Network Analysis of Rodent Transcriptomes in Spaceflight

Ramachandran, Maya; Fogle, Homer; Costes, Sylvain

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NASA NTRS · 20180000683

Network Analysis of Rodent Transcriptomes in Spaceflight

Ramachandran, Maya·Fogle, Homer·Costes, Sylvain

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Abstract

Network analysis methods leverage prior knowledge of cellular systems and the statistical and conceptual relationships between analyte measurements to determine gene connectivity. Correlation and conditional metrics are used to infer a network topology and provide a systems-level context for cellular responses. Integration across multiple experimental conditions and omics domains can reveal the regulatory mechanisms that underlie gene expression. GeneLab has assembled rich multi-omic (transcriptomics, proteomics, epigenomics, and epitranscriptomics) datasets for multiple murine tissues from the Rodent Research 1 (RR-1) experiment. RR-1 assesses the impact of 37 days of spaceflight on gene expression across a variety of tissue types, such as adrenal glands, quadriceps, gastrocnemius, tibalius anterior, extensor digitorum longus, soleus, eye, and kidney. Network analysis is particularly useful for RR-1 -omics datasets because it reinforces subtle relationships that may be overlooked in isolated analyses and subdues confounding factors. Our objective is to use network analysis to determine potential target nodes for therapeutic intervention and identify similarities with existing disease models. Multiple network algorithms are used for a higher confidence consensus.

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Ramachandran, Maya, Fogle, Homer, Costes, Sylvain. 2017-10-25. Network Analysis of Rodent Transcriptomes in Spaceflight. https://ntrs.nasa.gov/citations/20180000683

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