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Ying Sun

Publications and source records attributed to Ying Sun.

Noise Reduction for Solar-Induced Fluorescence Retrievals Using Machine Learning and Principal Component Analysis: Simulations and Applications to GOME-2 Satellite Retrievals

We use a spectral-based approach that employs principal component analysis along with a relatively shallow artificial neural network (NN) to substantially reduce noise and other artifacts in terrestrial chlorophyll solar-induced fluorescence (SIF) retrievals. SIF is a very small emission at red and far-red wavelengths that is difficult to measure and is highly sensitive to random errors and systematic artifacts. Our approach relies upon an assumption that a trained NN can effectively reconstruct the total SIF signal from a relatively small number of leading principal components of the satellite-observed far-red radiance spectra without using information from the trailing modes that contain most of the random errors. We test the approach with simulated reflectance spectra produced with a full atmospheric and surface radiative transfer model using different observing and geophysical parameters and various noise levels. Resulting noisy and noise-reduced retrieved SIF values are compared with true values to assess performance. We then apply our noise reduction approach to SIF derived from two different satellite spectrometers. For evaluation, since the truth in this case is unknown, we compare SIF retrievals from two independent sensors with each other. We also compare the noise-reduced SIF temporal variations with those from an independent gross primary product (GPP) product that should display similar variations. Results show that our noise reduction approach improves capture of SIF seasonal and inter-annual variability. Our approach should be applicable to many noisy data products derived from spectral measurements. Our methodology does not replace the original retrieval algorithms; rather the original noisy retrievals are needed as the target for the NN training process.

noise reduction, solar-induced fluorescence, SIF, ↗

From Remotely-Sensed SIF to Ecosystem Structure, Function, and Service: Part I - Harnessing Theory

Solar-induced chlorophyll fluorescence (SIF) is a remotely sensed optical signal emitted during the light reactions of photosynthesis. The past two decades have witnessed an explosion in availability of SIF data at increasingly higher spatial and temporal resolutions, sparking applications in diverse research sectors (e.g., ecology, agriculture, hydrology, climate, and socioeconomics). These applications must deal with complexities caused by tremendous variations in scale and the impacts of interacting and superimposing plant physiology and three-dimensional vegetation structure on the emission and scattering of SIF. At present, these complexities have not been overcome. To advance future research, the two companion reviews aim to (1) develop an analytical framework for inferring terrestrial vegetation structures and function that are tied to SIF emission, (2) synthesize progress and identify challenges in SIF research via the lens of multi-sector applications, and (3) map out actionable solutions to tackle these challenges and offer our vision for research priorities over the next 5–10 years based on the proposed analytical framework. This paper is the first of the two companion reviews, and theory oriented. It introduces a theoretically rigorous yet practically applicable analytical framework. Guided by this framework, we offer theoretical perspectives on three overarching questions: (1) The forward (mechanism) question—How are the dynamics of SIF affected by terrestrial ecosystem structure and function? (2) The inference question: What aspects of terrestrial ecosystem structure, function, and service can be reliably inferred from remotely sensed SIF and how? (3) The innovation question: What innovations are needed to realize the full potential of SIF remote sensing for real-world applications under climate change? The analytical framework elucidates that process complexity must be appreciated in inferring ecosystem structure and function from the observed SIF; this framework can serve as a diagnosis and inference tool for versatile applications across diverse spatial and temporal scales.

carbon fluxes↗

Improving the Representation of Land Surface Processes Using the Data Assimilation Research Testbed (DART)

The land surface is a critical part of the earth system as processes related to water, carbon, energy and nitrogen cycling have important implications for climate forcing, air quality, water availability and seasonal atmospheric forecasting. Despite advances in land surface modeling, land surface model performance is often limited because of errors related to initial and boundary conditions, model structure, and parameters. Data assimilation (DA) techniques combined with an expanding network of earth system observations present an opportunity to reduce these errors and improve simulations. Here, we emphasize the implementation of tools and approaches to overcome challenges related to land DA to constrain carbon and water cycling. In particular, we discuss the implementation of adaptive inflation to modify ensemble spread in response to time-varying networks of gridded observations. We also discuss methods to generate ensemble spread through boundary condition (meteorology) forcing that can be applied to site-level applications. Next, we describe the application of vertical localization upon surface soil moisture observations, and forward operators specifically designed for the assimilation of snow and solar-induced fluorescence observations. Finally, we discuss the potential benefit of a quantile conserving filter used to update bounded quantities (state or parameter values).

Brett Raczka↗

Machine learning based noise reduction for satellite products: application to solar-induced fluorescence retrievals using simulated and real data

In the past two decades, global satellite measurements of terrestrial chlorophyll solar-induced fluorescence (SIF) have been used widely for a number of different applications related to physiology, phenology, and productivity of plants. However, SIF retrievals are inherently noisy due to the relatively small SIF spectral signature in comparison with observational noise. In this work, we examine how a spectral-based approach that employs principal component analysis along with a relatively shallow artificial neural network can be used to reduce noise and other artifacts in satellite level 2 (L2) products. We first apply the approach in a controlled environment in which radiance spectra are simulated with a full atmospheric and surface radiative transfer model for different scenarios including various SIF values that are known. Various levels of noise can be added to the simulated spectra. Resulting noisy and noise-reduced SIF retrievals are compared with the true values to assess performance. We then apply the noise reduction approach to real SIF derived from instruments flying on meteorological satellites. The results are evaluated by comparing SIF retrievals from different platforms with each other and with other independent data sets, showing enhanced capability to capture seasonal and interannual variability in SIF.

Chlorophyll fluorescence↗

Acoustic Insights into Flow Condensation Mechanisms

Two-phase thermal management systems, with both boiling and condensation processes, offer great potential and heat transfer coefficients that are orders of magnitude higher than traditional single-phase systems. However, two-phase flows can suffer from a wide range of interfacial instabilities leading to significant thermal performance degradation. In this study, we aim to detect regime transitions and characterize dominating physical mechanisms of flow condensation, such as turbulent diffusion in annular liquid film and interfacial waves, using an integrated system of acoustic, modal, and optical sensing techniques and thermofluidic characterizations. A wideband acoustic emissions sensor and high-sensitivity accelerometer are utilized to capture acoustic and vibrational signatures that signal the onset of liquid film formation and interfacial waves during flow pattern transitions. Compared to optical imaging, wideband acoustic emission sensing allows for higher sampling rates to capture high-frequency interface oscillations critical to the flow regime transitions and works well even for condensation in opaque tubes. Acoustic features (e.g., amplitude, frequency, energy, duration) are correlated with thermofluidic processes (e.g., capillary flows, turbulent flows, boiling, condensation). By relating thermal performance metrics with these dynamic signatures in acoustic and modal regimes, we explore the ability to probe and monitor critical flow regime transitions and transport efficiency in flow condensation.

Acoustic Modal Regimes↗