Engineering topics
Pope, Jenna (Bilbrey)
Publications and source records attributed to Pope, Jenna (Bilbrey).
pnnl/Active-Sampling-for-Atomistic-Potentials
This software contains a routine for active sampling of a DFT-generated dataset for training a neural network potential (SchNet). Major updates to the base SchNet code are also included to accommodate large systems (100s of atoms). We also provide code to apply the neural network potential in dynamic shear simulations.
pnnl/galas
Codebase for analyzing large atomistic simulation results using graph analytics. Analysis of large molecular simulations is difficult due to size and memory constrains in commonly used analysis software. This code was developed to analyze an ~8 million atom polycrystalline Al system under shear, with a particular emphasis on identifying defect structures. This code applies graph theory to reduce the system to components of interest and applies associated algorithms to characterize these components.
pnnl/mol_dgnn
Molecular dynamics simulations often rely on parameterized atomistic potentials, which can be inaccurate compared to ab initio simulation methods. However, dynamic ab initio simulations come with high computational cost. Deep learning techniques offer a method to obtain both high accuracy and low cost predictions of dynamics. Our method gives a prediction of the structural dynamics of a molecule accounting for the prior dynamics, giving high-accuracy predictions at low computational cost