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DOE OSTI · 1625594

A computational framework for ptychographic reconstructions

Enders, B.·Thibault, P.
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Abstract

Ptychography is now a well-established X-ray microscopy tool for synchrotron end-stations equipped with a scanning stage and a pixelated detector. Ptychographic phasing algorithms use information from coherent diffraction to deliver quantitative images of the specimen at a resolution higher than the scanning resolution. These algorithms have traditionally been implemented in software on a per-instrument basis in various degrees of user-friendliness and sophistication. Here, we present Ptypy, a ptychography software written with the intention to serve as a framework across the diverse sets of available instruments and usage cases. A distinctive feature of the software is its formalism, which provides a convenient abstraction of the physical model, thus allowing for concise algorithmic implementations and portability across set-up geometries. We give an overview of the supported usage cases, explain the abstraction layer and design principles, and provide a step-by-step guide describing how an algorithm may be realized in a concise and readable manner. The software capabilities are illustrated with reconstructions from visible light and X-ray data.

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71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSICS97 MATHEMATICS AND COMPUTINGPythonX-raydiffractionmicroscopyphase retrievaptychography

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BibTeXRIS

Enders, B., Thibault, P.. 2016-12-01. A computational framework for ptychographic reconstructions. https://doi.org/10.1098/rspa.2016.0640

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