Engineering topics

Riley, William

Publications and source records attributed to Riley, William.

13 records

DOE OSTI2026

The underappreciated importance of small wetlands in global methane emissions

Small wetlands remain underappreciated in the global methane budget. Using 30-m resolution remote sensing data, we identified 163.6 million small wetlands (<1 km²) worldwide, contributing 24.6% of total wetland methane emissions. Notably, methane emissions from small wetlands increased by 12.4% over 2003-2022. Tropical and very small (<0.1 km²) wetlands are the largest sources of the methane emissions and increases. Improved emission estimates of small wetlands are key to the global methane budget.

Li, Fa↗

DOE OSTI2025

Hydrology controls thermokarst and alters carbon cycling and methane emissions in peatlands near the southern limit of permafrost: Model Inputs and Outputs

This dataset contains model inputs and simulation outputs associated with the study “Hydrology controls thermokarst and alters carbon cycling and methane emissions in peatlands near the southern limit of permafrost.” The ecosys model was extended to represent thermokarst processes in laterally coupled two-dimensional transects and applied to the Scotty Creek basin (Northwest Territories, Canada). The ecosys model and documentation is available for download at https://github.com/jinyun1tang/ECOSYS. The dataset contains the inputs used to run the model for this study (meteorological forcing data (1950–2018) and site-specific soil and vegetation parameters) and model outputs used to generate Figure 3 and Figure 4 in the paper (simulated ground thermal and hydrologic states, vegetation dynamics, and carbon fluxes).

54 ENVIRONMENTAL SCIENCES↗

DOE OSTI2024

Experimental Soil Warming Impacts Soil Moisture and Plant Water Stress and Thereby Ecosystem Carbon Dynamics (Blodgett, CA)

This dataset contains data on daily soil temperature, moisture and flux, and soil carbon stock and root biomass across a soil profile down to 100 cm depth at Blodgett Forest Research Station, CA, USA. These data were generated to determine if modeling of an experimental soil warming of 4C showed increased soil CO2 emissions and changes in bulk soil carbon stocks with depth consistent with field observations, as part of the study: Riley et al. (2025) Experimental Soil Warming Impacts Soil Moisture and Plant Water Stress and Thereby Ecosystem Carbon Dynamics in Journal of Advances in Modeling Earth Systems. This research was performed within the framework of the TES Belowground Biogeochemistry SFA project, in particular association with a 1 m-deep experimental soil heating experiment at the University of California Blodgett Forest Research Station, California (120 ° 39′40′′W; 38 ° 54′43′′N). Continuous data were collected at the plot level, and bulk soil carbon and root biomass were sampled once a year from each plot from 0-100 cm, in 10 cm intervals. Measurements relevant to the current study include soil temperature and soil volumetric water content measured continuously at multiple depths in the top meter; fine root biomass and SOC stocks measured from annual soil cores. Soil flux was continuously monitored using a LI-8100 Automated CO2 Flux System in conjunction with the LI-8150 Multiplexer (Licor, Nebraska, USA). Soil flux was determined using SoilFluxPro software, with flux values showing an R² fit of less than 0.9 being excluded from the analysis. Data were collected from each paired plot (1-3): one control (C) and one heated (H).

54 ENVIRONMENTAL SCIENCES↗

DOE OSTI2023

Upscaling Wetland Methane Emissions From the FLUXNET–CH4 Eddy Covariance Network (UpCH4 v1.0): Model Development, Network Assessment, and Budget Comparison

Wetlands are responsible for 20%–31% of global methane (CH 4 ) emissions and account for a large source of uncertainty in the global CH 4 budget. Data-driven upscaling of CH 4 fluxes from eddy covariance measurements can provide new and independent bottom-up estimates of wetland CH 4 emissions. Here, we develop a six-predictor random forest upscaling model (UpCH4), trained on 119 site-years of eddy covariance CH 4 flux data from 43 freshwater wetland sites in the FLUXNET-CH4 Community Product. Network patterns in site-level annual means and mean seasonal cycles of CH 4 fluxes were reproduced accurately in tundra, boreal, and temperate regions (Nash-Sutcliffe Efficiency ~0.52–0.63 and 0.53). UpCH4 estimated annual global wetland CH 4 emissions of 146 ± 43 TgCH 4 y –1 for 2001–2018 which agrees closely with current bottom-up land surface models (102–181 TgCH 4 y –1 ) and overlaps with top-down atmospheric inversion models (155–200 TgCH 4 y –1 ). However, UpCH4 diverged from both types of models in the spatial pattern and seasonal dynamics of tropical wetland emissions. We conclude that upscaling of eddy covariance CH 4 fluxes has the potential to produce realistic extra-tropical wetland CH 4 emissions estimates which will improve with more flux data. To reduce uncertainty in upscaled estimates, researchers could prioritize new wetland flux sites along humid-to-arid tropical climate gradients, from major rainforest basins (Congo, Amazon, and SE Asia), into monsoon (Bangladesh and India) and savannah regions (African Sahel) and be paired with improved knowledge of wetland extent seasonal dynamics in these regions.

54 ENVIRONMENTAL SCIENCES↗

DOE OSTI2023

Present and Future Changes in Land‐Atmosphere Coupling of Water and Energy Over Extratropical Forest Regions

Abstract Couplings between land and the near surface atmosphere are modulated by interactions between soil conditions, vegetation dynamics, turbulent fluxes, and atmospheric properties. How the land‐atmosphere coupling responds to warming and elevated CO 2 are important for understanding the land surface carbon, energy, and water cycles. In this work, we documented this coupled land‐atmosphere network based on observations and the Energy Exascale Earth System Model (E3SM) simulations over extratropical forest ecosystems. We employed a transfer entropy approach and novel network metrics to reveal patterns and strength of the land‐atmosphere coupling under historical conditions and a future high emission scenario (SSP585). We found that, in observations, the present‐day extratropical forest coupling network has high network connectivity (72%–88% of the targeted processes are coupled). E3SM reasonably captured the extratropical forest coupling network (modeled network connectivity was 81%–96%) and predicted that the coupling strength would significantly increase by 28% (±3%) under warming and elevated CO 2 conditions. Furthermore, E3SM factorial coupled experiments suggested that warming enhanced soil nitrogen mineralization favoring plant nitrogen uptake and vegetation growth were responsible for the strengthening future land‐atmosphere coupling. This work provides new metrics to analyze and document complex couplings for coupled earth system processes and highlights the important roles soil nutrient availability and biogeochemistry have on land‐atmosphere coupling.

54 ENVIRONMENTAL SCIENCES↗

DOE OSTI2022

Non-growing Season Plant Nutrient Uptake Controls Arctic Tundra Vegetation Composition: Modeling Archive

This Modeling Archive is in support of a NGEE-Arctic publication: Riley et al. (2021) “Non-growing season plant nutrient uptake controls Arctic tundra vegetation composition under future climate” (Riley et al., 2021). The dataset contains “ecosys” model outputs reported in Riley et al. (2021) that examines the role of non-growing season (NGS) nutrient dynamics on 21st century vegetation composition. The study highlighted the importance of these nutrient dynamics on the emergent plant functional type distributions, focusing on their role in shrub expansion. The study showed that ignoring NGS nutrient dynamics led to a dramatic under-prediction of shrub expansion by year 2100, motivating the need to include these processes in Earth System Models. Included are modeled net primary production (NPP) and nitrogen (N) uptake for two scenarios: (1) baseline and (2) no NGS N uptake. The output is provided (1) at 25 km resolution across the North American tundra; (2) for years 2012 through 2100; and (3) PFT-specific. Dataset contains 20 NetCDF files in a zip file and one pdf.The Next-Generation Ecosystem Experiments: Arctic (NGEE Arctic), was a research effort to reduce uncertainty in Earth System Models by developing a predictive understanding of carbon-rich Arctic ecosystems and feedbacks to climate. NGEE Arctic was supported by the Department of Energy’s Office of Biological and Environmental Research. The NGEE Arctic project had two field research sites: 1) located within the Arctic polygonal tundra coastal region on the Barrow Environmental Observatory (BEO) and the North Slope near Utqiagvik (Barrow), Alaska and 2) multiple areas on the discontinuous permafrost region of the Seward Peninsula north of Nome, Alaska. Through observations, experiments, and synthesis with existing datasets, NGEE Arctic provided an enhanced knowledge base for multi-scale modeling and contributed to improved process representation at global pan-Arctic scales within the Department of Energy’s Earth system Model (the Energy Exascale Earth System Model, or E3SM), and specifically within the E3SM Land Model component (ELM).

54 ENVIRONMENTAL SCIENCES↗

DOE OSTI2022

Soil C stock and CO2 production data for Soong et al. 2021: Effects of five years of soil warming at Blodgett Forest, CA.

Subsoils below 20 cm are an important reservoir in the global carbon cycle, but little is known about their vulnerability under climate change. We measured subsoil carbon in warmed vs control plots of a conifer forest after 4.5 years of whole-soil warming (4°C). We also measured soil CO2 efflux at the surface and soil CO2 concentrations along the soil profile. Over the 4.5 years we observed that warming resulted in a loss of subsoil carbon stocks (−33 ± 11%), primarily from unprotected particulate organic matter. Warming also stimulated a sustained 30 ± 4% increase in soil CO2 efflux due to increased CO2 production through the whole-soil profile. The observed in situ decline in subsoil carbon stocks with warming is now definitive evidence of a positive soil carbon-climate feedback, which could not be concluded based on increases in CO2 effluxes alone. This dataset comprises (1) 13C and C recovery in 2014, 2016, and 2018 1m soil cores sampled in 10cm increments. (2) Monthly surface CO2 fluxes from 2014 to 2018. (3) Monthly gas well sample [CO2] and production data. And (4) density fraction data for three depths of cores recovered in 2017.

54 ENVIRONMENTAL SCIENCES↗

DOE OSTI2021

Identifying dominant environmental predictors of freshwater wetland methane fluxes across diurnal to seasonal time scales

While wetlands are the largest natural source of methane (CH 4 ) to the atmosphere, they represent a large source of uncertainty in the global CH 4 budget due to the complex biogeochemical controls on CH 4 dynamics. Here we present, to our knowledge, the first multi-site synthesis of how predictors of CH 4 fluxes (FCH4) in freshwater wetlands vary across wetland types at diel, multiday (synoptic), and seasonal time scales. In this work we used several statistical approaches (correlation analysis, generalized additive modeling, mutual information, and random forests) in a wavelet-based multi-resolution framework to assess the importance of environmental predictors, nonlinearities and lags on FCH4 across 23 eddy covariance sites. Seasonally, soil and air temperature were dominant predictors of FCH4 at sites with smaller seasonal variation in water table depth (WTD). In contrast, WTD was the dominant predictor for wetlands with smaller variations in temperature (e.g., seasonal tropical/subtropical wetlands). Changes in seasonal FCH4 lagged fluctuations in WTD by ~17 ± 11 days, and lagged air and soil temperature by median values of 8 ± 16 and 5 ± 15 days, respectively. Temperature and WTD were also dominant predictors at the multiday scale. Atmospheric pressure (PA) was another important multiday scale predictor for peat-dominated sites, with drops in PA coinciding with synchronous releases of CH 4 . At the diel scale, synchronous relationships with latent heat flux and vapor pressure deficit suggest that physical processes controlling evaporation and boundary layer mixing exert similar controls on CH 4 volatilization, and suggest the influence of pressurized ventilation in aerenchymatous vegetation. In addition, 1- to 4-h lagged relationships with ecosystem photosynthesis indicate recent carbon substrates, such as root exudates, may also control FCH4. By addressing issues of scale, asynchrony, and nonlinearity, this work improves understanding of the predictors and timing of wetland FCH4 that can inform future studies and models, and help constrain wetland CH 4 emissions.

59 BASIC BIOLOGICAL SCIENCES↗

DOE OSTI2021

Enhanced prediction of terrestrial feedbacks to the coastal carbon cycle:using machine learning to improve sub-grid biogeochemical processes

Focal Areas: The paper aims to improve predictability of the coastal carbon cycle through improved model representation and quantification of the terrestrial feedbacks to aquatic ecosystems. The paper covers two focus areas, 1. Improved predictive modeling of terrestrial and aquatic biogeochemistry through ML-enabled surrogate models, and 2. Employing machine learning to integrate multimodal data sets collected across terrestrial and aquatic ecosystems at high spatial and temporal resolution.

54 ENVIRONMENTAL SCIENCES↗

DOE OSTI2021

How AI Predicts the Untrained and Unseen

Focus Area: Model predictability improvements (Primary); Data optimization (secondary); Data complexity insights (secondary). The Scientific Challenge: If we believe that a future under extreme conditions will look very differently from today, we can likely agree that ML/AI models trained on past and present datasets will not be adequate to make reliable predictions into the future. This is true for water cycling, as well as biogeochemistry and other Earth system components and behaviors. Additionally, ML/AI models are inherently non-physical. Despite the flourishing success of ML/AI in many applications, such as computer vision, natural language process, and gaming, even the most sophisticated AI models don’t understand the very basic physical laws. Therefore, a natural question is: Can we trust ML/AI based predictions of Earth system behaviors that are fundamentally driven by physical laws? So, are physics models with meticulous process representation a better choice? Not exactly. Physical models, when firmly rooted in first principles, work great at predicting behaviors of systems with a well-defined set of boundary conditions and variables. However, as a complex system, the number of parameters and the degree of complexity and dynamics in processes, coupling, and scale dependent emergent behaviors make the Earth system behaviors very challenging to predict with physical models composed of deterministic laws. In addition, due to the lack of fundamental understandings, physical models often implement empirical correlations derived from observations with biases from locality of data generation. Because correlation is not necessarily causation or comply with first principles, scaling of model predictions beyond locality is often invalid. Beyond the limitation of models, physics or AI, our knowledge of the Earth system is limited by the lack of observational technologies and resources. Insufficient data density, dimensionality and diversity only offer a sliced (or projected) view of the Earth system, e.g. Plato’s Cave analogy, limiting our capability to better understand and represent fundamental processes in models.

54 ENVIRONMENTAL SCIENCES↗

DOE OSTI2021

Machine learning and artificial intelligence for wildfire prediction

Wildfire ignition, intensity, and spread rates are tightly linked with water cycle extremes. The science of wildfire prediction has traditionally encompassed the use of physical and empirical models to quantify the direction and speed of fire spread, plume injection and fire-aerosol impacts on atmospheric composition, predictions of fire season severity on subseasonal-to-seasonal (S2S) time scales, and assessment of the spatial and temporal patterns of fire risk across landscapes. Together with expanding observation networks, machine learning and artificial intelligence (AI) have the potential to revolutionize the application of such models for fire science, saving lives, protecting critical infrastructure, and providing more accurate estimates of wildfire-climate feedbacks.

54 ENVIRONMENTAL SCIENCES↗

DOE OSTI2021

Using machine learning and artificial intelligence to improve model-data integrated earth system model predictions of water and carbon cycle extremes

The research proposed here focuses on improving the predictive power of the land component of earth system models (ESMs) using (1) model-data fusion enabled by machine learning (ML) and artificial intelligence (AI), (2) predictive modeling through the combination of ML, AI, and big-data (comprising both model output and observations), and (3) insight of ESM structure and process mechanisms gleaned from complex data using ML and AI.

54 ENVIRONMENTAL SCIENCES↗

DOE OSTI2020

Alaskan carbon-climate feedbacks will be weaker than inferred from short-term manipulations: Alaskan Benchmark Data and Model runs

This submission aimed to assess differences in short-term step warming manipulations and long-term chronic response to climate change in Alaskan ecosystems. Briefly, climate warming is occurring fastest at high latitudes. Based on short-term field experiments, this warming is projected to stimulate soil organic matter decomposition, and promote a positive feedback to climate change. We show here that the tightly coupled, nonlinear nature of high-latitude ecosystems implies that short-term (< 10 year) warming experiments produce emergent ecosystem carbon stock temperature sensitivities inconsistent with emergent multi-decadal responses. We first demonstrate that a well-tested mechanistic ecosystem model accurately represents observed carbon cycle and active layer depth responses to short-term summer warming in four diverse Alaskan sites. We then show that short-term warming manipulations do not capture the non-linear, long-term dynamics of vegetation, and thereby soil organic matter, that occur in response to thermal, hydrological, and nutrient transformations belowground. Our results demonstrate significant spatial heterogeneity in multi-decadal Arctic carbon cycle trajectories and argue for more mechanistic models to improve predictive capabilities.The model used in the current study is available publicly (https://github.com/jinyun1tang/ECOSYS), and the current submission contains the python/ matlab codes for analyzing output from the model (includng a readme file to explain the codes). The benchmark data, also enclosed, was collected from a range of published and publicly available sources (extracted using GRABIT: https://www.mathworks.com/matlabcentral/fileexchange/7173-grabit). These sources describe warming induced changes in tundra/ boreal ecosystems.

54 ENVIRONMENTAL SCIENCES↗