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DOE OSTI · 1781663

Counting mRNA copies in intact bacterial cells by fluctuation localization imaging-based fluorescence in situ hybridization (fliFISH)

Abstract

A method for measuring mRNA copies in intact bacterial cells by fluctuation localization imaging-based fluorescence in situ hybridization (fliFISH) is presented. Unlike conventional single molecule FISH, where the presence of a transcript is determined by fluorescence intensity, fliFISH relies on On-Off duty cycles of photo-switching dyes to set a predetermined threshold for distinguishing true signals from background noise. The method provides a quantitative approach for detecting and counting true mRNA copies and rejecting false signals with high accuracy.

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BibTeXRIS

Hu, Dehong, Cui, Yi, Markillie, Lye Meng, Chrisler, William B., Wang, Qian, Hatzenpichler, Roland S., Orr, Galya. 2021-02-13. Counting mRNA copies in intact bacterial cells by fluctuation localization imaging-based fluorescence in situ hybridization (fliFISH). https://www.osti.gov/biblio/1781663

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