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Williams, Jonathan

Publications and source records attributed to Williams, Jonathan.

8 records
All sourcesNASA NTRSDOE OSTI
DOE OSTI2024

Lipid membrane remodeling and metabolic response during isobutanol and ethanol exposure in Zymomonas mobilis

Abstract Background Recent engineering efforts have targeted the ethanologenic bacterium Zymomonas mobilis for isobutanol production. However, significant hurdles remain due this organism’s vulnerability to isobutanol toxicity, adversely affecting its growth and productivity. The limited understanding of the physiological impacts of isobutanol on Z. mobilis constrains our ability to overcome these production barriers. Results We utilized a systems-level approach comprising LC–MS/MS-based lipidomics, metabolomics, and shotgun proteomics, to investigate how exposure to ethanol and isobutanol impact the lipid membrane composition and overall physiology of Z. mobilis . Our analysis revealed significant and distinct alterations in membrane phospholipid and fatty acid composition resulting from ethanol and isobutanol exposure. Notably, ethanol exposure increased membrane cyclopropane fatty acid content and expression of cyclopropane fatty acid (CFA) synthase. Surprisingly, isobutanol decreased cyclopropane fatty acid content despite robust upregulation of CFA synthase. Overexpression of the native Z. mobilis’ CFA synthase increased cyclopropane fatty acid content in all phospholipid classes and was associated with a significant improvement in growth rates in the presence of added ethanol and isobutanol. Heterologous expression of CFA synthase from Clostridium acetobutylicum resulted in a near complete replacement of unsaturated fatty acids with cyclopropane fatty acids, affecting all lipid classes. However, this did not translate to improved growth rates under isobutanol exposure. Correlating with its greater susceptibility to isobutanol, Z. mobilis exhibited more pronounced alterations in its proteome, metabolome, and overall cell morphology—including cell swelling and formation of intracellular protein aggregates —when exposed to isobutanol compared to ethanol. Isobutanol triggered a broad stress response marked by the upregulation of heat shock proteins, efflux transporters, DNA repair systems, and the downregulation of cell motility proteins. Isobutanol also elicited widespread dysregulation of Z. mobilis ’ primary metabolism evidenced by increased levels of nucleotide degradation intermediates and the depletion of biosynthetic and glycolytic intermediates. Conclusions This study provides a comprehensive, systems-level evaluation of the impact of ethanol and isobutanol exposure on the lipid membrane composition and overall physiology of Z. mobilis . These findings will guide engineering of Z. mobilis towards the creation of isobutanol-tolerant strains that can serve as robust platforms for the industrial production of isobutanol from lignocellulosic sugars.

09 BIOMASS FUELS↗
DOE OSTI2023

Drought re-routes soil microbial carbon metabolism towards emission of volatile metabolites in an artificial tropical rainforest

Drought impacts on microbial activity can alter soil carbon fate and lead to the loss of stored carbon to the atmosphere as CO 2 and volatile organic compounds (VOCs). Here we examined drought impacts on carbon allocation by soil microbes in the Biosphere 2 artificial tropical rainforest by tracking 13 C from position-specific 13 C-pyruvate into CO 2 and VOCs in parallel with multi-omics. During drought, efflux of 13 C-enriched acetate, acetone and C 4 H 6 O 2 (diacetyl) increased. These changes represent increased production and buildup of intermediate metabolites driven by decreased carbon cycling efficiency. Simultaneously, 13 C-CO 2 efflux decreased, driven by a decrease in microbial activity. However, the microbial carbon allocation to energy gain relative to biosynthesis was unchanged, signifying maintained energy demand for biosynthesis of VOCs and other drought-stress-induced pathways. Overall, while carbon loss to the atmosphere via CO 2 decreased during drought, carbon loss via efflux of VOCs increased, indicating microbially induced shifts in soil carbon fate.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2022

Reductive removal of pertechnetate and chromate by zero valent iron under variable ionic strength conditions

Radioactive technetium-99 (Tc) present in waste streams and subsurface plumes at legacy nuclear reprocessing sites worldwide poses potential risks to human health and the environment. This research comparatively evaluated efficiency of zero valent iron (ZVI) toward reductive removal of Tc(VII) in presence of Cr(VI) from NaCl and Na 2 SO 4 electrolyte solutions under aerobic conditions. In both electrolytes, anticorrosive Cr(VI) suppressed oxidation of ZVI at elevated concentrations resulting in the delay of initiation of Tc(VII) reduction to Tc(IV)). In the absence of Cr(VI), no such delay was observed in the analogous systems. At low ionic strength, retarded ZVI oxidation inhibited Tc(VII) reduction in part due to the competing thermodynamically more favorable reduction of Cr(VI) to Cr(III); this effect was particularly pronounced in the chloride medium at the ionic strength ? 0.1. Higher ionic strength favored reduction of both Tc(VII) and Cr(VI), which followed a second-order reaction rate in both electrolytes attributed to the more efficient iron oxidation as evident from x-ray diffraction and electron microscopy measurements. Magnetite was the primary iron oxide phase, and its higher fraction in the SO 4 2- solutions facilitated reductive removal of Tc(VII) and Cr(VI). In the Cl- matrix, Cr(VI) promoted further oxidation of magnetite as well as formation of chromite diminishing overall reductive capacity of this system and resulting in less effective removal of Tc(VII) compared to the SO 4 2- solutions.

12 MANAGEMENT OF RADIOACTIVE AND NON-RADIOACTIVE W↗
DOE OSTI2021

Can Bump Arrays Separate Particles from Turbulent Flows?

In this paper, we evaluate the hypothesis that bump arrays can be used to separate particles from turbulent flows entering the array. Microfluidic bump arrays are known for separating particles by size from laminar inlet flows. However, turbulent inlet flows have not been explored but become important as microfluidic bump arrays are scaled up to mesofluidic bump arrays. We find experimentally that particle separation is indeed effective at higher Reynolds numbers. These experimental findings portend industrial scale particle separation due to the higher flow rates they facilitate.

Pease, Leonard F.↗
DOE OSTI2020

Investigation into Reductive Separation of Tc-99 from Low Activity Waste Off-Gas Condensate by Zero Valent Iron Materials - 20311

This study is investigating the potential for reductive separation of technetium-99 (Tc) from off-gas condensate generated from vitrification of legacy tank waste at the Hanford Tank Waste Treatment and Immobilization Plant. Management of Tc is a high-priority activity for the U.S. Department of Energy (DOE) Office of Environmental Management (EM) complex, which must be addressed based on knowledge gaps and technology development needs outlined in the DOE-EM Technetium Management Program Plan [1]. Technetium is one of the main risk drivers in the permanent disposal of low activity waste (LAW) by vitrification at the Hanford Site due to its high volatility and only fractional incorporation into borosilicate glass. Volatilized Tc will be captured by an off-gas treatment system, and the current plan is to continuously recycle generated condensate back to the LAW glass melter feed. Off-gas recycling is effective at increasing Tc loading in the LAW glass, but it also disproportionately increases concentrations of sulfate, halides, and other volatile compounds impeding overall LAW processing leading to significantly greater waste glass volume requirements. Removal of Tc from secondary liquid waste offers an alternative disposal route to continuous off-gas recycling which may result in significant reduction of the volumes of LAW waste glass and substantial cost savings. The objective of this research funded by the DOE-EM Minority Serving Institutions Partnership Program (MSIPP) is to determine the suitability of zero valent iron (ZVI) as a separation technology to remove Tc from the off-gas condensate stream to minimize its recycle. While ZVI has been proposed for various remediation applications with Tc, it has not been studied for its suitability for removing Tc from the LAW off-gas condensate. The goal is to identify the optimal conditions for which Tc{sup (VII)} will be reduced to Tc{sup (IV)} species and incorporated into an iron matrix. This paper presents a programmatic overview of our evaluation of commercial ZVI materials for their efficiency towards Tc{sup (VII)} reductive removal from simplified off-gas simulant solutions under aerobic conditions. Tc concentrations in solutions were monitored for up to 30 days to determine efficiency and kinetics of reductive removal of Tc. The best performing candidate materials were selected for further experiments evaluating the effects of (1) variable ionic strength, (2) the presence of chromium and corrosive anions, and (3) ZVI aging on Tc{sup (VII)} reductive removal in batch experiments. (authors)

12 MANAGEMENT OF RADIOACTIVE AND NON-RADIOACTIVE W↗
NASA NTRS2009

The Bolocam Galactic Plane Survey

The Bolocam Galactic Plane Survey (BGPS) is a 1.1 millimeter continuum survey of the northern Galactic Plane made with Bolocam and the Caltech Submillimeter Observatory. The coverage totals 170 square degrees, comprised of a contiguous range from -10.5 deg is less than or equal to 90.5 deg, 0.5 deg is less than or equal to b is less than or equal to 0.5 deg, with extended coverage in b in selected regions, and four targeted regions in the outer Galaxy, including: IC1396, toward the Perseus arm at l is approximately 111 deg, W3/4/5, and Gem OB1. Depths of the maps range from 30 to 60 mJy beam (sup 1). Approximately 8,400 sources were detected and the maps and source catalog have been made publicly available. Millimeter-wave thermal dust emission reveals dense regions within molecular clouds, thus the BGPS serves as a database for studies of the dense interstellar medium and star formation within the Milky Way.

interstellar medium↗
NASA NTRS1993

OB associations and giant molecular clouds in the galaxy

Giant molecular clouds (GMC's) are the sites of all OB star formation in the Galaxy. These OB stars typically form in large associations and photoionize the surrounding gas, eventually destroying the clouds from which they were born. CO surveys have revealed the distribution of GMC's in the Galaxy, and radio observations provide data on the distribution of associations. These results are extrapolated to determine Galactic mean distribution functions of each and then combined to determine how GMC's and OB associations are correlated. The resulting probability distribution of luminosity given cloud mass implies that although most of the molecular mass of the Galaxy is in massive star forming complexes, a large number of clouds above which massive star formation is extremely likely and abundant and below which it is almost certainly absent.

Williams, Jonathan↗