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Smith, Brian

Publications and source records attributed to Smith, Brian.

At least 19 records

Revealing the mechanism of action of a first-in-class covalent inhibitor of $\mathrm{KRASG12C}$ $\mathrm{(ON)}$ and other functional properties of oncogenic $\text{KRAS}$ by 31 P $\mathrm{NMR}$

Individual oncogenic KRAS mutants confer distinct differences in biochemical properties and signaling for reasons that are not well understood. KRAS activity is closely coupled to protein dynamics and is regulated through two interconverting conformations: state 1 (inactive, effector binding deficient) and state 2 (active, effector binding enabled). Here, we use 31 P NMR to delineate the differences in state 1 and state 2 populations present in WT and common KRAS oncogenic mutants (G12C, G12D, G12V, G13D, and Q61L) bound to its natural substrate GTP or a commonly used nonhydrolyzable analog GppNHp (guanosine-5'-[(β,γ)-imido] triphosphate). Our results show that GppNHp-bound proteins exhibit significant state 1 population, whereas GTP-bound KRAS is primarily (90% or more) in state 2 conformation. This observation suggests that the predominance of state 1 shown here and in other studies is related to GppNHp and is most likely nonexistent in cells. We characterize the impact of this differential conformational equilibrium of oncogenic KRAS on RAF1 kinase effector RAS-binding domain and intrinsic hydrolysis. Through a KRAS G12C drug discovery, we have identified a novel small-molecule inhibitor, BBO-8956, which is effective against both GDP- and GTP-bound KRAS G12C. We show that binding of this inhibitor significantly perturbs state 1–state 2 equilibrium and induces an inactive state 1 conformation in GTP-bound KRAS G12C. In the presence of BBO-8956, RAF1–RAS-binding domain is unable to induce a signaling competent state 2 conformation within the ternary complex, demonstrating the mechanism of action for this novel and active-conformation inhibitor.

31P NMR↗

A Cyber-Resilience Risk Management Architecture for Distributed Wind

Distributed wind is an electric energy resource segment with strong potential to be deployed in many applications, but special consideration of resilience and cybersecurity is needed to address the unique conditions associated with distributed wind. Distributed wind is a strong candidate to help meet renewable energy and carbon-free energy goals. However, care must be taken as more systems are installed to ensure that the systems are reliable, resilient, and secure. The physical and communications requirements for distributed wind mean that there are unique cybersecurity considerations, but there is little to no existing guidance on best practices for cybersecurity risk management for distributed wind systems specifically. This research develops an architecture for the consideration of cyber risks associated with distributed wind systems. The architecture takes into account the configurations, challenges, and standards for distributed wind to create a risk-focused perspective that considers of threats, vulnerabilities, and consequences, with special emphasis on what sets distributed wind systems apart from other distributed energy resources (DER). We discuss common distributed wind architectures and how they are interconnected to larger power systems. Because cybersecurity cannot exist independently, the cyber-resilience architecture must consider the system holistically. Finally, we discuss the implementation of a risk assessment process that uses the cyber-resilience framework to address challenges specific to distributed wind.

17 WIND ENERGY↗

Cybersecurity Guide for Distributed Wind

Distributed wind sits at the intersection of grid-connected, off-grid and behind-the-meter cyber-physical electrical energy systems. The unique physical properties and communications requirements for distributed wind systems mean that there are unique cybersecurity considerations, but there is little to no existing guidance on best practices for cybersecurity. This document is intended to be a starting point for distributed wind stakeholders including manufacturers, installers and integrators, and operators (facility, aggregator, or utility). We discuss common distributed wind architectures and describe their role in the larger power system, pointing out some of the key connections to be aware of. Cybersecurity cannot exist in a vacuum, but rather must consider all the system and all its connections holistically. The role of distributed wind and the functions it can serve are described to gain understanding of the full range of capabilities. The purpose and application of relevant standards that may apply to certain distributed wind systems is presented. These standards may not apply to all installations, but even for systems that are not required to meet these standards they can be a good reference for best practices. A holistic threat perspective is used to describe the adversaries, threats, and potential impacts of cyberattacks, with special emphasis on what sets distributed wind systems apart from other distributed energy resources (DER). Finally, we present the recommendations for cybersecurity, both in terms of needs of the system and roles that specific stakeholders should fulfill. Distributed wind systems can come in a variety of architectures and applications, so there is no one-size-fits-all approach to cybersecurity. However, this document contains the relevant information for stakeholders to identify the cybersecurity needs of their system, refer to relevant standards, and apply best practices in a manner most consistent with their security and operational goals.

17 WIND ENERGY↗

An evaluation of the CORAL interconnects

The US Department of Energy deployed the Summit and Sierra supercomputers with the latest state-of-the-art network interconnect technology in 2018 and both systems entered production in 2019. In this paper, we provide an in-depth assessment of the systems' network interconnects that are based on Enhanced Data Rate (EDR) 100 Gb/s Mellanox InfiniBand. Both systems use second-generation EDR Host Channel Adapters (HCAs) and switches with several new features such as Adaptive Routing (AR), switch-based collectives, and HCA-based tag matching. Although based on the same components, Summit's network is "non-blocking" (i.e., a fully provisioned Clos network) and Sierra's network has a 2:1 taper between the racks and aggregation switches. We evaluate the two systems' interconnects using traditional communication benchmarks as well as production applications. We find that the new Adaptive Routing dramatically improves performance but the other new features still need improvement.

Zimmer, Christopher↗

Momentum-resolved resonant inelastic soft X-ray scattering (qRIXS) endstation at the ALS

A momentum resolved resonant inelastic X-ray scattering (qRIXS) experimental station with continuously rotatable spectrometers and parallel detection is designed to operate at different beamlines at synchrotron and free electron laser (FEL) facilities. This endstation, currently located at the Advanced Light Source (ALS), has five emission ports on the experimental chamber for mounting the high-throughput modular soft X-ray spectrometers (MXS). Coupled to the rotation from the supporting hexapod, the scattered X-rays from 27.5° (forward scattering) to 152.5° (backward scattering) relative to the incident photon beam can be recorded, enabling the momentum-resolved RIXS spectroscopy. The components of this endstation are described in details, and the preliminary RIXS measurements on highly oriented pyrolytic graphite (HOPG) reveal the low energy vibronic excitations from the strong electron-phonon coupling at C K edge around σ* band. Lastly, the grating upgrade option to enhance the performance at low photon energies is presented and the potential of this spectroscopy is discussed in summary.

36 MATERIALS SCIENCE↗

Nailing the Peak: City-Scale, Building-Specific Load Factor and Contribution to a Utility’s Hour of Critical Generation

Maintaining electrical generation assets to meet peak demand increases the cost of providing electricity to a country’s buildings and insufficient assets can result in power outages. In order to keep reliable electricity costs low for consumers and demand charges low for utilities, there exist markets and financial incentives for limiting consumption during peak demand.The team has partnered with an electrical distributor servicing a 1,390 km2 area and 178,368 buildings with the aim of using urban-scale building energy modelling to inform business decisions necessary for the operation of their electric grid. A suite of software has been developed that allows the scalable creation of a “digital twin” for all buildings in the utility’s service area. This virtual utility area is analysed for targeted deployment of new technologies or policies to assess building-specific savings, effects on critically-loaded grid infrastructure (e.g. feeders, substations), and aggregated impact to utility-scale operations.This work leverages 15-minute data from each building to compare actual and simulated monthly peak-hour demand and assessment of the load factor for each building. Findings include market characterization via clustering of relative energy use profiles for ~180,000 buildings as well as simulation-informed savings opportunities indicating residential load factors of 0.17, commercial load factors of 0.2-0.4 depending on year of construction, and general load factors of 0.16-0.5 depending on building type.

New, Joshua↗

Discovery of common chemical exposures across three continents using silicone wristbands

To assess personal chemical exposure, volunteers from 14 communities in Africa (Senegal, South Africa), North America (U.S), and South America (Peru) wore 262 silicone wristbands. We analyzed wristband extracts for 1,530 unique chemicals, resulting in 400,860 chemical data points. The number of chemical detections ranged from 4 to 43 per wristband, with 191 different chemicals detected, and 1,339 chemicals not detected in any wristband. No two wristbands had the same chemical detections. We detected 13 potential endocrine disruptor chemicals in over 50% of wristbands, and found 36 chemicals in common between chemicals detected in three geographic wristband groups (Africa, North America, and South America). Children =11 years old in the U.S. had the highest percentage of flame retardant detections compared to all other participants. Wristbands worn in Texas post-Hurricane Harvey had the highest mean number of chemical detections compared to other study locations. Consumer product-related chemicals and phthalates were a high percentage of chemical detections across all study locations (36-53% and 18-42%, respectively). Chemical exposures varied among individuals; however, many individuals were exposed to the same chemical mixtures. Our exploratory investigation uncovered personal chemical exposure trends that can help prioritize certain mixtures and chemical classes for future studies.

63 RADIATION, THERMAL, AND OTHER ENVIRON. POLLUTAN↗

High-efficiency in situ resonant inelastic x-ray scattering (iRIXS) endstation at the Advanced Light Source

In this paper, an endstation with two high-efficiency soft x-ray spectrographs was developed at Beamline 8.0.1 of the Advanced Light Source, Lawrence Berkeley National Laboratory. The endstation is capable of performing soft x-ray absorption spectroscopy, emission spectroscopy, and, in particular, resonant inelastic soft x-ray scattering (RIXS). Two slit-less variable line-spacing grating spectrographs are installed at different detection geometries. The endstation covers the photon energy range from 80 to 1500 eV. For studying transition-metal oxides, the large detection energy window allows a simultaneous collection of x-ray emission spectra with energies ranging from the O K-edge to the Ni L-edge without moving any mechanical components. The record-high efficiency enables the recording of comprehensive two-dimensional RIXS maps with good statistics within a short acquisition time. By virtue of the large energy window and high throughput of the spectrographs, partial fluorescence yield and inverse partial fluorescence yield signals could be obtained for all transition metal L-edges including Mn. Finally and moreover, the different geometries of these two spectrographs (parallel and perpendicular to the horizontal polarization of the beamline) provide contrasts in RIXS features with two different momentum transfers.

47 OTHER INSTRUMENTATION↗

Multi-petascale highly efficient parallel supercomputer

A Multi-Petascale Highly Efficient Parallel Supercomputer of 100 petaOPS-scale computing, at decreased cost, power and footprint, and that allows for a maximum packaging density of processing nodes from an interconnect point of view. The Supercomputer exploits technological advances in VLSI that enables a computing model where many processors can be integrated into a single Application Specific Integrated Circuit (ASIC). Each ASIC computing node comprises a system-on-chip ASIC utilizing four or more processors integrated into one die, with each having full access to all system resources and enabling adaptive partitioning of the processors to functions such as compute or messaging I/O on an application by application basis, and preferably, enable adaptive partitioning of functions in accordance with various algorithmic phases within an application, or if I/O or other processors are underutilized, then can participate in computation or communication nodes are interconnected by a five dimensional torus network with DMA that optimally maximize the throughput of packet communications between nodes and minimize latency.

32 ENERGY CONSERVATION, CONSUMPTION, AND UTILIZATI↗

Ultrascale Visualization of Climate Data

Fueled by exponential increases in the computational and storage capabilities of high-performance computing platforms, climate simulations are evolving toward higher numerical fidelity, complexity, volume, and dimensionality. These technological breakthroughs are coming at a time of exponential growth in climate data, with estimates of hundreds of exabytes by 2020. To meet the challenges and exploit the opportunities that such explosive growth affords, a consortium of four national laboratories, two universities, a government agency, and two private companies formed to explore the next wave in climate science. Working in close collaboration with domain experts, the Ultrascale Visualization Climate Data Analysis Tools (UV-CDAT) project aims to provide high-level solutions to a variety of climate data analysis and visualization problems.

analysis tools↗

JUNO Photovoltaic Power at Jupiter

This paper summarizes the Juno modeling team work on predicting the Juno solar array performance at critical mission points including Juno Orbit Insertion (JOI) and End of Mission (EOM). This report consists of background on Juno solar array design, a summary of power estimates, an explanation of the modeling approach used by Aerospace, a detailed discussion of loss factors and performance predictions, a thermal analysis, and a review of risks to solar array performance

solar powered mission↗

HSR High Lift Program and PCD2 Update

The mission of High-Lift Technology is to develop technology allowing the design of practical high lift concepts for the High-Speed Civil Transport (HSCT) in order to: 1) operate safely and efficiently; and 2) reduce terminal control area and community noise. In fulfilling this mission, close and continuous coordination will be maintained with other High-Speed Research (HSR) technology elements in order to support optimization of the overall airplane (rather than just the high lift system).

Kemmerly, Guy T.↗

Potential markets for advanced satellite communications

This report identifies trends in the volume and type of traffic offered to the U.S. domestic communications infrastructure and extrapolates these trends through the year 2011. To describe how telecommunications service providers are adapting to the identified trends, this report assesses the status, plans, and capacity of the domestic communications infrastructure. Cable, satellite, and radio components of the infrastructure are examined separately. The report also assesses the following major applications making use of the infrastructure: (1) Broadband services, including Broadband Integrated Services Digital Network (BISDN), Switched Multimegabit Data Service (SMDS), and frame relay; (2) mobile services, including voice, location, and paging; (3) Very Small Aperture Terminals (VSAT), including mesh VSAT; and (4) Direct Broadcast Satellite (DBS) for audio and video. The report associates satellite implementation of specific applications with market segments appropriate to their features and capabilities. The volume and dollar value of these market segments are estimated. For the satellite applications able to address the needs of significant market segments, the report also examines the potential of each satellite-based application to capture business from alternative technologies.

Adamson, Steven↗