Engineering topics

Serbin, Shawn

Publications and source records attributed to Serbin, Shawn.

At least 55 records · Page 3

DOE OSTI2022

Leaf demography spectra, February 2017, PA-SLZ: Panama

This dataset contains leaf reflectance spectra of sunlit canopy leaves from trees at the San Lorenzo Protected Area (PA-SLZ), Panama. Spectra were measured with a full-spectrum (350 -2500 nm) spectroradiometer with a leaf clip attachment. Leaves previously documented in a demography survey were targeted, and each leaf spectrum is paired with species identification, relative leaf position on each branch and estimated leaf age in days. Leaves were measured from the following species: Apeiba membranacea, Carapa guianensis, Guatteria dumetorum, Miconia borealis, Tachigali versicolor, Terminalia amazonia, Tocoyena pittieri and Vochysia ferruginea Unprocessed spectral data are included as SVC *.sig files, and metadata, including sample details, are presented in *.xlsx files. Leaf reflectance spectra of sunlit canopy leaves from trees at the San Lorenzo Protected Area (PA-SLZ), Panama. Spectra were measured with a full-spectrum (350 -2500 nm) spectroradiometer with a leaf clip attachment. Leaves previously documented in a demography survey were targeted, and each leaf spectrum is paired with species identification, relative leaf position on each branch and estimated leaf age in days. Leaves were measured from the following species: Apeiba membranacea, Carapa guianensis, Guatteria dumetorum, Miconia borealis, Tachigali versicolor, Terminalia amazonia, Tocoyena pittieri and Vochysia ferruginea Unprocessed spectral data are included as SVC *.sig files, and metadata, including sample details, are presented in *.xlsx files.

54 ENVIRONMENTAL SCIENCES↗

DOE OSTI2022

Leaf-to-canopy spectral reflectance, February 2018, PA-SLZ: Panama

Canopy reflectance spectra of 37 trees were measured at the Smithsonian Tropical Research Institute (STRI) San Lorenzo Protected Area site (PA-SLZ), utilising the canopy access crane to access fully sunlit leaves. Data were recorded in the middle of the day, with 20–50 measurements for each tree. The canopy structure for each crown was captured using a digital camera. Leaf-level reflectance and leaf demographic composition (age class) was recorded in detail for a > 0.5 meter branch sampled from each canopy tree (corresponding to the position where canopy spectra were measured). This dataset includes processed canopy and leaf-level spectral measurements (*.xlsx), raw spectral data (Spectral Evolution PSR+, *.raw, *.sed), sample details (*.xlsx) and *.pdf summaries containing low resolution photographs of the measured canopies. Full resolution images are available in the related dataset, "Leaf-to-canopy spectral reflectance photographs, February 2018, PA-SLZ: Panama".

54 ENVIRONMENTAL SCIENCES↗

DOE OSTI2022

Leaf C and N content, Feb2016-May2016, PA-SLZ, PA-PNM, PA-BCI: Panama

This dataset contains carbon, hydrogen and nitrogen content data of 33 tree species collected from February to May 2016 at the NGEE-Tropics Bosque Protector San Lorenzo (PA-SLZ) and Parque Natural Metropolitano (PA-PNM) sites in Panama. Data from Barro Colorado Island (PA-BCI) is only available for March 2016. This data was collected as part of the 2016 ENSO campaign. See related datasets for further sample details, leaf water potential, leaf spectra, gas exchange and leaf mass per area (LMA). Most leaves were sampled from sunlit canopy trees. VERSION 2 update. The identification of a species from the PNM site has been corrected as follows: the identification of the tree initially identified as Pseudosamanea guachapele (ALBIED) has been revised to Albizia adinocephala (ALBIAD). The updated data package includes revised data, metadata and protocol documents updated to reflect this change.

54 ENVIRONMENTAL SCIENCES↗

DOE OSTI2022

Pre-dawn leaf water potential, San Lorenzo, Panama, 2020

This data package contains predawn leaf water potential (LWP) data for leaves sampled in the San Lorenzo forest canopy crane site in Panama (PA-SLZ) from January to March 2020. Data were collected from 31 species, from top of canopy and vertical profiles within the canopy. All data and metadata are presented in .csv files. The protocol details are provided as *.pdf. See related data packages from the BNL 2020 field campaign for leaf optical properties and gas exchange measurements. Sample information including canopy elevation and leaf area index (LAI) can be found in the related “Leaf and canopy traits” data package.

54 ENVIRONMENTAL SCIENCES↗

DOE OSTI2022

Leaf gas exchange (BNL-PNNL collaboration), San Lorenzo, Panama, 2020

This data package contains Photosynthetic CO2 response (ACi curves) and Light Response (AQ) of mature sunlit canopy leaves of 11 species from PA-SLZ, February 2020. Branches were cut from the top of the canopy and re-cut under water. Fitted Vcmax and Jmax photosynthetic parameters were derived from measured data as well as the convexity, light use efficiency and apparent quantum yield. This data was collected as a collaboration between Brookhaven National Laboratory (BNL) and Pacific Northwest National Laboratory (PNNL), and is a subset of the 2020 BNL Panama campaign. The species included in this dataset are: Apeiba membranacea, Carapa guianensis, Cespedesia spathulate, Jacaranda copaia, Lonchocarpus heptaphyllus, Pera arboea, Pourouma bicolore, Symphonia globulifera, Tachigali versicolor, Tapirira guianensis, and Virola sebifera. The files included in this data package are in .csv and .pdf format, with two Excel files containing additional metadata.

54 ENVIRONMENTAL SCIENCES↗

DOE OSTI2022

Leaf C and N content by leaf age, Feb2017, PA-SLZ: Panama

This dataset contains carbon, hydrogen and nitrogen content measurements of sunlit canopy leaves of Apeiba membranacea (APEIME), Guatteria dumetorum (GUATDU), Miconia borealis (MICOBO), Terminalia amazonia (TERMAM), Virola multiflora (VIROSP) and Vochysia ferruginea (VOCHFE) species. Data was collected from the NGEE-Tropics Bosque Protector San Lorenzo (PA-SLZ) site in Panama in February of 2017 as part of the 2017 Brookhaven National Lab–Smithsonian Tropical Research Institute leaf traits by age campaign. A PDF with full sapling protocol is included in this dataset, along with metadata files in Excel file format. Data is in both CSV (Panama2017_CHN.csv) and Excel file formats. See related datasets for further sample details, leaf spectra, sap flow, leaf water potential, leaf mass per area (LMA), and gas exchange measurements.

54 ENVIRONMENTAL SCIENCES↗

DOE OSTI2022

G-LiHT Campaign Leaf Carbon and Nitrogen Content, Mar2017: Puerto Rico

Measurements of leaf carbon and nitrogen content collected from 68 tropical tree species. Data includes leaves collected from fully sunlit and shaded canopy strata as well as leaves for young, mature, old and senescent leaf ages. Data for each sample includes the relative age estimate, leaf canopy position and sample number. This data was collected as part of the 2017 NGEE-Tropics / NASA G-LiHT airborne campaign. This data package includes processed data for leaf carbon and nitrogen content (*.csv). Metadata files include data description (_dd.csv) for tabular data, site information (*.csv), sampling protocol (*.pdf) and the NGEE-Tropics FRAMES e-field log and file submission metadata (*.xlsx). See related datasets for sample details including photographs, leaf-level reflectance and transmittance spectra, leaf mass per area (LMA) and water content.

54 ENVIRONMENTAL SCIENCES↗

NASA NTRS2021

Surface Biology and Geology – A NASA Study for Future Hyperspectral and Thermal Satellites to Measure Climate Change Impacts

No abstract provided

Zareh, Shannon Kian↗

DOE OSTI2021

Spectral Fidelity of Earth's Terrestrial and Aquatic Ecosystems

The Surface Biology and Geology (SBG) investigation will create global maps of spectral surface reflectance and emissivity at a cadence of 16 days or better, with coverage to address global questions about Earth's geology, cryosphere and ecosystems. The revolutionary potential poses a commensurate challenge: creating contiguous maps free from regional biases induced by atmosphere, observation geometry, or inversion error. This will require an accurate calibration with precise knowledge of each channel's spectral response. In this work, we quantify the impact of spectral calibration on SBG's aquatic and terrestrial ecosystem objectives. We find that contemporary algorithms for ecosystem trait retrieval demand more accurate spectral calibration than historical missions. Errors due to drift or spatial nonuniformity in the wavelength calibration that have previously been considered acceptable can cause systematic errors larger than the instrument noise and of the same order as the variability SBG aims to measure. Moreover, their impact on atmospheric correction can induce climate-dependent systematic errors that thwart comparisons between ecosystems. These results underscore the importance of spectral response accuracy in SBG mission design.

54 ENVIRONMENTAL SCIENCES↗

DOE OSTI2021

Hydraulic architecture explains species moisture dependency but not mortality rates across a tropical rainfall gradient

Aim Intensified droughts are affecting tropical forests across the globe. However, the underlying mechanisms of tree drought response and mortality are poorly understood. Hydraulic traits and especially hydraulic safety margins (HSMs), i.e. the extent to which plants buffer themselves from thresholds of water stress, provide insights into species-specific drought vulnerability. Methods We investigated hydraulic traits during an intense drought triggered by the 2015-2016 El Niño on 27 canopy trees across three tropical forest sites with differing precipitation. We capitalized on the drought event as a time when plant water status might approach or exceed thresholds of water stress. We investigated the degree to which these traits varied across the rainfall gradient, as well as relationships amongst hydraulic traits and species-specific optimal moisture and mortality rates. Results There were no differences among sites for any measured trait. There was strong coordination among traits, with a network analysis revealing two major groups of coordinated traits. In one group there were water potentials, turgor loss point, sapwood capacitance and density, HSMs, and mortality rate. In the second group there was leaf mass per area, leaf dry matter content, hydraulic architecture (leaf area to sapwood area ratio), and species-specific optimal moisture. Conclusion These results demonstrated that while species with greater safety from turgor loss had lower mortality rates, hydraulic architecture was the only trait that explained species’ moisture dependency. Species with a greater leaf area to sapwood area ratio were associated with drier sites and reduced their transpirational demand during the dry season via deciduousness.

Hydraulic Saftey Margins, drought, tropical forest↗

DOE OSTI2021

AI-Constrained Bottom-Up Ecohydrology and Improved Prediction of Seasonal, Interannual, and Decadal Flood and Drought Risks

Focal Areas: (2) Predictive modeling through the use of AI techniques and AI-derived model components; the use of AI and other tools to design a prediction system composed of a hierarchy of models (3)Insight gleaned from complex data (both observed & simulated) using AI, big data analytics, and other advanced methods, including explainable AI and physics- or knowledge-guided AI

54 ENVIRONMENTAL SCIENCES↗

DOE OSTI2021

NGEE Arctic, Canopy Spectral Reflectance, Utqiagvik (Barrow), Alaska, 2014-2016

Measurements of full-spectrum (i.e. 350-2500 nm) canopy spectral reflectance of Arctic plant species within the BEO, Barrow, Alaska. Spectra were collected using Spectra Vista Corporation (SVC) HR-2014i and Spectral Evolution (SE) PSR+ instruments mounted on a tripod or monopod together with a Spectralon white plate to calibrate each measurement under variable illumination conditions. Data were collected in Utqiagvik (Barrow), Alaska during the 2014 to 2016 period. Data package includes processed spectra (*.csv) files and original instrument output and processing files (*.zip).The Next-Generation Ecosystem Experiments: Arctic (NGEE Arctic), was a 10-year research effort (2012-2022) to reduce uncertainty in Earth System Models by developing a predictive understanding of carbon-rich Arctic ecosystems and feedbacks to climate. NGEE Arctic was supported by the Department of Energy's Office of Biological and Environmental Research. The NGEE Arctic project had two field research sites: 1) located within the Arctic polygonal tundra coastal region on the Barrow Environmental Observatory (BEO) and the North Slope near Utqiagvik (Barrow), Alaska and 2) multiple areas on the discontinuous permafrost region of the Seward Peninsula north of Nome, Alaska. Through observations, experiments, and synthesis with existing datasets, NGEE Arctic provided an enhanced knowledge base for multi-scale modeling and contributed to improved process representation at global pan-Arctic scales within the Department of Energy's Earth system Model (the Energy Exascale Earth System Model, or E3SM), and specifically within the E3SM Land Model component (ELM).

54 ENVIRONMENTAL SCIENCES↗

DOE OSTI2021

Panama tropical forest digital camera imagery for vegetation phenology, Dec2016-May2019, PA-SLZ, PA-PNM, PA-BCI

Tropical forest phenology monitoring undertaken by use of Wingscapes timelapse cameras (phenocams) at three tropical evergreen forests in Panama: San Lorenzo, Parque Natural Metropolitano, and Barro Colorado Island. Following installation in December 2016, images were acquired every 10 minutes from 10 am to 2 pm daily, ending in May 2019. A total of 37 cameras were mounted on towers and tree branches, and view sunlit canopy or understory forest as follows: PA-SLZ, 11 canopy, 14 understory; PA-PNM, 6 canopy, 2 understory, PA-BCI, 4 canopy (trees also monitored for sap flow). This data package contains a full data description, metadata, species identification guides and summary files showing example fields of view from each camera location as csv and pdf files. The data description provides instructions for download of the full resolution image files, and other summary data products stored on external servers.

54 ENVIRONMENTAL SCIENCES↗

DOE OSTI2021

Leaf spectral reflectance and transmittance, San Lorenzo, Panama, 2020

This data package contains full-range (350 – 2500 nm) leaf reflectance and transmittance spectra of leaves collected at the San Lorenzo forest canopy crane site in Panama (PA-SLZ) from January to March 2020. Around 1000 leaves were measured from 50 species and various leaf phenological stages. Leaves were sampled from both the top of the canopy and multiple heights within the canopy from 10 vertical profiles and for six core species, from the top of the canopy. This data package includes processed leaf spectra (*.csv), and raw data from the spectroradiometer (compressed as .zip). Metadata files include data descriptions (_dd.csv) for tabular data and sample information and a description of the field campaign protocol (PA-SLZ_2020_Protocol.pdf). In addition to the leaf spectral measurements included here, these samples were also used for measurement of leaf gas exchange, carbon and nitrogen content and leaf mass per unit leaf area (LMA) contained in related data packages.

54 ENVIRONMENTAL SCIENCES↗

DOE OSTI2021

Leaf gas exchange and fitted parameters, San Lorenzo, Panama, 2020

This data package contains photosynthetic CO2 response curves (ACi curves), light response curves (AQ curves), dark adapted dark respiration, conductance curves, and survey measurements for leaves measured at the San Lorenzo forest canopy crane site, Panama (PA-SLZ) from January to March 2020. Leaves were sampled from both the top of the canopy and multiple heights within the canopy from 10 vertical profiles and included around 50 species. In addition, six core species were also measured, from the top of the canopy. Fitted maximum carboxylation rate (Vcmax), maximum electron transport rate (Jmax), and triose phosphate utilization rate (TPU) were derived from measured data as well as the convexity, light use efficiency, apparent quantum yield, and Rdark. The measurements can also be used to derive the conductance parameters g0 and g1 of stomatal model. All the gas exchange data and metadata are presented in .csv files and complete instrument output are included in .zip folders. Data and metadata meet the ESS-DIVE leaf-level gas exchange reporting format requirements. The protocol details are provided as pdf documents. In addition to gas exchange data described here these samples were also used for measurement of leaf optical properties, carbon and nitrogen content, and leaf mass per unit leaf area (LMA) these data can be cross linked using the unique sample ID and are provided in separate related data packages. Sample information including canopy elevation and leaf area index (LAI) can be found in the related “Leaf and canopy traits” data package.

54 ENVIRONMENTAL SCIENCES↗

DOE OSTI2021

G-LiHT Campaign Leaf Sample details & photos, March 2017: Puerto Rico

This data package includes details of leaves sampled for leaf spectra and chemistry from 5 sites in Puerto Rico, in March of 2017. Sunlit canopy and shaded leaves of 66 species were collected. Data for each sample includes species, leaf age, type of analysis (spectroscopy, gas exchange, chemistry), sample number and sample photographs. The data package includes a spreadsheet with sample information and a zip file of photographs (1.6 GB). This data was collected as part of the 2017 BNL–G-LiHT leaf spectra campaign. See related datasets for leaf spectral reflectance and transmittance, leaf mass area (LMA), and leaf chemistry. Note that leaf sample details are also included in related datasets.

54 ENVIRONMENTAL SCIENCES↗

DOE OSTI2021

G-LiHT Campaign Leaf Carbon and Nitrogen Content, Mar2017: Puerto Rico

54 ENVIRONMENTAL SCIENCES↗

DOE OSTI2020

Leaf Area Index (LAI) of vegetation at the Teller site, Seward Peninsula, Alaska, 2017

Measurements of leaf area index (LAI) at 299 locations on the "tall shrub transect" at the NGEE Arctic Teller field site. Measurements were made on 2017-07-27 using a LiCor LAI-2200. The dataset includes 9 files as dGPS locations, raw measurements, processed data and R script used for processing. The Next-Generation Ecosystem Experiments: Arctic (NGEE Arctic), was a research effort to reduce uncertainty in Earth System Models by developing a predictive understanding of carbon-rich Arctic ecosystems and feedbacks to climate. NGEE Arctic was supported by the Department of Energy's Office of Biological and Environmental Research.The NGEE Arctic project had two field research sites: 1) located within the Arctic polygonal tundra coastal region on the Barrow Environmental Observatory (BEO) and the North Slope near Utqiagvik (Barrow), Alaska and 2) multiple areas on the discontinuous permafrost region of the Seward Peninsula north of Nome, Alaska.Through observations, experiments, and synthesis with existing datasets, NGEE Arctic provided an enhanced knowledge base for multi-scale modeling and contributed to improved process representation at global pan-Arctic scales within the Department of Energy's Earth system Model (the Energy Exascale Earth System Model, or E3SM), and specifically within the E3SM Land Model component (ELM).

54 ENVIRONMENTAL SCIENCES↗