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Shibata, K.

Publications and source records attributed to Shibata, K..

A General Relativistic Magnetohydrodynamic Simulation of Jet Formation

We have performed a fully three-dimensional general relativistic magnetohydrodynamic (GRMHD) simulation ofjet formation from a thin accretion disk around a Schwarzschild black hole with a free-falling corona. The initial simulation results show that a bipolar jet (velocity approx.0.3c) is created, as shown by previous two-dimensional axi- symmetric simulations with mirror symmetry at the equator. The three-dimensional simulation ran over 100 light crossing time units (T(sub s) = r(sub s)/c, where r(sub s = 2GM/c(sup 2), which is considerably longer than the previous simulations. We show that the jet is initially formed as predicted owing in part to magnetic pressure from the twisting of the initially uniform magnetic field and from gas pressure associated with shock formation in the region around r = 3r(sub s). At later times, the accretion disk becomes thick and the jet fades resulting in a wind that is ejected from the surface ofthe thickened (torus-like) disk. It should be noted that no streaming matter from a donor is included at the outer boundary in the simulation (an isolated black hole not binary black hole). The wind flows outward with a wider angle than the initial jet. The widening of the jet is consistent with the outward-moving torsional Alfven waves. This evolution of disk-jet coupling suggests that the jet fades with a thickened accretion disk because of the iack of streaming materiai from an accompanying star.

Nishikawa, K.-I.↗

A General Relativistic Magnetohydrodynamics Simulation of Jet Formation with a State Transition

We have performed the first fully three-dimensional general relativistic magnetohydrodynamic (GRMHD) simulation of jet formation from a thin accretion disk around a Schwarzschild black hole with a free-falling corona. The initial simulation results show that a bipolar jet (velocity sim 0.3c) is created as shown by previous two-dimensional axisymmetric simulations with mirror symmetry at the equator. The 3-D simulation ran over one hundred light-crossing time units which is considerably longer than the previous simulations. We show that the jet is initially formed as predicted due in part to magnetic pressure from the twisting the initially uniform magnetic field and from gas pressure associated with shock formation. At later times, the accretion disk becomes thick and the jet fades resulting in a wind that is ejected from the surface of the thickened (torus-like) disk. It should be noted that no streaming matter from a donor is included at the outer boundary in the simulation (an isolated black hole not binary black hole). The wind flows outwards with a wider angle than the initial jet. The widening of the jet is consistent with the outward moving shock wave. This evolution of jet-disk coupling suggests that the low/hard state of the jet system may switch to the high/soft state with a wind, as the accretion rate diminishes.

Nishikawa, K. I.↗

The Formation of Relativistic Jets from Kerr Black Holes

We have performed the first fully three-dimensional general relativistic magnetohydrodynamics (GRMHD) simulation for Schwarzschild and Kerr black holes with a free falling corona and thin accretion disk. The initial simulation results with a Schwarzschild metric show that a jet is created as in the previous axisymmetric simulations with mirror symmetry at the equator. However, the time to form the jet is slightly longer than in the 2-D axisymmetric simulation. We expect that the dynamics of jet formation are modified due to the additional freedom in the azimuth dimension without axisymmetry with respect to the Z axis and reflection symmetry respect to the equatorial plane. The jet which is initially formed due to the twisted magnetic fields and shocks becomes a wind at the later time. The wind flows out with a much wider angle than the initial jet. The twisted magnetic fields at the earlier time were untwisted and less pinched. The accretion disk became thicker than the initial condition. Further simulations with initial perturbations will provide insights for accretion dynamics with instabilities such as magneto-rotational instability (MRI) and accretion-eject instability (AEI). These instabilities may contribute to variabilities observed in microquasars and AGN jets.

Nishikawa, K.-I.↗

Tropical Cumulus Convection and Upward Propagating Waves in Middle Atmospheric GCMs

It is recognized that the resolved tropical wave spectrum can vary considerably between general circulation models (GCMs) and that these differences can have an important impact on the simulated climate. A comprehensive comparison of the waves is presented for the December-January-February period using high-frequency (three-hourly) data archives from eight GCMs and one simple model participating in the GCM Reality Intercomparison Project for SPARC (GRIPS). Quantitative measures of the structure and causes of the wavenumber-frequency structure of resolved waves and their impacts on the climate are given. Space-time spectral analysis reveals that the wave spectrum throughout the middle atmosphere is linked to variability of convective precipitation, which is determined by the parameterized convection. The variability of the precipitation spectrum differs by more than an order of magnitude between the models, with additional changes in the spectral distribution (especially the frequency). These differences can be explained primarily by the choice of different, cumulus par amet erizations: quasi-equilibrium mass-flux schemes tend to produce small variability, while the moist-convective adjustment scheme is most active. Comparison with observational estimates of precipitation variability suggests that the model values are scattered around the truth. This result indicates that a significant portion of the forcing of the equatorial quasi-biennial oscillation (QBO) is provided by waves with scales that are not resolved in present-day GCMs, since only the moist convective adjustment scheme (which has the largest transient variability) can force a QBO in models that have no parameterization of non-stationary gravity waves. Parameterized cumulus convection also impacts the nonmigrating tides in the equatorial region. In most of the models, momentum transport by diurnal nonmigrating tides in the mesosphere is larger than that by Kelvin waves, being more significant than has been thought. It is shown that the equatorial semi-annual oscillation in the models examined is driven mainly by gravity waves with periods shorter than three days, with at least some contribution from parameterized gravity waves; the contribution from the ultra-fast zonal wavenumber-1 Kelvin waves is negligible.

Horinouchi, T.↗

Structure of the coding region and mRNA variants of the apyrase gene from pea (Pisum sativum)

Partial amino acid sequences of a 49 kDa apyrase (ATP diphosphohydrolase, EC 3.6.1.5) from the cytoskeletal fraction of etiolated pea stems were used to derive oligonucleotide DNA primers to generate a cDNA fragment of pea apyrase mRNA by RT-PCR and these primers were used to screen a pea stem cDNA library. Two almost identical cDNAs differing in just 6 nucleotides within the coding regions were found, and these cDNA sequences were used to clone genomic fragments by PCR. Two nearly identical gene fragments containing 8 exons and 7 introns were obtained. One of them (H-type) encoded the mRNA sequence described by Hsieh et al. (1996) (DDBJ/EMBL/GenBank Z32743), while the other (S-type) differed by the same 6 nucleotides as the mRNAs, suggesting that these genes may be alleles. The six nucleotide differences between these two alleles were found solely in the first exon, and these mutation sites had two types of consensus sequences. These mRNAs were found with varying lengths of 3' untranslated regions (3'-UTR). There are some similarities between the 3'-UTR of these mRNAs and those of actin and actin binding proteins in plants. The putative roles of the 3'-UTR and alternative polyadenylation sites are discussed in relation to their possible role in targeting the mRNAs to different subcellular compartments.

NASA Discipline Plant Biology↗

Emerging flux and flares in NOAA 7260

We have studied the relation between flux emergence and flare activity in the active region NOAA 7260, using images from the Soft X-ray Telescope (SXT) aboard the Yohkoh spacecraft and other supporting ground-based data. It is found that microflares start around the time of flux emergence as recorded in white-light data, which generally precedes a major flare by several hours. We interpret the microflares as due to fast reconnection that takes place intermittently in the slow reconnection stage while more energy is accumulated in preparation for a larger flare.

Nitta, N.↗

A gigantic coronal jet ejected from a compact active region in a coronal hole

A gigantic coronal jet greater than 3 x 10(exp 5) km long (nearly half the solar radius) has been found with the soft X-ray telescope (SXT) on board the solar X-ray satellite, Yohkoh. The jet was ejected on 1992 January 11 from an 'anemone-type' active region (AR) appearing in a coronal hole and is one of the largest coronal X-ray jets observed so far by SXT. This gigantic jet is the best observed example of many other smaller X-ray jets, because the spatial structures of both the jet and the AR located at its base are more easily resolved. The range of apparent translational velocities of the bulk of the jet was between 90 and 240 km s(exp -1), with the corresponding kinetic energy estimated to be of order of 10(exp 28) ergs. A detailed analysis reveals that the jet was associated with a loop brightening (a small flare) that occurred in the active region. Several features of this observation suggest and are consistent with a magnetic reconnection mechanism for the production of such a 'jet-loop-brightening' event.

Shibata, K.↗

Three-dimensional magnetohydrodynamics of the emerging magnetic flux in the solar atmosphere

The nonlinear evolution of an emerging magnetic flux tube or sheet in the solar atmosphere is studied through 3D MHD simulations. In the initial state, a horizontal magnetic flux sheet or tube is assumed to be embedded at the bottom of MHD two isothermal gas layers, which approximate the solar photosphere/chromosphere and the corona. The magnetic flux sheet or tube is unstable against the undular mode of the magnetic buoyancy instability. The magnetic loop rises due to the linear and then later nonlinear instabilities caused by the buoyancy enhanced by precipitating the gas along magnetic field lines. We find by 3D simulation that during the ascendance of loops the bundle of flux tubes or even the flux sheet develops into dense gas filaments pinched between magnetic loops. The interchange modes help produce a fine fiber flux structure perpendicular to the magnetic field direction in the linear stage, while the undular modes determine the overall buoyant loop structure. The expansion of such a bundle of magnetic loops follows the self-similar behavior observed in 2D cases studied earlier. Our study finds the threshold flux for arch filament system (AFS) formation to be about 0.3 x 10 exp 20 Mx.

Matsumoto, R.↗

Self-similar evolution of the nonlinear magnetic buoyancy instability

A new type of self-similar solution of ideal magnetohydrodynamics (MHD) in the nonlinear stage of the undular model (k parallel to B) of the magnetic buoyancy instability (the ballooning instability in fusion plasma physics or the Parker instability in astrophysics) is found through MHD simulation and theory. The linear theory developed agrees well with the simulation in the early (linear) stage. The nonlinear stages of the instability in the simulation show the self-similar evolution. One of the solutions obtained from the nonlinear analysis has the characteristics of nonlinear instability in Lagrangian coordinates; the fluid velocity and the Alfven speed on each magnetic loop increase exponentially with time, because the loop is evacuated by the field-aligned motion of matter resulting from gravitational acceleration. In the later stage of the nonlinear evolution, the solution property changes from exponential to power-law time dependence. The latter corresponds to a force-free expansion solution. The later saturation of the velocity increment is also discussed.

Shibata, K.↗

Two-dimensional magnetohydrodynamic model of emerging magnetic flux in the solar atmosphere

The nonlinear undular mode of the magnetic buoyancy instability in an isolated horizontal magnetic flux embedded in a two-temperature layered atmosphere (solar corona-chromosphere/photosphere) is investigated using a two-dimensional magnetohydrodynamic code. The results show that the flux sheet with beta of about 1 is initially located at the bottom of the photosphere, and that the gas slides down the expanding loop as the instability develops, with the evacuated loop rising as a result of enhanced magnetic buoyancy. The expansion of the magnetic loop in the nonlinear regime displays self-similar behavior. The rise velocity of the magnetic loop in the high chromosphere (10-15 km/s) and the velocity of downflow noted along the loop (30-50 km/s) are consistent with observed values for arch filament systems.

Shibata, K.↗

Nonlinear Parker instability of isolated magnetic flux in a plasma

The nonlinear evolution of the Parker instability in an isolated horizontal magnetic-flux sheet embedded in a two-temperature layer atmosphere is studied by using a two-dimensional MHD code. In the solar case, this two-layer model is regarded as a simplified abstraction of the sun's photosphere/chromosphere and its overlying much hotter (coronal) envelope. The horizontal flux sheet is initially located in the lower temperature atmosphere so as to satisfy magnetostatic equilibrium under a constant gravitational acceleration. Ideal MHD is assumed, and only perturbations with k parallel to the magnetic-field lines are investigated. As the instability develops, the gas slides down the expanding loop, and the evacuated loop rises as a result of enhanced magnetic buoyancy. In the nonlinear regime of the instability, both the rise velocity of a magnetic loop and the local Alfven velocity at the top of the loop increase linearly with height and show self-similar behavior with height as long as the wavelength of the initial perturbation is much smaller than the horizontal size of the computing domain.

Shibata, K.↗

Bipolar Flows and X-ray Emission from Young Stellar Object

Production of both the large scale CO bipolar flows and the small scale optical bipolar jets from the star-forming regions is given interpretation in terms of a magnetic mechanism related to accretion model. It is shown by an axisymmetric 2.5-dimensional simulation that the large scale cold bipolar flow may be produced in the relaxation of the magnetic twist which is created by the rotational winding-up of the magnetic field in the contracting disk. In contrast, the small scale warm bipolar jets may be driven by the recoiling shocks which are produced in the crash at the stellar surface of the infalling material released from the inner edge of the disk through magnetic reconnections.

Uchida, Y.↗