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Watson, Thomas

Publications and source records attributed to Watson, Thomas.

At least 19 records
All sourcesNASA NTRSDOE OSTI
DOE OSTI2020

Large contribution of organics to condensational growth and formation of cloud condensation nuclei (CCN) in the remote marine boundary layer

Marine low clouds strongly influence global climate, and their radiative effects are particularly susceptible to the concentration of cloud condensation nuclei (CCN). One major source of CCN is the condensational growth of pre-CCN particles, and sulfate has long been considered the major condensing species in the remote marine boundary layer. While some studies have suggested that secondary organic species can contribute to particle growth, its importance remains unclear. Here we present the first long-term observational evidence that organics play an important role in particle growth over remote oceans. To the contrary of traditional thinking, sulfate dominated condensational growth for only a small (~18 %) fraction of the 62 observed growth events, even fewer than the organic-dominated events (24 %). During most (58 %) growth events, the major condensing species included both organics and sulfate. Potential precursors of the secondary organics are volatile organic compounds from ocean biological activities and those produced by the air–sea interfacial oxidation. Our results indicate that the condensation of secondary organics contributes strongly to the growth of pre-CCN particles and thereby the CCN population over remote oceans.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2020

Southern Great Planes Aerosol Chemical Speciation Data

The data files consist of ACSM speciated mass loadings in ug m-3. The speciea reported are nitrate, sulfate, ammonium, organics, and chloride. Mass loadings are calculated with a collection efficiency of 1 pending further research into the composition dependance of the collection efficiency.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2019

aosacsm.b1

ACSM instrument measure mass loading (ug/m3) of non-refractory aerosol particles particularly organics, sulfate, chlorides, ammonium, and nitrates in real-time. The instrument is run autonomously at various ARM sites at time resolution equal to 30 minutes. Different data products are developed. The raw data (.itx and .asc) files are ingested to produce the.a0 product - the first netCDF file. These raw files are used by the mentor to calculate the mentor processed mass loadings. The .a0 files are used to develop the .b1 level product. The .b1 level data is further integrated with mentor processed data to produce .c0 level data product.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2018

Scalable deep text comprehension for Cancer surveillance on high-performance computing

Background: Deep Learning (DL) has advanced the state-of-the-art capabilities in bioinformatics applications which has resulted in trends of increasingly sophisticated and computationally demanding models trained by larger and larger data sets. This vastly increased computational demand challenges the feasibility of conducting cutting-edge research. One solution is to distribute the vast computational workload across multiple computing cluster nodes with data parallelism algorithms. In this study, we used a High-Performance Computing environment and implemented the Downpour Stochastic Gradient Descent algorithm for data parallelism to train a Convolutional Neural Network (CNN) for the natural language processing task of information extraction from a massive dataset of cancer pathology reports. We evaluated the scalability improvements using data parallelism training and the Titan supercomputer at Oak Ridge Leadership Computing Facility. To evaluate scalability, we used different numbers of worker nodes and performed a set of experiments comparing the effects of different training batch sizes and optimizer functions.Results: We found that Adadelta would consistently converge at a lower validation loss, though requiring over twice as many training epochs as the fastest converging optimizer, RMSProp. The Adam optimizer consistently achieved a close 2nd place minimum validation loss significantly faster; using a batch size of 16 and 32 allowed the network to converge in only 4.5 training epochs.Conclusions: We demonstrated that the networked training process is scalable across multiple compute nodes communicating with message passing interface while achieving higher classification accuracy compared to a traditional machine learning algorithm.

Qiu, John X.↗
DOE OSTI2018

First ARM Aerosol Chemical Speciation Monitor Users’ Meeting Report

The first U.S. Department of Energy (DOE) Atmospheric Radiation Measurement (ARM) user facility aerosol chemical speciation monitor (ACSM) users’ meeting was held on April 11-13, 2017, at Aerodyne Research, Inc. in Billerica, Massachusetts, to discuss the Southern Great Plains (SGP) atmospheric observatory ACSM data quality and establish best practices for data collection and processing. The participants examined six years of calibration and processed data. Specific issues raised by data users were addressed and case studies from two field experiments were examined. The most recent data from the ACSM installed in the newly commissioned SGP ARM Mobile Facility 7 (AMF7) were also evaluated. The participants recommended that the SGP ACSM data be reprocessed using calibration values averaged over the history of SGP ACSM calibrations. They also recommended that the data quality be evaluated by comparing (1) observed versus predicted particulate ammonium (NH 4 + ) mass loadings, and (2) ACSM mass loadings versus mass loadings calculated from particle size and light scattering data. The contents of the datastreams from the ACSM were defined based on ARM requirements and the necessary tasks to implement these recommendations were assigned to the mentor and the instrument manufacturer. Some of the recommendations were implemented for the SGP data and are presented in this report. Data from two ARM sites located in marine environments were also analyzed. These analyses as well as instrument intercomparisons have led to further questions about data treatment. These will be addresses in the second users’ meeting scheduled for the summer of 2018.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗
DOE OSTI2018

First ARM Aerosol Chemical Speciation Monitor Users’ Meeting Report

The first U.S. Department of Energy (DOE) Atmospheric Radiation Measurement (ARM) user facility aerosol chemical speciation monitor (ACSM) users’ meeting was held on April 11-13, 2017, at Aerodyne Research, Inc. in Billerica, Massachusetts, to discuss the Southern Great Plains (SGP) atmospheric observatory ACSM data quality and establish best practices for data collection and processing. The participants examined six years of calibration and processed data. Specific issues raised by data users were addressed and case studies from two field experiments were examined. The most recent data from the ACSM installed in the newly commissioned SGP ARM Mobile Facility 7 (AMF7) were also evaluated. The participants recommended that the SGP ACSM data be reprocessed using calibration values averaged over the history of SGP ACSM calibrations. They also recommended that the data quality be evaluated by comparing (1) observed versus predicted particulate ammonium (NH 4 + ) mass loadings, and (2) ACSM mass loadings versus mass loadings calculated from particle size and light scattering data. The contents of the datastreams from the ACSM were defined based on ARM requirements and the necessary tasks to implement these recommendations were assigned to the mentor and the instrument manufacturer. Some of the recommendations were implemented for the SGP data and are presented in this report. Data from two ARM sites located in marine environments were also analyzed. These analyses as well as instrument intercomparisons have led to further questions about data treatment. These will be addresses in the second users’ meeting scheduled for the summer of 2018.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2018

First ARM Aerosol Chemical Speciation Monitor Users’ Meeting Report

The first U.S. Department of Energy (DOE) Atmospheric Radiation Measurement (ARM) user facility aerosol chemical speciation monitor (ACSM) users’ meeting was held on April 11-13, 2017, at Aerodyne Research, Inc. in Billerica, Massachusetts, to discuss the Southern Great Plains (SGP) atmospheric observatory ACSM data quality and establish best practices for data collection and processing. The participants examined six years of calibration and processed data. Specific issues raised by data users were addressed and case studies from two field experiments were examined. The most recent data from the ACSM installed in the newly commissioned SGP ARM Mobile Facility 7 (AMF7) were also evaluated. The participants recommended that the SGP ACSM data be reprocessed using calibration values averaged over the history of SGP ACSM calibrations. They also recommended that the data quality be evaluated by comparing (1) observed versus predicted particulate ammonium (NH4+) mass loadings, and (2) ACSM mass loadings versus mass loadings calculated from particle size and light scattering data. The contents of the datastreams from the ACSM were defined based on ARM requirements and the necessary tasks to implement these recommendations were assigned to the mentor and the instrument manufacturer. Some of the recommendations were implemented for the SGP data and are presented in this report. Data from two ARM sites located in marine environments were also analyzed. These analyses as well as instrument intercomparisons have led to further questions about data treatment. These will be addresses in the second users’ meeting scheduled for the summer of 2018.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2018

Urban Dispersion Virtual Workshop: Designing the Next Generation Urban Dispersion Field Programs

The overarching objective of this workshop is to start the process of planning and implementing the “Next Generation of Urban Dispersion Studies”. We have organized this program to bring people interested in this complex problem together. We have representation from different disciplines, different agencies, and different academic institutions. The workshop is organized around several questions: • What are the needs of the emergency response community and how do we design models and experiments to address them? • What model improvements do the user communities need? • How do we design tracer release and sampling to address questions temporal (e.g., diurnal and seasonal variation) and spatial (e.g., land/urban/water gradients) for the broadest applicability? • What are the next-generation measurements needed to improve the data sets? • How do we implement the next generation urban dispersion experiments? The Virtual workshop format is exciting. We view this as an experiment which, if successful, will bring a large group of people together from the community to design the next generation urban experiments. We have many agencies participating: DOE-BER, DHS, FEMA, NNSA, NARAC, DTRA, NYPD, and NIST. The registration list includes over 40 people including participants from well beyond the US including Spain and Canada.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2017

CCN activity and organic hygroscopicity of aerosols downwind of an urban region in central Amazonia: seasonal and diel variations and impact of anthropogenic emissions

Abstract. During the Observations and Modeling of the Green Ocean Amazon (GoAmazon2014/5) campaign, size-resolved cloud condensation nuclei (CCN) spectra were characterized at a research site (T3) 60 km downwind of the city of Manaus, Brazil, in central Amazonia for 1 year (12 March 2014 to 3 March 2015). Particle hygroscopicity (κCCN) and mixing state were derived from the size-resolved CCN spectra, and the hygroscopicity of the organic component of the aerosol (κorg) was then calculated from κCCN and concurrent chemical composition measurements. The annual average κCCN increased from 0.13 at 75 nm to 0.17 at 171 nm, and the increase was largely due to an increase in sulfate volume fraction. During both wet and dry seasons, κCCN, κorg, and particle composition under background conditions exhibited essentially no diel variations. The constant κorg of ∼ 0. 15 is consistent with the largely uniform and high O : C value (∼ 0. 8), indicating that the aerosols under background conditions are dominated by the aged regional aerosol particles consisting of highly oxygenated organic compounds. For air masses strongly influenced by urban pollution and/or local biomass burning, lower values of κorg and organic O : C atomic ratio were observed during night, due to accumulation of freshly emitted particles, dominated by primary organic aerosol (POA) with low hygroscopicity, within a shallow nocturnal boundary layer. The O : C, κorg, and κCCN increased from the early morning hours and peaked around noon, driven by the formation and aging of secondary organic aerosol (SOA) and dilution of POA emissions into a deeper boundary layer, while the development of the boundary layer, which leads to mixing with aged particles from the residual layer aloft, likely also contributed to the increases. The hygroscopicities associated with individual organic factors, derived from PMF (positive matrix factorization) analysis of AMS (aerosol mass spectrometry) spectra, were estimated through multivariable linear regression. For the SOA factors, the variation of the κ value with O : C agrees well with the linear relationship reported from earlier laboratory studies of SOA hygroscopicity. On the other hand, the variation in O : C of ambient aerosol organics is largely driven by the variation in the volume fractions of POA and SOA factors, which have very different O : C values. As POA factors have hygroscopicity values well below the linear relationship between SOA hygroscopicity and O : C, mixtures with different POA and SOA fractions exhibit a steeper slope for the increase in κorg with O : C, as observed during this and earlier field studies. This finding helps better understand and reconcile the differences in the relationships between κorg and O : C observed in laboratory and field studies, therefore providing a basis for improved parameterization in global models, especially in a tropical context.

Thalman, Ryan↗
DOE OSTI2017

CCN activity and organic hygroscopicity of aerosols downwind of an urban region in central Amazonia: Seasonal and diel variations and impact of anthropogenic emissions

During the Observations and Modeling of the Green Ocean Amazon (GoAmazon2014/5) campaign, size-resolved cloud condensation nuclei (CCN) spectra were characterized at a research site (T3) 60km downwind of the city of Manaus, Brazil, in central Amazonia for one year (12 March 2014 to 3 March 2015). Particle hygroscopicity (κCCN) and mixing state were derived from the size-resolved CCN spectra, and the hygroscopicity of the organic component of the aerosol (κorg) was then calculated from κCCN and concurrent chemical composition measurements. The annual average κCCN increased from 0.13 at 75 nm to 0.17 at 171 nm, and the increase was largely due to an increase in sulfate volume fraction. Also, during both wet and dry seasons, κCCN, κorg, and particle composition under background conditions exhibited essentially no diel variations. The constant κorg of ~0.15 is consistent with the largely uniform and high O:C value (~0.8), indicating that the aerosols under background conditions are dominated by the aged regional aerosol particles consisting of highly oxygenated organic compounds. For air masses strongly influenced by urban pollution and/or local biomass burning, lower values of κorg and organic O:C atomic ratio were observed during night, due to accumulation of freshly emitted particles, dominated by primary organic aerosol (POA) with low hygroscopicity, within a shallow nocturnal boundary layer. The O:C, κorg, and κCCN increased from the early morning hours and peaked around noon, driven by the formation and aging of secondary organic aerosol (SOA) and dilution of POA emissions into a deeper boundary layer, while the development of the boundary layer, which leads to mixing with aged particles from the residual layer aloft, likely also contributed to the increases. The hygroscopicities associated with individual organic factors, derived from PMF analysis of AMS spectra, were estimated through multi-variable linear regression. For the SOA factors, the variation of the κ value with O:C agrees well with the linear relationship reported from earlier laboratory studies of SOA hygroscopicity. On the other hand, the variation in O:C of ambient aerosol organics is largely driven by the variation in the volume fractions of POA and SOA factors, which have very different O:C values. As POA factors have hygroscopicity values well below the linear relationship between SOA hygroscopicity and O:C, mixtures with different POA and SOA fractions exhibit a steeper slope for the increase of κorg with O:C, as observed during this and earlier field studies. Our finding helps better understand and reconcile the differences in the relationships between κorg and O:C observed in laboratory and field studies, therefore providing a basis for improved parameterization in global models, especially in a tropical context.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2015

Quantifying the local influence at a tall tower site in nocturnal conditions

The influence of the local terrestrial environment on nocturnal atmospheric CO 2 measurements at a 329-m television transmitter tower (and a component of a CO 2 monitoring network) was estimated in this paper with a tracer release experiment and a subsequent simulation of the releases. This was done to characterize the vertical transport of emissions from the surface to the uppermost tower level and how it is affected by atmospheric stability. The tracer release experiment was conducted over two nights in May of 2009 near the Department of Energy’s Savannah River Site (SRS) in South Carolina. Tracer was released on two contrasting nights—slightly stable and moderately stable—from several upwind surface locations. Measurements at the 329-m level on both nights indicate that tracer was able to mix vertically within a relatively short (~24 km) distance, implying that nocturnal stable conditions do not necessarily prevent vertical dispersion in the boundary layer and that CO 2 measurements at the tower are at least partly influenced by nearby emissions. A simulation of the tracer release is used to calculate the tower footprint on the two nights to estimate the degree to which the local domain affects the tower readings. The effect of the nocturnal boundary layer on the area sampled by the tower can be seen clearly, as the footprints were affected by changes in stability. Finally, the contribution of local sources to the measurements at the tower was minimal, however, suggesting that nocturnal concentrations at upper levels are contributed mostly by regional sources.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2015

Long-term measurements of submicrometer aerosol chemistry at the Southern Great Plains (SGP) using an Aerosol Chemical Speciation Monitor (ACSM)

In this study the long-term trends of non-refractory submicrometer aerosol (NR-PM1) composition and mass concentration measured by an Aerosol Chemical Speciation Monitor (ACSM) at the Atmospheric Radiation Measurement (ARM) program's Southern Great Plains (SGP) site are discussed. NR-PM1 data was recorded at ~30 min intervals over a period of 19 months between November 2010 and June 2012. Positive Matrix Factorization (PMF) was performed on the measured organic mass spectral matrix using a rolling window technique to derive factors associated with distinct sources, evolution processes, and physiochemical properties. The rolling window approach also allows us to capture the dynamic variations of the chemical properties in the organic aerosol (OA) factors over time. Three OA factors were obtained including two oxygenated OA (OOA) factors, differing in degrees of oxidation, and a biomass burning OA (BBOA) factor. Back trajectory analyses were performed to investigate possible sources of major NR-PM1 species at the SGP site. Organics dominated NR-PM1 mass concentration for the majority of the study with the exception of winter, when ammonium nitrate increases due to transport of precursor species from surrounding urban and agricultural areas and also due to cooler temperatures. Sulfate mass concentrations have little seasonal variation with mixed regional and local sources. In the spring BBOA emissions increase and are mainly associated with local fires. Isoprene and carbon monoxide emission rates were obtained by the Model of Emissions of Gases and Aerosols from Nature (MEGAN) and the 2011 U.S. National Emissions Inventory to represent the spatial distribution of biogenic and anthropogenic sources, respectively. The combined spatial distribution of isoprene emissions and air mass trajectories suggest that biogenic emissions from the southeast contribute to SOA formation at the SGP site during the summer.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2013

Campaign datasets for Two-Column Aerosol Project (TCAP)

This campaign was designed to provide a detailed set of observations with which to 1) perform radiative and cloud condensation nuclei (CCN) closure studies, 2) evaluate a new retrieval algorithm for aerosol optical depth (AOD) in the presence of clouds using passive remote sensing 3) extend a previously developed technique to investigate aerosol indirect effects, and 4) evaluate the performance of a detailed regional-scale model and a more parameterized global-scale model in simulating particle activation and AOD associated with the aging of anthropogenic aerosols. To meet these science objectives, the ARM Mobile Facility (AMF) and the Mobile Aerosol Observing System (MAOS) was deployed on Cape Cod, Massachusetts for a 12-month period starting in the summer of 2012 in order to quantify aerosol properties, radiation and cloud characteristics at a location subject to both clear- and cloudy- conditions, and clean- and polluted-conditions. These observations were supplemented by two aircraft intensive observation periods (IOPS), one in the summer and a second in the winter. Each IOP required two aircraft.

54 ENVIRONMENTAL SCIENCES↗