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Ustin, Susan L.

Publications and source records attributed to Ustin, Susan L..

At least 19 records

Applying Tafkaa For Atmospheric Correction of Aviris Over Coral Ecosystems In The Hawaiian Islands

Growing concern over the health of coastal ecosystems, particularly coral reefs, has produced increased interest in remote sensing as a tool for the management and monitoring of these valuable natural resources. Hyperspectral capabilities show promising results in this regard, but as yet remain somewhat hindered by the technical and physical issues concerning the intervening water layer. One such issue is the ability to atmospherically correct images over shallow aquatic areas, where complications arise due to varying effects from specular reflection, wind blown surface waves, and reflectance from the benthic substrate. Tafkaa, an atmospheric correction algorithm under development at the U.S. Naval Research Laboratory, addresses these variables and provides a viable approach to the atmospheric correction issue. Using imagery from the Advanced Visible InfraRed Imaging Spectrometer (AVIRIS) over two shallow coral ecosystems in the Hawai ian Islands, French Frigate Shoals and Kane ohe Bay, we first demonstrate how land-based atmospheric corrections can be limited in such an environment. We then discuss the input requirements and underlying algorithm concepts of Tafkaa and conclude with examples illustrating the improved performance of Tafkaa using the same AVIRIS images.

Goodman, James A.

Estimating Surface Soil Moisture in Simulated AVIRIS Spectra

Soil albedo is influenced by many physical and chemical constituents, with moisture being the most influential on the spectra general shape and albedo (Stoner and Baumgardner, 1981). Without moisture, the intrinsic or matrix reflectance of dissimilar soils varies widely due to differences in surface roughness, particle and aggregate sizes, mineral types, including salts, and organic matter contents. The influence of moisture on soil reflectance can be isolated by comparing similar soils in a study of the effects that small differences in moisture content have on reflectance. However, without prior knowledge of the soil physical and chemical constituents within every pixel, it is nearly impossible to accurately attribute the reflectance variability in an image to moisture or to differences in the physical and chemical constituents in the soil. The effect of moisture on the spectra must be eliminated to use hyperspectral imagery for determining minerals and organic matter abundances of bare agricultural soils. Accurate soil mineral and organic matter abundance maps from air- and space-borne imagery can improve GIS models for precision farming prescription, and managing irrigation and salinity. Better models of soil moisture and reflectance will also improve the selection of soil endmembers for spectral mixture analysis.

Whiting, Michael L.

Modeling and Prediction of Wildfire Hazard in Southern California, Integration of Models with Imaging Spectrometry

Large urban wildfires throughout southern California have caused billions of dollars of damage and significant loss of life over the last few decades. Rapid urban growth along the wildland interface, high fuel loads and a potential increase in the frequency of large fires due to climatic change suggest that the problem will worsen in the future. Improved fire spread prediction and reduced uncertainty in assessing fire hazard would be significant, both economically and socially. Current problems in the modeling of fire spread include the role of plant community differences, spatial heterogeneity in fuels and spatio-temporal changes in fuels. In this research, we evaluated the potential of Airborne Visible/Infrared Imaging Spectrometer (AVIRIS) and Airborne Synthetic Aperture Radar (AIRSAR) data for providing improved maps of wildfire fuel properties. Analysis concentrated in two areas of Southern California, the Santa Monica Mountains and Santa Barbara Front Range. Wildfire fuel information can be divided into four basic categories: fuel type, fuel load (live green and woody biomass), fuel moisture and fuel condition (live vs senesced fuels). To map fuel type, AVIRIS data were used to map vegetation species using Multiple Endmember Spectral Mixture Analysis (MESMA) and Binary Decision Trees. Green live biomass and canopy moisture were mapped using AVIRIS through analysis of the 980 nm liquid water absorption feature and compared to alternate measures of moisture and field measurements. Woody biomass was mapped using L and P band cross polarimetric data acquired in 1998 and 1999. Fuel condition was mapped using spectral mixture analysis to map green vegetation (green leaves), nonphotosynthetic vegetation (NPV; stems, wood and litter), shade and soil. Summaries describing the potential of hyperspectral and SAR data for fuel mapping are provided by Roberts et al. and Dennison et al. To utilize remotely sensed data to assess fire hazard, fuel-type maps were translated into standard fuel models accessible to the FARSITE fire spread simulator. The FARSITE model and BEHAVE are considered industry standards for fire behavior analysis. Anderson level fuels map, generated using a binary decision tree classifier are available for multiple dates in the Santa Monica Mountains and at least one date for Santa Barbara. Fuel maps that will fill in the areas between Santa Barbara and the Santa Monica Mountains study sites are in progress, as part of a NASA Regional Earth Science Application Center, the Southern California Wildfire Hazard Center. Species-level maps, were supplied to fire managing agencies (Los Angeles County Fire, California Department of Forestry). Research results were published extensively in the refereed and non-refereed literature. Educational outreach included funding of several graduate students, undergraduate intern training and an article featured in the California Alliance for Minorities Program (CAMP) Quarterly Journal.

Roberts, Dar A.

A Multi-Scale Sampling Strategy for Detecting Physiologically Significant Signals in AVIRIS Imagery

Models of photosynthetic production at ecosystem and global scales require multiple input parameters specifying physical and physiological surface features. While certain physical parameters (e.g., absorbed photosynthetically active radiation) can be derived from current satellite sensors, other physiologically relevant measures (e.g., vegetation type, water status, carboxylation capacity, or photosynthetic light-use efficiency), are not generally directly available from current satellite sensors at the appropriate geographic scale. Consequently, many model parameters must be assumed or derived from independent sources, often at an inappropriate scale. An abundance of ecophysiological studies at the leaf and canopy scales suggests strong physiological control of vegetation-atmosphere CO2 and water vapor fluxes, particularly in evergreen vegetation subjected to diurnal or seasonal stresses. For example hot, dry conditions can lead to stomatal closure, and associated "downregulation" of photosynthetic biochemical processes, a phenomenon often manifested as a "midday photosynthetic depression". A recent study with the revised simple biosphere (SiB2) model demonstrated that photosynthetic downregulation can significantly impact global climate. However, at the global scale, the exact significance of downregulation remains unclear, largely because appropriate physiological measures are generally unavailable at this scale. Clearly, there is a need to develop reliable ways of extracting physiologically relevant information from remote sensing. Narrow-band spectrometers offer many opportunities for deriving physiological parameters needed for ecosystem and global scale photosynthetic models. Experimental studies on the ground at the leaf- to stand-scale have indicated that several narrow-band features can be used to detect plant physiological status. One physiological signal is caused by xanthophyll cycle pigment activity, and is often expressed as the Photochemical Reflectance Index (PRI). Because the xanthophyll cycle pigments are photoregulatory pigments closely linked to photosynthetic function, this index can be used to derive relative photosynthetic rates. An additional signal with physiological significance is the 970 nm water absorption band, which provides a measure of liquid water content. This feature has been quantified both using a simple 2-band ratio (900/970 nm, here referred to as the "Water Band Index" or WBI;), and using the "continuum removal" method. Current atmospheric correction methods for AVIRIS imagery also obtain quantitative expressions of surface liquid water absorption based on the 970 nm water band and may be comparable to ground-based estimates of water content using this feature. However, physiological interpretations of both the PRI and the WBI are best understood at the leaf and canopy scales, where complications of atmospheric interference and complex stand and landscape features can be minimized, and where experimental manipulations can be readily applied. Currently it is not known whether these physiological indices can be used to derive meaningful physiological information from AVIRIS imagery. In addition to the problem of atmospheric interference, another challenge is that any simple physiological index can be confounded by multiple factors unrelated to physiology, and this problem can become more severe at progressively larger spatial scales. For example, previous work has suggested that both the PRI and the WBI, are strongly correlated with other optical measures of canopy structure (e.g., the Normalized Difference Vegetation Index or green vegetation fraction), indicating a confounding effect of structure on physiological signals at the larger, landscape scale. Furthermore, the normal operating mode of most imaging spectrometers does not allow simultaneous, ground truthing at a level of detail needed for physiological sampling. Additionally, manipulative experiments of physiology are difficult to apply at a geographic scale suitable for comparison with remote imagery, which often works at spatial scales that are several orders of magnitude larger than those typically used for physiological studies. These limitations require the consideration of alternative approaches to validating physiological information derived from AVIRIS data. In this report, we present a multi-scale sampling approach to detecting physiologically significant signals in narrow-band spectra. This approach explores the multi-dimensional data space provided by narrow-band spectrometry, and combines AVIRIS imagery at a large scale, with ground spectral sampling at an intermediate scale, and detailed ecophysiological measurements at a fine scale, to examine seasonally and spatially changing relationships between multiple structural and physiological variables. Examples of this approach are provided by simultaneous sampling of the Normalized Difference Vegetation Index (NDVI), an index of fractional PAR interception and green vegetation cover, the Water Band Index (WBI, an index of liquid water absorption, and the Photochemical Reflectance Index (PRI, an index of xanthophyll cycle pigment activity and photosynthetic light-use efficiency. By directly linking changing optical properties sampled on the ground with measurable physiological states, we hope to develop a basis for interpreting similar signals in AVIRIS imagery.

Gamon, John A.

Evaluation of Landscape Structure Using AVIRIS Quicklooks and Ancillary Data

Currently the best tool for examining landscape structure is remote sensing, because remotely sensed data provide complete and repeatable coverage over landscapes in many climatic regimes. Many sensors, with a variety of spatial scales and temporal repeat cycles, are available. The Airborne Visible/Infrared Imaging Spectrometer (AVIRIS) has imaged over 4000 scenes from over 100 different sites throughout North America. For each of these scenes, one-band "quicklook" images have been produced for review by AVIRIS investigators. These quicklooks are free, publicly available over the Internet, and provide the most complete set of landscape structure data yet produced. This paper describes the methodologies used to evaluate the landscape structure of quicklooks and generate corresponding datasets for climate, topography and land use. A brief discussion of preliminary results is included at the end. Since quicklooks correspond exactly to their parent AVIRIS scenes, the methods used to derive climate, topography and land use data should be applicable to any AVIRIS analysis.

Sanderson, Eric W.

Mapping Northern Exposure With POLDER: Application for Circumpolar Methane Exchange

Three images types from POLDER airborne imagery, nadir looking multi-spectral bands, multiple view-angle images of the red band, and combined datasets, were used to classify land cover types at the NASA southern BOREAS study site in Saskatchewan, Canada. We found that combining multiple view-angle imagery with nadir viewing multi-spectral bands provided the greatest accuracy and discrimination of the largest number of inundated and non-inundated land cover classes. While the nadir looking multi-spectral band data correctly separated open water from other land cover classes it did not separate the inundated vegetated regions that define boreal wetlands. Multiple view-angle data could separate two upland vegetation types and open water but only one inundated vegetation type.

Ustin, Susan L.

Estimating Canopy Water Content of Chaparral Shrubs Using Optical Methods

California chaparral ecosystems are exceptionally fire adapted and typically are subject to wildfire at decadal to century frequencies. The hot dry Mediterranean climate summers and the chaparral communities of the Santa Monica Mountains make wildfire one of the most serious economic and life-threatening natural disasters faced by the region.

ecosystems

A Ground Truthing Method for AVIRIS Overflights Using Canopy Absorption Spectra

Remote sensing for ecological field studies requires ground truthing for accurate interpretation of remote imagery. However, traditional vegetation sampling methods are time consuming and hard to relate to the scale of an AVIRIS scene. The large errors associated with manual field sampling, the contrasting formats of remote and ground data, and problems with coregistration of field sites with AVIRIS pixels can lead to difficulties in interpreting AVIRIS data. As part of a larger study of fire risk in the Santa Monica Mountains of southern California, we explored a ground-based optical method of sampling vegetation using spectrometers mounted both above and below vegetation canopies. The goal was to use optical methods to provide a rapid, consistent, and objective means of "ground truthing" that could be related both to AVIRIS imagery and to conventional ground sampling (e.g., plot harvests and pigment assays).

Gamon, John A.

Estimating Canopy Water Content of Chaparral Shrubs Using Optical Methods

California chaparral ecosystems are exceptionally fire adapted and typically are subject to wildfire at decadal to century frequencies. The hot dry Mediterranean climate summers and the chaparral communities of the Santa Monica Mountains make wildfire one of the most serious economic and life-threatening natural disasters faced by the region. Additionally, the steep fire-burned hillsides are subject to erosion, slumpage, and mud slides during the winter rains. The Santa Monica Mountain Zone (SMMZ) is a 104,000 ha eastwest trending range with 607 m of vertical relief and located in the center of the greater Los Angeles region. A series of fires in the fall of 1993 burned from Simi Valley to Santa Monica within a few hours. Developing techniques to monitor fire hazard and predict the spread of fire is of major concern to the region. One key factor in the susceptibility to fire is the water content of the vegetation canopy. The development of imaging spectrometry and remote sensing techniques may constitute a tool to provide this information.

Ustin, Susan L.

Estimating dry grass residues using landscape integration analysis

The acreage of grassland and grassland-savannah is extensive in California, making direct measurement and assessment logistically impossible. Grasslands cover the entire Central Valley up to about 1200 m elevation in the Coast Range and Sierra Nevada Range. Kuchler's map shows 5.35 M ha grassland with an additional 3.87 M ha in Oak savannah. The goal of this study was to examine the use of high spectral resolution sensors to distinguish between dry grass and soil in remotely sensed images. Spectral features that distinguish soils and dry plant material in the shortwave infrared (SWIR) region are thought to be primarily caused by cellulose and lignin, biochemicals which are absent from soils or occur as breakdown products in humid substances that lack the narrow-band features. We have used spectral mixing analysis (SMA) combined with Geographic Information Systems (GIS) analysis to characterize plant communities and dry grass biomass. The GIS was used to overlay elevation maps, and vegetation maps, with the SMA results. The advantage of non-image data is that it provides an independent source of information for the community classification.

Hart, Quinn J.

Relationships between pigment composition variation and reflectance for plant species from a coastal savannah in California

Advances in imaging spectroscopy have indicated that remotely sensed reflectance measurements of the plant canopy may be used to identify and qualify some classes of canopy biochemicals; however, the manner in which differences in biochemical compositions translate into differences is not well understood. Most frequently, multiple linear regression routines have been used to correlate narrow band reflectance values with measured biochemical concentrations. Although some success has been achieved with such methods for given data sets, the bands selected by multiple regression are not consistent between data sets, nor is it always clear what physical or biological basis underlies the correlation. To examine the relationship between biochemical concentration and leaf reflectance signal we chose to focus on the visible spectrum where the primary biochemical absorbances are due to photosynthetic pigments. Pigments provide a range of absorbance features, occur over a range of concentrations in natural samples, and are ecophysiologically important. Concentrations of chlorophyll, for example, have been strongly correlated to foliar nitrogen levels within a species and to photosynthetic capacity across many species. In addition pigments effectively absorb most of the photosynthetically active radiation between 400-700 nm, a spectral region for which silicon detectors have good signal/noise characteristics. Our strategy has been to sample a variety of naturally occurring species to measure leaf reflectance and pigment compositions. We hope to extend our understanding of pigment reflectance effects to interpret small overlapping absorbances of other biochemicals in the infrared region. For this reason, selected samples were also tested to determine total nitrogen, crude protein, cellulose, and lignin levels. Leaf reflectance spectra measured with AVIRIS bandwidths and wavelengths were compared between species and within species and for differences between seasons, for changes in the the shape of the spectra. We attempt to statistically correlate these shape changes with differences in pigment compositions. In parallel with our comparisons of pigment composition and leaf reflectance, we have modified the PROSPECT leaf reflectance model to test the contributions of pigments or pigment group concentrations. PROSPECT considers a leaf as a multi-layer dielectric plane with an uneven surface. Jacquemoud adapted the basic analysis of Allen for surface effects, a leaf thickness factor, and the absorption of water and chlorophyll (actually all pigments) and the plant matrix. Our modifications to PROSPECT in the forward direction include breaking out the pigment concentration parameter into separate components for chlorophyll a and b and a number of xanthophylls and carotenes, and introducing a shift and convolution function to model the spread and shift from their in vitro measurements to their in vivo state. Further, we have considered how the matrix elements (i.e., all biochemicals and structural effects not modeled explicity) vary with species.

Ustin, Susan L.

Monitoring of wildfires in boreal forests using large area AVHRR NDVI composite image data

Normalized difference vegetation index (NDVI) composite image data, produced from AVHRR data collected in 1990, were evaluated for locating and mapping the areal extent of wildfires in the boreal forests of Alaska during that year. A technique was developed to map forest fire boundaries by subtracting a late-summer AVHRR NDVI image from an early summer scene. The locations and boundaries of wildfires within the interior region of Alaska were obtained from the Alaska Fire Service, and compared to the AVHRR-derived fire-boundary map. It was found that AVHRR detected 89.5 percent of all fires with sizes greater than 2000 ha with no false alarms and that, for most cases, the general shape of the fire boundary detected by AVHRR matched those mapped by field observers. However, the total area contained within the fire boundaries mapped by AVHRR were only 61 percent of those mapped by the field observers. However, the AVHRR data used in this study did not span the entire time period during which fires occurred, and it is believed the areal estimates could be improved significantly if an expanded AVHRR data set were used.

Kasischke, Eric S.

Functional patterns in an annual grassland during an AVIRIS overflight

This study relates Airborne Visible/Infrared Imaging Spectrometer (AVIRIS) imagery to ground measurements of vegetation distribution, physiology, and productivity at Stanford University's Jasper Ridge Biological Preserve. Primary efforts focused on a 9-ha region of annual grassland where we completed a detailed ground-based study in conjunction with a 15 May 1991 AVIRIS overflight. Spectral mixture analysis and the normalized difference vegetation index (NDVI) calculated from AVIRIS data were used to evaluate spatial patterns of vegetation type, productivity, and potential physiological activity. Concurrent ground sampling revealed a high degree of correlation between NDVI and estimates of canopy chemistry, structure, productivity, and CO2 flux, supporting the use of imaging spectrometry to estimate spatial and temporal trends in vegetation physiology and productivity in this relatively simple grassland ecosystem. Geostatistical analyses of both ground and AVIRIS data supported the conclusion that the AVIRIS pixel size was suitable for describing the influence of major landscape features in this grassland and that spatial detail would be lost at slightly larger pixel sizes typical of other imaging spectrometers.

Gamon, John A.

Using AVIRIS images to measure temporal trends in abundance of photosynthetic and nonphotosynthetic canopy components

The Jasper Ridge Biological Preserve, Stanford, California is a good example of hardwood rangeland ecosystems in California. Structurally, it is composed of a mosaic of serpentine grasslands, oak savannah, coastal chaparral, and mixed evergreen woodland, representing a broad cross-section of physiognomic classes. The Mediterranean climate produces an extended seasonal drought lasting throughout most of the growing season and has significant impact on the expression of divergent phenological patterns related to contrasting ecological strategies of these taxa. The region is well understood biologically due to the rich history of ecological research at the site. Thus, community characteristics, physiological characteristics, phenology, and temporal dynamics are reasonably well understood for many of the dominant species. Because of its proximity to NASA Ames Research Center, it has been subject to a large number of aircraft data acquisitions over many years. A more complete examination of this database would provide an opportunity to test current remote sensing hypotheses for measurement and detection of ecological attributes, particularly those involving canopy chemistry and physiology. Better definition of ecological rules might permit development of remotely sensed surrogate variables for biological properties that cannot be directly measured or measured with sufficient accuracy.

Ustin, Susan L.

Evaluation of spatial productivity patterns in an annual grassland during an AVIRIS overflight

In May 1991, coincident with an Airborne Visible/Infrared Imaging Spectrometer (AVIRIS) overflight, a ground-based study covering 9 hectares of an annual grassland was completed. There were two goals of this ground study: (1) obtain ecologically and physiologically meaningful data for relating AVIRIS images to canopy structure, biochemistry, and physiology; and (2) evaluate the suitability of the 20-m AVIRIS pixel size for depicting detailed spatial patterns of productivity.

Gamon, John A.

Mapping the spectral variability in photosynthetic and non-photosynthetic vegetation, soils, and shade using AVIRIS

The primary objective of this research was to map as many spectrally distinct types of green vegetation (GV), non-photosynthetic vegetation (NPV), shade, and soil (endmembers) in an Airborne Visible/Infrared Imaging Spectrometer (AVIRIS) scene as is warranted by the spectral variability of the data. Once determined, a secondary objective was to interpret these endmembers and their abundances spatially and spectrally in an ecological context.

Roberts, Dar A.

Using endmembers in AVIRIS images to estimate changes in vegetative biomass

Field techniques for estimating vegetative biomass are labor intensive, and rarely are used to monitor changes in biomass over time. Remote-sensing offers an attractive alternative to field measurements; however, because there is no simple correspondence between encoded radiance in multispectral images and biomass, it is not possible to measure vegetative biomass directly from AVIRIS images. Ways to estimate vegetative biomass by identifying community types and then applying biomass scalars derived from field measurements are investigated. Field measurements of community-scale vegetative biomass can be made, at least for local areas, but it is not always possible to identify vegetation communities unambiguously using remote measurements and conventional image-processing techniques. Furthermore, even when communities are well characterized in a single image, it typically is difficult to assess the extent and nature of changes in a time series of images, owing to uncertainties introduced by variations in illumination geometry, atmospheric attenuation, and instrumental responses. Our objective is to develop an improved method based on spectral mixture analysis to characterize and identify vegetative communities, that can be applied to multi-temporal AVIRIS and other types of images. In previous studies, multi-temporal data sets (AVIRIS and TM) of Owens Valley, CA were analyzed and vegetation communities were defined in terms of fractions of reference (laboratory and field) endmember spectra. An advantage of converting an image to fractions of reference endmembers is that, although fractions in a given pixel may vary from image to image in a time series, the endmembers themselves typically are constant, thus providing a consistent frame of reference.

Smith, Milton O.

The 1991 AVIRIS/POLDER experiment in Camargue, France

Airborne campaigns during the eighties provided high spectral resolution data, collected with imaging instruments such as AIS, AVIRIS, FLI, CAESI, and ISM, in order to investigate the relationship with canopy biophysical characteristics. The statistical approaches used to analyze these data do not allow investigation of the causality and the applicability of the observed correlations. Further, statistical studies demonstrated the high degree of redundancy of the spectral information amongst many others. And for retrieving vegetation biophysical characteristics, few results demonstrate the real information gain attributable to the high spectral resolution capability as compared to the use of a few wide wavelength bands. With several new imaging spectrophotometers scheduled for launch during the next 10 years (MERIS, MODIS, HIRIS), progress in the description and understanding of the mechanisms that drive the spectral variation of canopy reflectance is required. Most of these new sensor systems will also have the capability to observe the target under differing view directions. The problem of the combination and the use of the synergy between both the spectral and the directional sources of canopy reflectance variations has to be addressed. Apart from the atmospheric effects, the spectral variation of the light reflected by canopies originates from the leaves, the soil or the other vegetation elements such as branches and fruits. At leaf level, both diffuse reflectance and transmittance may be simulated by simple models, although no accurate information exists on the absorption features of the biochemicals (except water) in the 900-2500nm wavelength range. Many models mimic the directional variability of canopy reflectance at a given wavelength. Combining a leaf spectral model with a canopy directional model provides a powerful tool to analyze this problem. Some of us have initiated such a study, but our approach and theory remain to be tested using canopy data with their complexity, associated experimental error, and atmospheric effects. The main objective of the 1990 POLDER/AVIRIS experiment in Camargue was to provide a consistent data set over various canopies in order to test the applicability of the theory. The experiment, part of the 1991 MAC Europe experiment, involved simultaneous data collection using two sensors: AVIRIS and POLDER which measures the bidirectional and polarization properties of the targets at 670 and 880nm wavebands.

Baret, F.