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Thomas, Nathan

Publications and source records attributed to Thomas, Nathan.

Mangrove Mapping With the Freeman-Durden Polarimetric Decomposition and InSAR Coherence From ALOS-2

We map mangrove extents in Pongara National Park, Gabon using the Freeman-Durden Decomposition and InSAR Coherence derived from ALOS-2 imagery. Specifically, we obtain a land cover map derived from both this polarimetric decomposition and a 14-day repeat-pass coherence. Our classification model and results are highly interpretable based on a depth 2 decision tree. We further illustrate the correlation between InSAR coherence and height obtaining rough mangrove height estimates from TanDEM-X data. From our results, we observe that repeat-pass interferometric coherence provides invaluable information about mangrove extents and coastal forests. The clear identification of mangrove extents presents a significant opportunity for NISAR, which will provide 12-day repeat pass images over coastal areas globally.

Thomas, Nathan

Mangrove Canopy Height Globally Related to Precipitation, Temperature and Cyclone Frequency

Mangrove wetlands are among the most productive and carbon-dense ecosystems in the world. Their structural attributesvary considerably across spatial scales, yielding large uncertainties in regional and global estimates of carbon stocks. Here, wepresent a global analysis of mangrove canopy height gradients and aboveground carbon stocks based on remotely sensed measurementsand field data. Our study highlights that precipitation, temperature and cyclone frequency explain 74% of the globaltrends in maximum canopy height, with other geophysical factors influencing the observed variability at local and regionalscales. We find the tallest mangrove forests in Gabon, equatorial Africa, where stands attain 62.8 m. The total global mangrovecarbon stock (above- and belowground biomass, and soil) is estimated at 5.03 Pg, with a quarter of this value stored inIndonesia. Our analysis implies sensitivity of mangrove structure to climate change, and offers a baseline to monitor nationaland regional trends in mangrove carbon stocks.

Simard, Marc

Mapping Mangrove Extent and Change: A Globally Applicable Approach

This study demonstrates a globally applicable method for monitoring mangrove forest extent at high spatial resolution. A 2010 mangrove baseline was classified for 16 study areas using a combination of ALOS PALSAR and Landsat composite imagery within a random forests classifier. A novel map-to-image change method was used to detect annual and decadal changes in extent using ALOS PALSAR/JERS-1 imagery. The map-to-image method presented makes fewer assumptions of the data than existing methods, is less sensitive to variation between scenes due to environmental factors (e.g., tide or soil moisture) and is able to automatically identify a change threshold. Change maps were derived from the 2010 baseline to 1996 using JERS-1 SAR and to 2007, 2008 and 2009 using ALOS PALSAR. This study demonstrated results for 16 known hotspots of mangrove change distributed globally, with a total mangrove area of 2,529,760 ha. The method was demonstrated to have accuracies consistently in excess of 90% (overall accuracy: 92.2–93.3%, kappa: 0.86) for mapping baseline extent. The accuracies of the change maps were more variable and were dependent upon the time period between images and number of change features. Total change from 1996 to 2010 was 204,850 ha (127,990 ha gain, 76,860 ha loss), with the highest gains observed in French Guiana (15,570 ha) and the highest losses observed in East Kalimantan, Indonesia (23,003 ha). Changes in mangrove extent were the consequence of both natural and anthropogenic drivers, yielding net increases or decreases in extent dependent upon the study site. These updated maps are of importance to the mangrove research community, particularly as the continual updating of the baseline with currently available and anticipated spaceborne sensors. It is recommended that mangrove baselines are updated on at least a 5-year interval to suit the requirements of policy makers.

Thomas, Nathan

An Approach to Monitoring Mangrove Extents Through Time-Series Comparison of JERS-1 SAR and ALOS PALSAR Data

Between 2007 and 2010, Japan's Advanced Land Observing Satellite (ALOS) Phased Arrayed L-band Synthetic Aperture Radar (PALSAR) captured dual polarization HH and HV data across the tropics and sub-tropics. A pan tropical dataset of Japanese Earth Resources Satellite (JERS-1) SAR (HH) data was also acquired between 1995 and 1998. The provision of these comparable cloud-free datasets provided an opportunity for observing changes in the extent of coastal mangroves over more than a decade. Focusing on nine sites distributed through the tropics, this paper demonstrates how these data can be used to backdate and update existing baseline maps of mangrove extent. The benefits of integrating dense timeseries of Landsat sensor data for both validating assessments of change and determining the causes of change are outlined. The approach is evaluated for wider application across the geographical range of mangroves in order to advance the development of JAXA's Global Mangrove Watch (GMW) program.

ALOS PALSAR DATA

Multistage Electrophoretic Separators

A multistage electrophoresis apparatus has been invented for use in the separation of cells, protein molecules, and other particles and solutes in concentrated aqueous solutions and suspensions. The design exploits free electrophoresis but overcomes the deficiencies of prior free-electrophoretic separators by incorporating a combination of published advances in mathematical modeling of convection, sedimentation, electro-osmotic flow, and the sedimentation and aggregation of droplets. In comparison with other electrophoretic separators, these apparatuses are easier to use and are better suited to separation in relatively large quantities characterized in the art as preparative (in contradistinction to smaller quantities characterized in the art as analytical). In a multistage electrophoretic separator according to the invention, an applied vertical steady electric field draws the electrically charged particles of interest from within a cuvette to within a collection cavity that has been moved into position of the cuvette. There are multiple collection cavities arranged in a circle; each is aligned with the cuvette for a prescribed short time. The multistage, short-migration-path character of the invention solves, possibly for the first time, the fluid-instability problems associated with free electrophoresis. The figure shows a prototype multistage electrophoretic separator that includes four sample stations and five collection stages per sample. At each sample station, an aqueous solution or suspension containing charged species to be separated is loaded into a cuvette, which is machined into a top plate. The apparatus includes a lower plate, into which 20 collection cavities have been milled. Each cavity is filled with an electrophoresis buffer solution. For the collection of an electrophoretic fraction, the lower plate is rotated to move a designated collection cavity into alignment with the opening of the cuvette. An electric field is then applied between a non-gassing electrode in the collection cavity and an electrolyte compartment, which is separated from the cuvette by a semipermeable membrane. The electrolyte is refreshed by circulation by use of a peristaltic pump. In subsequent steps, the lower plate is rotated to collect other electrophoretic fractions. Later, the collected fractions are removed from the collection cavities through ports that have threaded plugs. The base of the apparatus contains power supplies and a computer interface. The design includes provisions for monitoring and feedback control of cavity position, electric field, and temperature. The operation of the apparatus can easily be automated, as demonstrated by use of software that has already been written for this purpose.

Thomas, Nathan