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Sun, Ning

Publications and source records attributed to Sun, Ning.

At least 55 records · Page 3
All sourcesNASA NTRSDOE OSTI
DOE OSTI2022

Advanced one-pot deconstruction and valorization of lignocellulosic biomass into triacetic acid lactone using Rhodosporidium toruloides

Abstract Background Rhodosporidium toruloides is capable of co-utilization of complex carbon sources and robust growth from lignocellulosic hydrolysates. This oleaginous yeast is therefore an attractive host for heterologous production of valuable bioproducts at high titers from low-cost, deconstructed biomass in an economically and environmentally sustainable manner. Here we demonstrate this by engineering R. toruloides to produce the polyketide triacetic acid lactone (TAL) directly from unfiltered hydrolysate deconstructed from biomass with minimal unit process operations. Results Introduction of the 2-pyrone synthase gene into R. toruloides enabled the organism to produce 2.4 g/L TAL from simple media or 2.0 g/L from hydrolysate produced from sorghum biomass. Both of these titers are on par with titers from other better-studied microbial hosts after they had been heavily engineered. We next demonstrate that filtered hydrolysates produced from ensiled sorghum are superior to those derived from dried sorghum for TAL production, likely due to the substantial organic acids produced during ensiling. We also demonstrate that the organic acids found in ensiled biomass can be used for direct synthesis of ionic liquids within the biomass pretreatment process, enabling consolidation of unit operations of in-situ ionic liquid synthesis, pretreatment, saccharification, and fermentation into a one-pot, separations-free process. Finally, we demonstrate this consolidation in a 2 L bioreactor using unfiltered hydrolysate, producing 3.9 g/L TAL. Conclusion Many steps involved in deconstructing biomass into fermentable substrate can be combined into a distinct operation, and directly fed to cultures of engineered R. toruloides cultures for subsequent valorization into gram per liter titers of TAL in a cost-effective manner.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2022

Finding values in lignin: A promising yet under-utilized component of the lignocellulosic biomass

This article outlines the technical and economic potentials of lignin in unlocking sustainable biorefineries. The benefits of using this highly functionalized biopolymer for the growth of sustainable economy have been highlighted. But practically, the possibility of commercially substituting petroleum oil with lignin is still not very high as the estimated biofuel production cost is 2–3 times higher than the former one. However, with the advancement in technology and more efficient measures by biorefineries such as storing and processing the biomass near the field so as to reduce the transportation cost, it is possible to gain higher profits. Companies like Domtar, Stora Enso, Borregaard’s LignoTech, VITO, and Chemelot InSciTe have been promoting commercial value of lignin. The growth of lignin market after the start-up production at various sites has been discussed in this review. Combining the complete “start-to-finish” analysis with economic evaluation gives a pragmatic overview of the possibilities whether lignin will join petroleum oil as an efficient and cost-effective renewable source.

Jassal, Vidhisha↗
DOE OSTI2022

Tracking snowmelt during hydrological surface processes using a distributed hydrological model in a mesoscale basin on the Tibetan Plateau

We report that mountain snowpack is an important water resource for the high altitude and latitude regions where the terrain is complex. However, the snowmelt pathway and its actual contribution to streamflow and soil moisture are rarely reported and remain unclear in such regions. To fill in this knowledge gap, we incorporate a snowmelt pathway tracking algorithm to a high-resolution physics-based distributed-hydrology-soil-vegetation model (DHSVM), to track snowmelt movement and quantify snowmelt contributions in the surface hydrologic processes. A simple reservoir operation scheme is also incorporated in the model. The modified model is applied to a dammed meso-scale watershed in the northeast Tibetan Plateau, China to study the snow and reservoir effects. The results show that annual snow contribution to soil moisture (SC-SM) and snow contribution to streamflow (SC-S) significantly decrease over 1965-2019. At a monthly scale, SC-SM has the largest amplitude at the top soil layer and its peak in the deeper layer lags behind the upper layer, and mean monthly SC-S at all stations show bimodal distributions corresponding to snowfall season. Reservoir regulation has subtle impacts (≤2.0%) on SC-S. If the current climate change rate continues, monthly and annual streamflow at the outlet will decrease primarily due to snowpack reduction. To mitigate climate change impacts, better water resource management is needed in this watershed.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2022

An ensemble data assimilation modeling system for operational outdoor microalgae growth forecasting

Microalgae have received increasing attention as a potential feedstock for biofuel or biobased products. Forecasting the microalgae growth is beneficial for managers in planning pond operations and harvesting decisions. This study proposed a biomass forecasting system comprised of the Huesemann Algae Biomass Growth Model (BGM), the Modular Aquatic Simulation System in Two Dimensions (MASS2), ensemble data assimilation (DA), and numerical weather prediction Global Ensemble Forecast System (GEFS) ensemble meteorological forecasts. The novelty of this study is to seek the use of ensemble DA to improve both BGM and MASS2 model initial conditions with the assimilation of biomass and water temperature measurements and consequently improve short-term biomass forecasting skills. This study introduces the theory behind the proposed integrated biomass forecasting system, with an application undertaken in pseudo-real-time in three outdoor ponds cultured with Chlorella sorokiniana in Delhi, California, United States. Results from all three case studies demonstrate that the biomass forecasting system improved the short-term (i.e., 7-day) biomass forecasting skills by about 60% on average, comparing to forecasts without using the ensemble DA method. Given the satisfactory performances achieved in this study, it is probable that the integrated BGM-MASS2-DA forecasting system can be used operationally to inform managers in making pond operation and harvesting planning decisions.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2022

CLM5 CAMELS Basins Ensemble

Land surface models such as Community Land Model Version 5 (CLM5) are essential tools for simulating the behaviors of the terrestrial system. Despite the extensive application of CLM5, limited attention has been paid to the underlying uncertainties associated with its hydrologic parameters and the implications that these uncertainties have on water resources applications. To address this long-standing issue, we conduct a comprehensive hydrologic parameter uncertainty characterization (UC) of CLM5 over the hydroclimatic gradients of the Conterminous United States using five meteorological datasets. Key datasets produced from the UC experiment include a benchmark dataset of CLM5 default hydrological performance, parameter sensitivity identified for 28 hydrological metrics, and large ensemble outputs for hydrological predictions. The presented datasets can assist CLM5 calibration and to support broad applications such as evaluating vulnerabilities to droughts and floods. The dataset can be used to identify under what hydroclimate conditions parametric uncertainties demonstrate substantial effects on hydrological predictions and clarify where further investigations are needed to understand how land runoff uncertainties interact with other Earth system processes. Please refer to the included README.pdf for a description of the included files. Note that raw CLM5 model outputs for each forcing dataset are hosted on a Globus endpoint: https://app.globus.org/file-manager?destination_id=d22ef858-27b0-11ed-a910-fd3165076336.

Yan, Hongxiang↗
DOE OSTI2022

The impact of forest-controlled snow variability on late-season streamflow varies by climatic region and forest structure

Previous studies have documented how forests influence snow at fine spatial scales, but none have documented the influence that existing forest-snow variability has on streamflow. Here to test how much forest-controlled snow variability influences streamflow, a tiling parameterization based on classifications from high-resolution (1–3 m) vegetation maps was incorporated into the Distributed Hydrology and Soil Vegetation Model (DHSVM). Within each grid cell (90–150 m), the tiling parameterization simulated forest-snow variability with four independently evolving snowpacks. Each tile had unique radiation conditions to represent conditions underneath the canopy, in exposed areas, and along north- and south-facing forest edges. This tiled parameterization was used to test where and when detailed forest-snow modelling should be considered further and where and when the impacts are too small to be worth the effort. To test this, tiled model simulations of streamflow were compared to non-tiled model simulations in the Sierra Nevada, CA, the Jemez Mountains, NM, and the Eastern Cascades, WA. In Tuolumne, CA, the tiled model simulated little difference in grid cell average SWE, and late-season streamflow decreased by only 3%–4% compared to the non-tiled model. In Jemez, NM, the tiled model decreased late-season streamflow by 18% due to increased sublimation. In Chiwawa, WA, the tiled model increased late-season streamflow by 15% due to high shortwave radiation attenuation and less longwave radiation enhancement from the forest. Furthermore, within the Chiwawa, a substantial silvicultural practice was synthetically implemented to increase the north-facing edge's fractional area. This silvicultural experiment, which used the same fractional forest area in all simulations increased late-season streamflow by 35% compared to tiled model simulations that did not represent forest edges. In conclusion, representing forest-SWE variability had an effect on late-season streamflow in some watersheds but not in others based on the fractional area of the forest edges, forest characteristics, and climate conditions.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2022

Mechanistic Simulations Suggest Riparian Restoration Can Partly Counteract Climate Impacts to Juvenile Salmon

Climate change is reducing summertime water availability and elevating water temperature, placing human consumptive needs in competition with needs of coldwater fishes. Here we worked with natural resource managers in the Snoqualmie River (Washington, USA) to develop riparian management scenarios, and used a process-based modeling system to examine how a threatened population of Chinook salmon (Oncorhynchus tschawytcha) may respond to climate change and whether riparian restoration could reduce climate effects. Linking models of global climate, regional hydrology and water temperature, and fish, we projected that streams would become warmer year-round and drier during summer, further stressing salmon. Climate change accelerated egg emergence, increased juvenile growth and survival, and accelerated outmigration of sub-yearling migrants. Growth was depressed for salmon remaining instream during summer (potential yearling migrants). Riparian restoration counteracted ~10% of summer increases in water temperature, and affected salmon similarly regardless of whether riparian buffers were partially or fully restored, whereas riparian degradation further warmed streams. Riparian restoration fully mitigated climate change effects on potential yearling migrant size, but only minimally affected sub-yearling migrants (assessment metrics changed <2%). Our results will be useful for watershed managers in aligning priorities for fish and humans and our framework can be applied elsewhere.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2022

Datasets for characterizing extreme events relevant to hydrologic design over the conterminous United States

Despite the close linkage between extreme floods and snowmelt, particularly through rain-on-snow (ROS), hydrologic infrastructure is mostly designed based on standard precipitation Intensity-Duration-Frequency curves (PREC-IDF) that neglect snow processes in runoff generation. For snow-dominated regions, such simplification could result in substantial errors in estimating extreme events and infrastructure design risk. To address this long-standing problem, we applied the Next Generation IDF (NG-IDF) technique to estimate design basis extreme events for different durations and return periods in the conterminous United States (CONUS) to distinctly represent the contribution of rain, snowmelt, and ROS events to the amount of water reaching the land surface. A suite of datasets were developed to characterize the magnitude, trend, seasonality, and dominant mechanism of extreme events for over 200,000 locations. Infrastructure design risk associated with the use of PREC-IDF was estimated. Accuracy of the model simulations used in the analyses was confirmed by long-term snow data at over 200 Snowpack Telemetry stations. The presented spatially continuous datasets are readily usable and instrumental for supporting site-specific infrastructure design.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2022

Forest Canopy Density Effects on Snowpack Across the Climate Gradients of the Western United States Mountain Ranges

Limitations inherent to field studies such as limited spatial and temporal coverage has made it very challenging, if not impossible, to explicitly disentangle the effect of canopy density from climate on snowpack dynamics. Hence, our understanding of how variations in canopy density can affect snow processes under diverse climate conditions has been limited. To address this knowledge gap, this study uses a physics-based modeling approach to represent most key processes that drive snow accumulation and melt in the open and forest with varied forest density, across the climate gradients of the Western U.S. mountain ranges, as represented by 228 Snow Telemetry (SNOTEL) locations. Simulations suggest that, under most winter climate conditions, canopy density exerts a strong influence on under-canopy snowpack dynamics and their controlling processes. Changing canopy density can shift the direction of the modeled differential peak snow accumulation and snow disappearance date (SDD) between the open and forest. For example, while simulated snowpack lasts longer in the open than the high-density forest at most wet/warm and dry/cold locations by up to 55 days, about 90% of all locations show a longer snow duration in the low-density forest by up to 27 days as compared to the open. Interannual variability in climate can also change the magnitude and direction of canopy impact on snow processes. By comparing model simulations to published field observations, and we also identify conditions that require additional field observations to improve process-scale understanding of forest-snow interaction.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2021

Genomics Characterization of an Engineered Corynebacterium glutamicum in Bioreactor Cultivation Under Ionic Liquid Stress

Corynebacterium glutamicum is an ideal microbial chassis for production of valuable bioproducts including amino acids and next generation biofuels. Here we resequence engineered isopentenol (IP) producing C. glutamicum BRC-JBEI 1.1.2 strain and assess differential transcriptional profiles using RNA sequencing under industrially relevant conditions including scale transition and compare the presence vs absence of an ionic liquid, cholinium lysinate ([Ch][Lys]). Analysis of the scale transition from shake flask to bioreactor with transcriptomics identified a distinct pattern of metabolic and regulatory responses needed for growth in this industrial format. These differential changes in gene expression corroborate altered accumulation of organic acids and bioproducts, including succinate, acetate, and acetoin that occur when cells are grown in the presence of 50 mM [Ch][Lys] in the stirred-tank reactor. This new genome assembly and differential expression analysis of cells grown in a stirred tank bioreactor clarify the cell response of an C. glutamicum strain engineered to produce IP.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2021

Cooperative Brønsted-Lewis acid sites created by phosphotungstic acid encapsulated metal–organic frameworks for selective glucose conversion to 5-hydroxymethylfurfural

Production of 5-hydroxymethylfurfural (HMF) from biomass-derived glucose has great potential for synthesis of renewable fuels and chemicals. Selective glucose conversion to 5-hydroxymethylfurfural requires a balance between Lewis and Brønsted acids for the cascade of glucose isomerization followed by fructose dehydration. A dual Brønsted-Lewis acid, phosphotungstic acid encapsulated MIL-101(Al)–NH 2 metal–organic frameworks (MOFs) was developed to catalyze the glucose dehydration reaction. The encapsulated catalysts had a high HMF selectivity of 58% at 44% glucose conversion at 120°C in [C 4 C 1 im]Cl. Phosphotungstic acid was uniformly dispersed in the MOF pores, which provided both Brønsted and Lewis acid sites for this cascade reaction. The Brønsted acidic phosphotungstic acid-encapsulated MOF catalyst was stable and recyclable at least four times. Here, these findings explain the effect of phosphotungstic acid location for maximizing the HMF selectivity and suggest a new approach for the design of bifunctional solid acid catalysts for selective HMF production from glucose. Moreover, the tunability of the acid properties of the encapsulated MOF catalysts provides opportunities for other biomass transformations.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗
DOE OSTI2021

Evaluation of bacterial hosts for conversion of lignin-derived p-coumaric acid to 4-vinylphenol

Abstract Hydroxycinnamic acids such as p -coumaric acid (CA) are chemically linked to lignin in grassy biomass with fairly labile ester bonds and therefore represent a straightforward opportunity to extract and valorize lignin components. In this work, we investigated the enzymatic conversion of CA extracted from lignocellulose to 4-vinylphenol (4VP) by expressing a microbial phenolic acid decarboxylase in Corynebacterium glutamicum , Escherichia coli, and Bacillus subtilis . The performance of the recombinant strains was evaluated in response to the substrate concentration in rich medium or a lignin liquor and the addition of an organic overlay to perform a continuous product extraction in batch cultures. We found that using undecanol as an overlay enhanced the 4VP titers under high substrate concentrations, while extracting > 97% of the product from the aqueous phase. C. glutamicum showed the highest tolerance to CA and resulted in the accumulation of up to 187 g/L of 4VP from pure CA in the overlay with a 90% yield when using rich media, or 17 g/L of 4VP with a 73% yield from CA extracted from lignin. These results indicate that C. glutamicum is a suitable host for the high-level production of 4VP and that further bioprocess engineering strategies should be explored to optimize the production, extraction, and purification of 4VP from lignin with this organism.

4-hydroxystyrene↗
DOE OSTI2021

Decontamination and Sterilization of Surfaces using Low Cost Ionic Liquids (CRADA Final Report)

The current study made a comprehensive literature review of the structure activity relationship (SAR) for microcidal and virucidal influence of ionic liquids. It summarized the key structure parameters that have close correlation to the antimicrobial and antiviral properties of the ILs. It proposed an experimental plan on developing and testing an effective ionic liquid from renewable lignocellulosic biomass. The goal is to understand the structure activity relationship (SAR) for virucidal influence of ionic liquids through comprehensive literature search and data analysis. A full experimental plan will be drafted based on the literature summary. Perform a comprehensive literature search to aid the development of an effective and easily deployable method to inactivate SARS-CoV-2 and decontaminate surfaces based on low-cost functional ionic liquids. These designer solvents have the potential to be a compelling and environmentally friendly alternative to common chemical disinfectants. Literature summary report including reported ionic liquid structures, synthesis and testing methods, and the structure activity relationship. Experimental plan on developing a low cost effective antiviral ionic liquid.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2021

Characterizing the Non-linear Interactions Between Tide, Storm Surge, and River Flow in the Delaware Bay Estuary, United States

Low-lying coastal areas in the mid-Atlantic region are prone to compound flooding resulting from the co-occurrence of river floods and coastal storm surges. To better understand the contribution of non-linear tide-surge-river interactions to compound flooding, the unstructured-grid Finite Volume Community Ocean Model was applied to simulate coastal storm surge and flooding in the Delaware Bay Estuary in the United States. The model was validated with tide gauge data in the estuary for selected hurricane events. Non-linear interactions between tide-surge-river were investigated using a non-stationary tidal analysis method, which decomposes the interactions’ components at the frequency domain. Model results indicated that tide-river interactions damped semidiurnal tides, while the tide-surge interactions mainly influenced diurnal tides. Tide-river interactions suppressed the water level upstream while tide-surge interaction increased the water level downstream, which resulted in a transition zone of damping and enhancing effects where the tide-surge-river interaction was prominent. Evident compound flooding was observed as a result of non-linear tide-surge-river interactions. Furthermore, sensitivity analysis was carried out to evaluate the effect of river flooding on the non-linear interactions. The transition zone of damping and enhancing effects shifted downstream as the river flow rate increased.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2021

mosartwmpy: A Python implementation of the MOSART-WM coupled hydrologic routing and water management model

mosartwmpy is a Python implementation of the Model for Scale Adaptive River Transport with Water Management (MOSART-WM). This new version retains the functionality of the legacy model (written in FORTRAN) while providing new features to enhance user experience and extensibility. MOSART is a large-scale river-routing model used to study riverine dynamics of water, energy, and biogeochemistry cycles across local, regional, and global scales (Li et al., 2013). The WM component introduced by Voisin et al. (2013) represents river regulation through reservoir storage and release operations, diversions from reservoir releases, and allocation to sectoral water demands. Each reservoir release is independently calibrated using long-term mean monthly inflow into the reservoir, long-term mean monthly demand associated with this reservoir, and reservoir goals (flood control, irrigation, recreation, etc.). Generic monthly pre-release rules and storage targets are set up for individual reservoirs; however, those releases are updated annually for inter-annual variability (dry or wet year) and daily for environmental constraints such as flow minimum release and minimum/maximum storage levels. The WM model allows an evaluation of the impact of water management over multiple river basins at once (global, continental scales) and with consistent representation of human operations over the full domain.

97 MATHEMATICS AND COMPUTING↗