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Zhang, Ping

Publications and source records attributed to Zhang, Ping.

At least 19 records
All sourcesNASA NTRSDOE OSTI
DOE OSTI2024

Environmental stress mediates groundwater microbial community assembly

Community assembly describes how different ecological processes shape microbial community composition and structure. How environmental factors impact community assembly remains elusive. Here we sampled microbial communities and >200 biogeochemical variables in groundwater at the Oak Ridge Field Research Center, a former nuclear waste disposal site, and developed a theoretical framework to conceptualize the relationships between community assembly processes and environmental stresses. We found that stochastic assembly processes were critical (>60% on average) in shaping community structure, but their relative importance decreased as stress increased. Dispersal limitation and ‘drift’ related to random birth and death had negative correlations with stresses, whereas the selection processes leading to dissimilar communities increased with stresses, primarily related to pH, cobalt and molybdenum. Assembly mechanisms also varied greatly among different phylogenetic groups. As a result, our findings highlight the importance of microbial dispersal limitation and environmental heterogeneity in ecosystem restoration and management.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2022

Discrete scale invariance of the quasi-bound states at atomic vacancies in a topological material

Recently, log-periodic quantum oscillations have been detected in the topological materials zirconium pentatelluride (ZrTe 5 ) and hafnium pentatelluride (HfTe 5 ), displaying an intriguing discrete scale invariance (DSI) characteristic. In condensed materials, the DSI is considered to be related to the quasi-bound states formed by massless Dirac fermions with strong Coulomb attraction, offering a feasible platform to study the long-pursued atomic-collapse phenomenon. Here, we demonstrate that a variety of atomic vacancies in the topological material HfTe 5 can host the geometric quasi-bound states with a DSI feature, resembling an artificial supercritical atom collapse. The density of states of these quasi-bound states is enhanced, and the quasi-bound states are spatially distributed in the “orbitals” surrounding the vacancy sites, which are detected and visualized by low-temperature scanning tunneling microscope/spectroscopy. By applying the perpendicular magnetic fields, the quasi-bound states at lower energies become wider and eventually invisible; meanwhile, the energies of quasi-bound states move gradually toward the Fermi energy (E F ). These features are consistent with the theoretical prediction of a magnetic field–induced transition from supercritical to subcritical states. The direct observation of geometric quasi-bound states sheds light on the deep understanding of the DSI in quantum materials.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗
DOE OSTI2022

Transverse oscillating bubble enhanced laser-driven betatron X-ray radiation generation

Abstract Ultrafast high-brightness X-ray pulses have proven invaluable for a broad range of research. Such pulses are typically generated via synchrotron emission from relativistic electron bunches using large-scale facilities. Recently, significantly more compact X-ray sources based on laser-wakefield accelerated (LWFA) electron beams have been demonstrated. In particular, laser-driven sources, where the radiation is generated by transverse oscillations of electrons within the plasma accelerator structure (so-called betatron oscillations) can generate highly-brilliant ultrashort X-ray pulses using a comparably simple setup. Here, we experimentally demonstrate a method to markedly enhance the parameters of LWFA-driven betatron X-ray emission in a proof-of-principle experiment. We show a significant increase in the number of generated photons by specifically manipulating the amplitude of the betatron oscillations by using our novel Transverse Oscillating Bubble Enhanced Betatron Radiation scheme. We realize this through an orchestrated evolution of the temporal laser pulse shape and the accelerating plasma structure. This leads to controlled off-axis injection of electrons that perform large-amplitude collective transverse betatron oscillations, resulting in increased radiation emission. Our concept holds the promise for a method to optimize the X-ray parameters for specific applications, such as time-resolved investigations with spatial and temporal atomic resolution or advanced high-resolution imaging modalities, and the generation of X-ray beams with even higher peak and average brightness.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗
DOE OSTI2021

Type-II Dirac cones and electron-phonon interaction in monolayer biphenylene from first-principles calculations

In this work, we report a first-principles investigation of electronic structure, topological bands, and electron-phonon interactions in metallic biphenylene sheets. Biphenylene is a recently synthesized sp 2 -bonded carbon allotrope. We find coupling of electrons at the Fermi surface to very high frequency carbon-derived phonons, analogous to superconducting MgB 2 . This leads to low-temperature weak coupling superconductivity due to an unusual combination of exceptionally large logarithmically averaged phonon frequency ω log =1369 K and moderate electron-phonon coupling. The electronic structure shows a two-band Fermi surface dominated by C p z orbitals and a pair of type-II tilted Dirac cones along the Γ-Y line at the Brillouin zone boundary. Berry curvature and edge-state calculations show that monolayer biphenylene is a two-dimensional $\mathbb{Z}$ 2 topological material. Thus, monolayer biphenylene is predicted to be a topological superconductor based on C p orbitals and high-frequency phonons.

75 CONDENSED MATTER PHYSICS, SUPERCONDUCTIVITY AND↗
DOE OSTI2020

Structural analyses of the PKA RIIβ holoenzyme containing the oncogenic DnaJB1-PKAc fusion protein reveal protomer asymmetry and fusion-induced allosteric perturbations in fibrolamellar hepatocellular carcinoma

When the J-domain of the heat shock protein DnaJB1 is fused to the catalytic (C) subunit of cAMP-dependent protein kinase (PKA), replacing exon 1, this fusion protein, J-C subunit (J-C), becomes the driver of fibrolamellar hepatocellular carcinoma (FL-HCC). Here, we use cryo-electron microscopy (cryo-EM) to characterize J-C bound to RIIβ, the major PKA regulatory (R) subunit in liver, thus reporting the first cryo-EM structure of any PKA holoenzyme. We report several differences in both structure and dynamics that could not be captured by the conventional crystallography approaches used to obtain prior structures. Most striking is the asymmetry caused by the absence of the second cyclic nucleotide binding (CNB) domain and the J-domain in one of the RIIβ:J-C protomers. Using molecular dynamics (MD) simulations, we discovered that this asymmetry is already present in the wild-type (WT) RIIβ 2 C 2 but had been masked in the previous crystal structure. This asymmetry may link to the intrinsic allosteric regulation of all PKA holoenzymes and could also explain why most disease mutations in PKA regulatory subunits are dominant negative. The cryo-EM structure, combined with small-angle X-ray scattering (SAXS), also allowed us to predict the general position of the Dimerization/Docking (D/D) domain, which is essential for localization and interacting with membrane-anchored A-Kinase-Anchoring Proteins (AKAPs). This position provides a multivalent mechanism for interaction of the RIIβ holoenzyme with membranes and would be perturbed in the oncogenic fusion protein. The J-domain also alters several biochemical properties of the RIIβ holoenzyme: It is easier to activate with cAMP, and the cooperativity is reduced. These results provide new insights into how the finely tuned allosteric PKA signaling network is disrupted by the oncogenic J-C subunit, ultimately leading to the development of FL-HCC.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2020

Small and mighty: adaptation of superphylum Patescibacteria to groundwater environment drives their genome simplicity

The newly defined superphylum Patescibacteria such as Parcubacteria (OD1) and Microgenomates (OP11) has been found to be prevalent in groundwater, sediment, lake, and other aquifer environments. Recently increasing attention has been paid to this diverse superphylum including > 20 candidate phyla (a large part of the candidate phylum radiation, CPR) because it refreshed our view of the tree of life. However, adaptive traits contributing to its prevalence are still not well known. Results Here, we investigated the genomic features and metabolic pathways of Patescibacteria in groundwater through genome-resolved metagenomics analysis of >600 Gbp sequence data. We observed that, while the members of Patescibacteria have reduced genomes (~ 1 Mbp) exclusively, functions essential to growth and reproduction such as genetic information processing were retained. Surprisingly, they have sharply reduced redundant and nonessential functions, including specific metabolic activities and stress response systems. The Patescibacteria have ultra-small cells and simplified membrane structures, including flagellar assembly, transporters, and two-component systems. Despite the lack of CRISPR viral defense, the bacteria may evade predation through deletion of common membrane phage receptors and other alternative strategies, which may explain the low representation of prophage proteins in their genomes and lack of CRISPR. By establishing the linkages between bacterial features and the groundwater environmental conditions, our results provide important insights into the functions and evolution of this CPR group.

59 BASIC BIOLOGICAL SCIENCES↗
NASA NTRS2019

Overview of JPSS VIIRS Geometric Calibration and Validation

The presentation stressed the importance of a pre-launch test plan and a post-launch CalVal plan in the geometric aspects of instrument focal length, spatial responses, band-to-band registration, pointing, geolocation and long-term monitoring.

VIIRS↗
NASA NTRS2019

Thirty-Six Combined Years of MODIS Geolocation Trending

Two Moderate Resolution Imaging Spectroradiometer (MODIS) sensors have been in operations for more than 19 and 17 years (thus 36 combined years) as part of NASA's Earth Observing System (EOS) on the Terra platform that was launched in December 1999 and on the Aqua platform that was launched in May 2002, respectively. Accurate geolocation is a critical element needed for accurate retrieval of global biogeophysical parameters. In this paper, we describe the latest trends in the continuously improved MODIS geolocation accuracy in Collection-5 (C5), C6 and C6.1 re-processing and forward-processing data streams. We improved geolocation accuracy in the re-processed data and corrected for geolocation biases found in forward-processed data, including those caused by operations such as the stop-go-stop status of the Advanced Microwave Scanning Radiometer for EOS (AMSR-E) instrument on the Aqua platform. We discuss scan-toscan underlaps near nadir over the equator regions that was discovered in checking the non-underlapping requirement in the Visible Infrared Imaging Radiometer Suite (VIIRS) based on trending parameters from the actual Suomi National Polar-orbiting Partnership (S-NPP) satellite orbit. The underlaps are closely tied to instrument effective focal length that is measured from on-orbit data using a technique we recently developed. We also discuss potential improvements for the upcoming C7 re-processing.

ground control point↗
NASA NTRS2018

JPSS-1/NOAA-20 VIIRS Early On-Orbit Geometric Performance

The first NOAA/NASA Join Polar Satellite System (JPSS-1) satellite was successfully launched on November 18, 2017,becoming NOAA-20. Instruments on-board the NOAA-20 satellite include the Visible Infrared Imaging RadiometerSuite (VIIRS). This instrument is the second build of VIIRS, with the first flight instrument on-board NASA/NOAASuomi National Polar-orbiting Partnership (SNPP) satellite operating since October 2011. The purpose of these VIIRSinstruments is to continue the long-term measurements of biogeophysical variables for multiple applications includingweather forecasting, rapid response and climate research. The geometric performance of VIIRS is essential to retrievingaccurate biogeophysical variables. This paper describes the early on-orbit geometric performance of the JPSS-1/NOAA-20 VIIRS. It first discusses the on-orbit orbit and attitude performance, a key input needed for accurate geolocation. Itthen discusses the on-orbit geometric characterization and calibration of VIIRS and an initial assessment of thegeometric accuracy. It follows with a discussion of an improvement in the instrument geometric model that correctssmall geometrical artifacts that appear in the along-scan direction. Finally, this paper discusses on-orbit measurements ofthe focal length and the impact of this on the scan-to-scan underlap/overlap.

Lin, Guoqing↗
NASA NTRS2018

A Method for Mapping Future Urbanization in the United States

Cities are poised to absorb additional people. Their sustainability, or ability to accommodate a population increase without depleting resources or compromising future growth, depends on whether they harness the efficiency gains from urban land management. Population is often projected as a bulk national number without details about spatial distribution. We use Landsat and population data in a methodology to project and map U.S. urbanization for the year 2020 and document its spatial pattern. This methodology is important to spatially disaggregate projected population and assist land managers to monitor land use, assess infrastructure and distribute resources. We found the U.S. west coast urban areas to have the fastest population growth with relatively small land consumption resulting in future decrease in per capita land use. Except for Miami (FL), most other U.S. large urban areas, especially in the Midwest, are growing spatially faster than their population and inadvertently consuming land needed for ecosystem services. In large cities, such as New York, Chicago, Houston and Miami, land development is expected more in suburban zones than urban cores. In contrast, in Los Angeles land development within the city core is greater than in its suburbs.

Bounoua, Lahouari↗