Engineering topics

O'Connell, Richard J.

Publications and source records attributed to O'Connell, Richard J..

10 records

DOE OSTI2024

Three-Dimensional Ultrastructure of Arabidopsis Cotyledons Infected with Colletotrichum higginsianum

We used serial block-face scanning electron microscopy (SBF-SEM) to study the host–pathogen interface between Arabidopsis cotyledons and the hemibiotrophic fungus Colletotrichum higginsianum. By combining high-pressure freezing and freeze-substitution with SBF-SEM, followed by segmentation and reconstruction of the imaging volume using the freely accessible software IMOD, we created 3D models of the series of cytological events that occur during the Colletotrichum–Arabidopsis susceptible interaction. We found that the host cell membranes underwent massive expansion to accommodate the rapidly growing intracellular hypha. As the fungal infection proceeded from the biotrophic to the necrotrophic stage, the host cell membranes went through increasing levels of disintegration culminating in host cell death. Intriguingly, we documented autophagosomes in proximity to biotrophic hyphae using transmission electron microscopy (TEM) and a concurrent increase in autophagic flux between early to mid/late biotrophic phase of the infection process. Occasionally, we observed osmiophilic bodies in the vicinity of biotrophic hyphae using TEM only and near necrotrophic hyphae under both TEM and SBF-SEM. Overall, we established a method for obtaining serial SBF-SEM images, each with a lateral ( x-y) pixel resolution of 10 nm and an axial ( z) resolution of 40 nm, that can be reconstructed into interactive 3D models using the IMOD. Application of this method to the Colletotrichum–Arabidopsis pathosystem allowed us to more fully understand the spatial arrangement and morphological architecture of the fungal hyphae after they penetrate epidermal cells of Arabidopsis cotyledons and the cytological changes the host cell undergoes as the infection progresses toward necrotrophy. [Formula: see text] Copyright © 2024 The Author(s). This is an open access article distributed under the CC BY 4.0 International license .

Biochemistry & Molecular Biology↗

DOE OSTI2022

The development of extracellular vesicle markers for the fungal phytopathogen Colletotrichum higginsianum

Fungal phytopathogens secrete extracellular vesicles (EVs) associated with enzymes and phytotoxic metabolites. While these vesicles are thought to promote infection, defining the true contents and functions of fungal EVs, as well as suitable protein markers, is an ongoing process. To expand our understanding of fungal EVs and their possible roles during infection, we purified EVs from the hemibiotrophic phytopathogen Colletotrichum higginsianum, the causative agent of anthracnose disease in multiple plant species, including Arabidopsis thaliana. EVs were purified in large numbers from the supernatant of protoplasts but not the supernatant of intact mycelial cultures. We purified two separate populations of EVs, each associated with over 700 detected proteins, including proteins involved in vesicle transport, cell wall biogenesis and the synthesis of secondary metabolites. We selected two SNARE proteins (Snc1 and Sso2) and one 14-3-3 protein (Bmh1) as potential EV markers and generated transgenic strains expressing fluorescent fusions. Each marker was confirmed to be protected inside EVs. Fluorescence microscopy was used to examine the localization of each marker during infection on Arabidopsis leaves. These findings further our understanding of EVs in fungal phytopathogens and will help build an experimental system to study EV interkingdom communication between plants and fungi.

14-3-3 proteins↗

NASA NTRS1993

The interaction of plume heads with compositional discontinuities in the Earth's mantle

The effects of compositional discontinuities of density and viscosity in the Earth's mantle on the ascent of mantle plume heads is studied using a boundary integral numerical technique. Three specific problems are considered: (1) a plume head rising away from a deformable interface, (2) a plume head passing through an interface, and (3) a plume head approaching the surface of the Earth. For the case of a plume attached to a free-surface, the calculated time-dependent plume shapesare compared with experimental results. Two principle modes of plume head deformation are observed: plume head elingation or the formation of a cavity inside the plume head. The inferred structure of mantle plumes, namely, a large plume head with a long tail, is characteristic of plumes attached to their source region, and also of buoyant material moving away from an interface and of buoyant material moving through an interface from a high- to low-viscosity region. As a rising plume head approaches the upper mantle, most of the lower mantle will quickly drain from the gap between the plume head and the upper mantle if the plume head enters the upper mantle. If the plume head moves from a high- to low-viscosity region, the plume head becomes significantly elongated and, for the viscosity contrasts thought to exist in the Earth, could extend from the 670 km discontinuity to the surface. Plume heads that are extended owing to a viscosity decrease in the upper mantle have a cylindrical geometry. The dynamic surface topography induced by plume heads is bell-shaped when the top of the plume head is at depths greater than about 0.1 plume head radii. As the plume head approaches the surface and spreads, the dynamic topography becomes plateau-shaped. The largest stresses are produced in the early stages of plume spreading when the plume head is still nearly spherical, and the surface expression of these stresses is likely to be dominated by radial extension. As the plume spreads, compressional stresses on the surface are produced beyond the edges of the plume; consequently, extensional features will be produced above the plume head and may be surrounded by a ring of compressional features.

Manga, Michael↗

NASA NTRS1993

Deformation of a weak subducted slab and variation of seismicity with depth

Numerical simulations of slab evolution are used here to show that a weak slab model is consistent with seismic observations. Assuming that earthquakes occur at a rate proportional to deformation rate, the observed variation with depth of seismicity rate and focal mechanisms is reproduced along with the cessation of seismicity at 670 km depth. Provided that sinking material encounters resistance at depth, the pattern of seismicity can be explained by any mechanism for deep earthquakes in which the rate of seismicity is proportional to strain rate in the slab.

Tao, Winston C.↗

NASA NTRS1992

Ablative subduction - A two-sided alternative to the conventional subduction model

The plausibility of a two-sided fluid-based model of lithospheric subduction that is based upon current views of lithospheric structure is examined. In this model the viscous lower lithosphere flows downward, and the brittle upper lithosphere deforms in passive response. This process is potentially double-sided, since it is found that even a buoyant plate can be dragged downward by a dense descending neighbor. Thus an apparent overriding plate may be worn away by a process of viscous ablation, with the rate of ablation a function of plate buoyancy. This process, called 'ablative subduction,' makes it possible to simply interpret observations concerning slab profiles, interplate seismicity, back arc tectonics, and complex processes such as double subduction and subduction polarity reversal. When experiments modeling the evolution of simple fluid 'slabs' are performed, slab profile is found to be strongly influenced by ablation in the overriding plate. When ablation is weak, as when a buoyant continent borders the trench, deformable slabs adopt shallow Andean-style profiles.

Tao, Winston C.↗

NASA NTRS1991

Deformation of the central Andes (15-27 deg S) derived from a flow model of subduction zones

A simple viscous flow model of a subduction zone is used to calculate the deformation within continental lithosphere above a subducting slab. This formulation accounts for two forces that dominate the deformation in the overriding lithosphere: tectonic forces and buoyancy forces. Numerical solutions, obtained by using a finite element technique, are compared with observations from the central Andes (15-27 deg S). The model predicts the observed deformation pattern of extension in the forearc, compression in the Western Monocline (corresponding to magmatic activity), extension in the Altiplano, compression in the Eastern Monocline and Subandes, and no deformation in the Brazilian Shield. By comparing the calculated solutions with the large-scale tectonic observations, the forces that govern the deformation in the central Andes are evaluated. The approximately constant subduction velocity in the past 26 million years suggests that the rate of crustal shortening in the Andes has decreased with time due to the thickening of the crust.

Wdowinski, Shimon↗

NASA NTRS1991

Convection in three dimensions with surface plates - Generation of toroidal flow

This work presents numerical calculations of mantle convection that incorporate some of the basic observational constraints imposed by plate tectonics. The model is three-dimensional and includes surface plates; it allows plate velocity to change dynamically according to the forces which result from convection. It is shown that plates are an effective means of introducing a toroidal component into the flow field. After initial transients the plate motion is nearly parallel to transform faults and in the direction that tends to minimize the toroidal flow field. The toroidal field decays with depth from its value at the surface; the poloidal field is relatively constant throughout the layer but falls off slightly at the top and bottom boundaries. Layered viscosity increasing with depth causes the toroidal field to decay more rapidly, effectively confining it to the upper, low-viscosity layer. The effect of viscosity layering on the poloidal field is relatively small, which is attributed to its generation by temperature variations distributed throughout the system. The generation of toroidal flow by surface plates would seem to account for the observed nearly equal energy of toroidal and poloidal fields of plate motions on the earth. A low-viscosity region in the upper mantle will cause the toroidal flow to decay significantly before reaching the lower mantle. The resulting concentration of toroidal flow in the upper mantle may result in more thorough mixing there and account for some of the geochemical and isotopic differences proposed to exist between the upper and lower mantles.

Gable, Carl W.↗

NASA NTRS1991

Tomography, the geoid and plate motions

The dynamics of the earth's mantle and its relationship to mantle structure as revealed by seismic tomography, the geoid, and plate motions are discussed in a critical review of U.S. research from the period 1987-1990. Sections are devoted to plates and mantle convection; seismic anomalies, flow, and the geoid; subducted slabs and the 670-km discontinuity; the physical properties of the mantle; plumes; and computational and experimental modeling efforts. Also included is a comprehensive bibliography for the period.

Gable, Carl W.↗

NASA NTRS1990

On the choice of boundary conditions in continuum models of continental deformation

Recent studies of continental deformation have treated the lithosphere as a viscous medium and investigated the time evolution of the deformation caused by tectonic and buoyancy forces. This paper examines the differences between (1) continuum models that keep velocity boundary conditions constant with time and (2) models that keep stress boundary conditions constant with time. These differences are demonstrated by using a simple example of a continental lithosphere that is subjected to horizontal compression. The results show that in (2) the indentation velocity decreases with time, while in (1) the indentation velocity remains constant with time.

Wdowinski, Shimon↗

NASA NTRS1989

A continuum model of continental deformation above subduction zones - Application to the Andes and the Aegean

A continuum model of continental deformation above subduction zones was developed that combines the viscous sheet and the corner flow models; the continental lithosphere is described by a two-dimensional sheet model that considers basal drag resulting from the viscous asthenosphere flow underneath, and a corner flow model with a deforming overlying plate and a rigid subducting plate is used to calculate the shear traction that acts on the base of the lithosphere above a subduction zone. The continuum model is applied to the Andes and the Aegean deformations, which represent, respectively, compressional and extensional tectonic environments above subduction zones. The models predict that, in a compressional environment, a broad region of uplifted topography will tend to develop above a more steeply dippping slab, rather than above a shallower slab, in agreement with observations in the various segments of the central Andes. For an extensional environment, the model predicts that a zone of compression can develop near the trench, and that extensional strain rate can increase with distance from the trench, as is observed in the Aegean.

Wdowinski, Shimon↗