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Pilla, Rachel M.

Publications and source records attributed to Pilla, Rachel M..

The 2024 “Hacking Limnology” Workshop Series and Virtual Summit: Increasing Inclusion, Participation, and Representation in the Aquatic Sciences

The 4th Aquatic Ecosystem MOdeling Network—Junior (AEMON-J) Hacking Limnology Workshop and 5th Virtual Summit: Incorporating Data Science and Open Science in the Aquatic Sciences (DSOS) convened 15–19 July 2024. During the week, these joint communities engaged in activities at the intersection of big data, open science, modeling, remote sensing, and the aquatic sciences. The weeklong event, with over 100 aquatic science practitioners and enthusiasts, followed a similar structure to previous years, comprising three days of workshops followed by two days of the virtual summit.

54 ENVIRONMENTAL SCIENCES↗

Shifts in Carbon Emissions Versus Sequestration From Hydropower Reservoirs in the Southeastern United States

Reservoirs are a significant source of carbon (C) to the atmosphere, but their emission rates vary in space and time. Here we compared C emissions via diffusive and ebullitive pathways at several stations in six large hydropower reservoirs in the southeastern US that were previously sampled in summer 2012. We found that carbon dioxide (CO 2 ) diffusion was the dominant flux pathway during 2012 and 2022, with only three exceptions where methane (CH 4 ) diffusion or CH 4 ebullition dominated. CH 4 diffusion rates were positively associated with water temperature. However, we found no clear predictors of CH 4 ebullition, which had extremely high variability, with rates ranging from 0 to 739 mg C m -2 day -1 . For CO 2 diffusion, the direction of the flux shifted between 2012 and 2022, where all but three stations across all reservoirs emitted CO 2 in summer 2012, but every station sequestered CO 2 in summer 2022. Here, indicators of greater algal production were associated with CO 2 sequestration, including surface chlorophyll- a concentration, surface dissolved oxygen saturation, and pH. Additional sampling campaigns outside the summer season highlighted the importance of seasonal phenology in primary production on the direction of CO 2 diffusive fluxes, which shifted to positive CO 2 fluxes by the end of August as productivity decreased. Our results demonstrate the importance of capturing CO 2 sequestration in field and modeling measurements and understanding the seasonal drivers of these estimates. Measuring C emissions from multiple pathways in reservoirs and understanding their spatiotemporal responses and variability are vital to reducing uncertainties in global upscaling efforts.

13 HYDRO ENERGY↗

Wildfire smoke impacts lake ecosystems

Abstract Wildfire activity is increasing globally. The resulting smoke plumes can travel hundreds to thousands of kilometers, reflecting or scattering sunlight and depositing particles within ecosystems. Several key physical, chemical, and biological processes in lakes are controlled by factors affected by smoke. The spatial and temporal scales of lake exposure to smoke are extensive and under‐recognized. We introduce the concept of the lake smoke‐day, or the number of days any given lake is exposed to smoke in any given fire season, and quantify the total lake smoke‐day exposure in North America from 2019 to 2021. Because smoke can be transported at continental to intercontinental scales, even regions that may not typically experience direct burning of landscapes by wildfire are at risk of smoke exposure. We found that 99.3% of North America was covered by smoke, affecting a total of 1,333,687 lakes ≥10 ha. An incredible 98.9% of lakes experienced at least 10 smoke‐days a year, with 89.6% of lakes receiving over 30 lake smoke‐days, and lakes in some regions experiencing up to 4 months of cumulative smoke‐days. Herein we review the mechanisms through which smoke and ash can affect lakes by altering the amount and spectral composition of incoming solar radiation and depositing carbon, nutrients, or toxic compounds that could alter chemical conditions and impact biota. We develop a conceptual framework that synthesizes known and theoretical impacts of smoke on lakes to guide future research. Finally, we identify emerging research priorities that can help us better understand how lakes will be affected by smoke as wildfire activity increases due to climate change and other anthropogenic activities.

54 ENVIRONMENTAL SCIENCES↗

National-scale remotely sensed lake trophic state from 1984 through 2020

Lake trophic state is a key ecosystem property that integrates a lake’s physical, chemical, and biological processes. Despite the importance of trophic state as a gauge of lake water quality, standardized and machine-readable observations are uncommon. Remote sensing presents an opportunity to detect and analyze lake trophic state with reproducible, robust methods across time and space. We used Landsat surface reflectance data to create the first compendium of annual lake trophic state for 55,662 lakes of at least 10 ha in area throughout the contiguous United States from 1984 through 2020. The dataset was constructed with FAIR data principles (Findable, Accessible, Interoperable, and Reproducible) in mind, where data are publicly available, relational keys from parent datasets are retained, and all data wrangling and modeling routines are scripted for future reuse. Together, this resource offers critical data to address basic and applied research questions about lake water quality at a suite of spatial and temporal scales.

54 ENVIRONMENTAL SCIENCES↗

Anoxia begets anoxia: A positive feedback to the deoxygenation of temperate lakes

Abstract Declining oxygen concentrations in the deep waters of lakes worldwide pose a pressing environmental and societal challenge. Existing theory suggests that low deep‐water dissolved oxygen (DO) concentrations could trigger a positive feedback through which anoxia (i.e., very low DO) during a given summer begets increasingly severe occurrences of anoxia in following summers. Specifically, anoxic conditions can promote nutrient release from sediments, thereby stimulating phytoplankton growth, and subsequent phytoplankton decomposition can fuel heterotrophic respiration, resulting in increased spatial extent and duration of anoxia. However, while the individual relationships in this feedback are well established, to our knowledge, there has not been a systematic analysis within or across lakes that simultaneously demonstrates all of the mechanisms necessary to produce a positive feedback that reinforces anoxia. Here, we compiled data from 656 widespread temperate lakes and reservoirs to analyze the proposed anoxia begets anoxia feedback. Lakes in the dataset span a broad range of surface area (1–126,909 ha), maximum depth (6–370 m), and morphometry, with a median time‐series duration of 30 years at each lake. Using linear mixed models, we found support for each of the positive feedback relationships between anoxia, phosphorus concentrations, chlorophyll a concentrations, and oxygen demand across the 656‐lake dataset. Likewise, we found further support for these relationships by analyzing time‐series data from individual lakes. Our results indicate that the strength of these feedback relationships may vary with lake‐specific characteristics: For example, we found that surface phosphorus concentrations were more positively associated with chlorophyll a in high‐phosphorus lakes, and oxygen demand had a stronger influence on the extent of anoxia in deep lakes. Taken together, these results support the existence of a positive feedback that could magnify the effects of climate change and other anthropogenic pressures driving the development of anoxia in lakes around the world.

54 ENVIRONMENTAL SCIENCES↗

Understanding How Reservoir Operations Influence Methane Emissions: A Conceptual Model

Because methane is a potent greenhouse gas (GHG), understanding controls on methane emissions from reservoirs is an important goal. Yet, reservoirs are complex ecosystems, and mechanisms by which reservoir operations influence methane emissions are poorly understood. In part, this is because emissions occur in ‘hot spots’ and ‘hot moments’. In this study, we address three research questions, ‘What are the causal pathways through which reservoir operations and resulting water level fluctuations (WLF) influence methane emissions?’; ‘How do influences from WLF differ for seasonal drawdown and diurnal hydropeaking operations?’; and ‘How does understanding causal pathways inform practical options for mitigation?’. A graphical conceptual model is presented that links WLF in reservoirs to methane emissions via four causal pathways: (1) water-column mixing (2) drying–rewetting cycles, (3) sediment delivery and redistribution, and (4) littoral vegetation. We review what is known about linkages for WLF at seasonal and diurnal resolutions generate research questions, and hypothesize strategies for moderating methane emissions by interrupting each causal pathway. Those related to flow management involve basin-scale management of tributary flows, seasonal timing of hydropeaking (pathway #1), timing and rates of drawdown (pathway #2). In addition, we describe how sediment (pathway #3) and vegetation management (pathway #4) could interrupt linkages between WLF and emissions. We demonstrate the strength of conceptual modeling as a tool for generating plausible hypotheses and suggesting mitigation strategies. Future research is needed to develop simpler models at appropriate timescales that can be validated and used to manage flow releases from reservoirs.

13 HYDRO ENERGY↗

Integrating Reservoirs into the Dissolved Organic Matter Versus Primary Production Paradigm: How Does Chlorophyll-$a$ Change Across Dissolved Organic Carbon Concentrations in Reservoirs?

Primary production in freshwater ecosystems is largely a function of light and nutrient availability, both of which have been changing in many lakes and reservoirs in response to anthropogenic pressures. Recent studies focusing on natural lakes have found a hump-shaped response of primary production (sometimes measured as chlorophyll-$a$) to dissolved organic matter (DOM, measured as dissolved organic carbon, DOC), which has both light-absorbing chromophoric properties and DOM-bound nutrients. We used the United States National Lakes Assessment dataset to integrate reservoirs into this paradigm in comparison with natural lakes and assessed the relative differences in the predicted response’s model structure, regression parameter values, and drivers of the chlorophyll-$a$ residuals. We found that chlorophyll-$a$ in reservoirs exhibited a hump-shaped response to DOC, while natural lakes from this dataset were better fit with a linear response, differing from previous studies focused on boreal lakes. Despite this, reservoirs had a greater maximum chlorophyll-a response compared to natural lakes in this study (45.5 versus 33.8 μg L -1 ), which occurred at a lower DOC concentration threshold (18.3 versus 26.4 mg L -1 ) when compared using quadratic models. Reservoirs had lower median light:nutrient values compared to natural lakes, and greater median surface area and total phosphorus (TP), that can all influence the light environment and the peak chlorophyll-a responses. In both reservoirs and natural lakes, chlorophyll-$a$ residuals were most strongly influenced by TP, where TP < 25-30 µg L -1 suppressed chlorophyll-a residuals and higher TP amplified them. Light:nutrient values were somewhat important predictors, and patterns with chlorophyll-$a$ residuals supported previous work showing low light:nutrient values amplified chlorophyll-$a$ responses and higher values suppressed them. In conclusion, quantifying the shape of the response of primary production to DOM quantity and quality as well as the drivers of the residuals, namely TP for lakes and reservoirs in this dataset, will be important for understanding the effects that changes in water quality may have on primary production and freshwater ecosystem processes.

59 BASIC BIOLOGICAL SCIENCES↗

Remedial effectiveness of a pond biomanipulation: Habitat value and concentrations of polychlorinated biphenyls in fish

The fish and plant communities in a pond contaminated with polychlorinated biphenyls (PCBs) in East Tennessee, USA, were manipulated to reduce ecological and human-health risk associated with exposure to the chemical contaminants. We evaluated the success of the remedial action using a habitat valuation approach, as well as measuring PCB concentrations in fish. Risk reduction objectives included: alter the fish community to favor fish that do not resuspend, bioaccumulate, or biomagnify PCBs; stabilize contaminated sediments to improve water quality; and stabilize shoreline soils and enhance riparian habitat. Fish targeted for removal included gizzard shad, largemouth bass, and nonnative carp. Reduced PCB concentrations in fish have characterized the new bluegill-dominated community, although a weir-overtopping event led to the need for additional removals of gizzard shad and largemouth bass. Sunfish abundance is high, as was intended. Moreover, amphibian and waterbird diversities have increased in the years following biomanipulation, possibly owing to improvements in the riparian zone and increased structural (vegetation) complexity in both the aquatic and terrestrial environment. Thus, the remedial action has improved aspects of habitat value, and PCB concentrations in sunfish have dropped below the remediation level (risk-based target value) for this pond (1 µg/g in fish fillets or 2.3 µg/g in whole body fish).

63 RADIATION, THERMAL, AND OTHER ENVIRON. POLLUTAN↗