale resolution. To overcome this challenge, we introduce a new adaptive physics refinement (APR) method that captures cellular-scale interaction across large domains and leverages a hybrid CPU-GPU approach to maximize performance. Through algorithmic advances that integrate multi-physics and multi-resolution models, we establish a finely resolved window with explicitly modeled cells coupled to a coarsely resolved bulk fluid domain. In this work we present multiple validations of the APR framework by comparing against fully resolved fluid-structure interaction methods and employ techniques, such as latency hiding and maximizing memory bandwidth, to effectively utilize heterogeneous node architectures. Collectively, these computational developments and performance optimizations provide a robust and scalable framework to enable system-level simulations of cancer cell transport.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2022

Condition monitoring and anomaly detection in cyber-physical systems

The modern industrial environment is equipping myriads of smart manufacturing machines where the state of each device can be monitored continuously. Such monitoring can help identify possible future failures and develop a cost-effective maintenance plan. However, it is a daunting task to perform early detection with low false positives and negatives from the huge volume of collected data. This requires developing a holistic machine learning framework to address the issues in condition monitoring of high priority components and develop efficient techniques to detect anomalies that can detect and possibly localize the faulty components. This paper presents a comparative analysis of recent machine learning approaches for robust, cost-effective anomaly detection in cyber-physical systems. While detection has been extensively studied, very few researchers have analyzed the localization of the anomalies. We show that supervised learning outperforms unsupervised algorithms. For supervised cases, we achieve near-perfect accuracy of 98% (specifically for tree-based algorithms). In contrast, the best-case accuracy in the unsupervised cases was 63%—the area under the receiver operating characteristic curve (AUC) exhibits similar outcomes as an additional metric.

Marfo, William↗
DOE OSTI2021

Milestone M7 Report: Reducing Excess Data Movement Part 2

This milestone evaluates techniques to measure and, if possible, reduce data movement across all levels of the memory hierarchy, focusing on CPU/GPU page level data movement and on intra-GPU memory hierarchy. We quantitatively evaluate the efficacy of the techniques in reducing data movement and measure how performance tracks data movement reduction. We study a small collection of benchmarks and proxy mini-apps that run on advanced pre-exascale GPUs and on the Accelsim GPU simulator. Our approach has two thrusts: to measure advanced data movement reduction directives and techniques on the newest available GPUs, and to evaluate our benchmark set on simulated GPUs configured with architectural refinements to reduce data movement. We primarily evaluated NVidia-based architectures due to the unavailability of AMD GPU hardware and tools until very recently.

97 MATHEMATICS AND COMPUTING↗
DOE OSTI2021

Propagation Pattern for Moment Representation of the Lattice Boltzmann Method

A propagation pattern for the moment representation of the regularized lattice Boltzmann method (LBM) in three dimensions is presented. Using effectively lossless compression, the simulation state is stored as a set of moments of the lattice Boltzmann distribution function, instead of the distribution function itself. An efficient cache-aware propagation pattern for this moment representation has the effect of substantially reducing both the storage and memory bandwidth required for LBM simulations. This article extends recent work with the moment representation by expanding the performance analysis on central processing unit (CPU) architectures, considering how boundary conditions are implemented, and demonstrating the effectiveness of the moment representation on a graphics processing unit (GPU) architecture.

42 ENGINEERING↗
DOE OSTI2021

The Exascale Framework for High Fidelity coupled Simulations (EFFIS): Enabling whole device modeling in fusion science

We present the Exascale Framework for High Fidelity coupled Simulations (EFFIS), a workflow and code coupling framework developed as part of the Whole Device Modeling Application (WDMApp) in the Exascale Computing Project. EFFIS consists of a library, command line utilities, and a collection of run-time daemons. Together, these software products enable users to easily compose and execute workflows that include: strong or weak coupling, in situ (or offline) analysis/visualization/monitoring, command-and-control actions, remote dashboard integration, and more. We describe WDMApp physics coupling cases and computer science requirements that motivate the design of the EFFIS framework. Furthermore, we explain the essential enabling technology that EFFIS leverages: ADIOS for performant data movement, PerfStubs/TAU for performance monitoring, and an advanced COUPLER for transforming coupling data from its native format to the representation needed by another application. Finally, we demonstrate EFFIS using coupled multi-simulation WDMApp workflows and exemplify how the framework supports the project’s needs. We show that EFFIS and its associated services for data movement, visualization, and performance collection does not introduce appreciable overhead to the WDMApp workflow and that the resource-dominant application’s idle time while waiting for data is minimal.

97 MATHEMATICS AND COMPUTING↗
DOE OSTI2020

QCOR; A Language Extension Specification for the Heterogeneous Quantum-Classical Model of Computation

Quantum computing (QC) is an emerging computational paradigm that leverages the laws of quantum mechanics to perform elementary logic operations. Existing programming models for QC were designed with fault-tolerant hardware in mind, envisioning stand-alone applications. However, the susceptibility of near-term quantum computers to noise limits their stand-alone utility. To better leverage limited computational strengths of noisy quantum devices, hybrid algorithms have been suggested whereby quantum computers are used in tandem with their classical counterparts in a heterogeneous fashion. This modus operandi calls out for a programming model and a high-level programming language that natively and seamlessly supports heterogeneous quantum-classical hardware architectures in a single-source-code paradigm. Motivated by the lack of such a model, we introduce a language extension specification, called QCOR, which enables single-source quantum-classical programming. Programs written using the QCOR library–based language extensions can be compiled to produce functional hybrid binary executables. After defining QCOR’s programming model, memory model, and execution model, we discuss how QCOR enables variational, iterative, and feed-forward QC. Additionally, QCOR approaches quantum-classical computation in a hardware-agnostic heterogeneous fashion and strives to build on best practices of high-performance computing. The high level of abstraction in the language extension is intended to accelerate the adoption of QC by researchers familiar with classical high-performance computing.

97 MATHEMATICS AND COMPUTING↗
DOE OSTI2019

Quantum chemistry as a benchmark for near-term quantum computers

We present a quantum chemistry benchmark for noisy intermediate-scale quantum computers that leverages the variational quantum eigensolver, active-space reduction, a reduced unitary coupled cluster ansatz, and reduced density purification as error mitigation. We demonstrate this benchmark using 4 of the available qubits on the 20-qubit IBM Tokyo and 16-qubit Rigetti Aspen processors via the simulation of alkali metal hydrides (NaH, KH, RbH), with accuracy of the computed ground state energy serving as the primary benchmark metric. We further parameterize this benchmark suite on the trial circuit type, the level of symmetry reduction, and error mitigation strategies. Our results demonstrate the characteristically high noise level present in near-term superconducting hardware, but provide a relevant baseline for future improvement of the underlying hardware, and a means for comparison across near-term hardware types. We also demonstrate how to reduce the noise in post processing with specific error mitigation techniques. Particularly, the adaptation of McWeeny purification of noisy density matrices dramatically improves accuracy of quantum computations, which, along with adjustable active space, significantly extends the range of accessible molecular systems. We demonstrate that for specific benchmark settings and a selected range of problems, the accuracy metric can reach chemical accuracy when computing over the cloud on certain quantum computers.

97 MATHEMATICS AND COMPUTING↗
DOE OSTI2019

Analyzing the suitability of contemporary 3D-stacked PIM architectures for HPC scientific applications

Scaling off-chip bandwidth is challenging due to fundamental limitations, such as a fixed pin count and plateauing signaling rates. Recently, vendors have turned to 2.5D and 3D stacking to closely integrate system components. Interestingly, these technologies can integrate a logic layer under multiple memory dies, enabling computing capability inside a memory stack. This trend in stacking is making PIM architectures commercially viable. In this work, we investigate the suitability of offloading kernels in scientific applications onto 3D stacked PIM architectures. We evaluate several hardware constraints resulted from the stacked structure. We perform extensive simulation experiments and in-depth analysis to quantify the impact of application locality in TLBs, data caches, and memory stacks. Our results also identify design optimization areas in software and hardware for HPC scientific applications.

Peng, Ivy Bo↗
DOE OSTI2018

Prometheus: Coherent Exploration of Hardware and Software Optimizations using Aspen

With the dramatic increase in scale expected for Exascale computing, there is a dire need for tuning of hardware configurations and software optimizations such that they are in unison. However, the expected increase in tunable hardware parameters makes searching through the design space for optimal hardware-and-software configurations much more challenging. Towards this end, we propose a composable hardware-software optimization framework called Prometheus. Prometheus uses a combination of analytical and machine-learning techniques to capture application characteristics and subsequently determine the hardware-software configuration for near-optimal performance. We evaluate Prometheus for its efficacy using four widely used proxy applications: LULESH, CoMD, CG and CoEVP. We demonstrate that Prometheus identifies near-optimal hardwaresoftware configurations and verify the results via brute-force search of the design space.

Umar, Mariam↗
DOE OSTI2018

Tuyere: Enabling Scalable Memory Workloads for System Exploration

Memory technologies are under active development. Meanwhile, workloads on contemporary computing systems are increasing rapidly in size and diversity. Such dynamics in hardware and software further widen the gap between memory system design and performance evaluation. In this work, we propose a data-centric abstraction of high-performance computing applications for fast exploration of new memory technologies. We also provide a framework that uses a formal modeling language to describe the abstraction, automatically translates abstractions into memory traffic, and directly interfaces with cycle-accurate simulators. We evaluated the framework using 20 workloads and validated the memory traffic profile, the simulation results, and the relative memory changes of four memory technologies. Our results show that the data-centric abstraction can accurately capture application behavior adaptable to different input problems and can expedite system exploration.

Peng, Ivy Bo↗
DOE OSTI2017

Aspen-based performance and energy modeling frameworks

Now with the anticipation of exascale architectures, energy consumption is becoming one of the critical design parameters, especially in light of the energy budget of 20-30 Megawatts set by the U.S. Department of Energy. Understanding an application’s execution pattern and its energy footprint is critical to improving application operation on a diverse heterogeneous architecture. Applying application-specific performance optimization can consequently improve energy consumption. However, this approach is only applicable to current systems. As we enter a new era of exascale architectures that is projected to contain more complex memory hierarchies, increased levels of parallelism, heterogeneity in hardware, and complex programming models and techniques, energy and performance management is getting more cumbersome. We therefore propose techniques that predict the energy consumption beforehand or at runtime to enable proactive tuning. Such energy prediction approaches must be generic and adapt themselves at runtime to changing application and hardware configurations. Most existing energy estimation and prediction approaches are empirical in nature and thus tied to current systems. To overcome this limitation, we propose two energy estimation techniques: ACEE (Algorithmic and Categorical Energy Estimation), which uses a combination of analytical and empirical modeling techniques; and AEEM (Aspen’s Embedded Energy Estimation), a system-level analytical energy estimation technique. Both of these models incorporate the Aspen domain specific language for performance modeling. We present the methodologies of these two models and test their accuracy using five proxy applications. We also describe three use cases.

79 ASTRONOMY AND ASTROPHYSICS↗