Designing efficient genetic code expansion in Bacillus subtilis to gain biological insights

Stork, Devon A.; Squyres, Georgia R. (ORCID:0000000287172897); Kuru, Erkin; Gromek, Katarzyna A.; Rittichier, Jonathan; Jog, Aditya; Burton, Briana M. (ORCID:0000000264448213); Church, George M.; Garner, Ethan C. (ORCID:0000000301413555); Kunjapur, Aditya M. (ORCID:0000000168699530)

doi:10.1038/s41467-021-25691-4

DOE OSTI · 1819957

Designing efficient genetic code expansion in Bacillus subtilis to gain biological insights

Stork, Devon A.·Squyres, Georgia R. (ORCID:0000000287172897)·Kuru, Erkin·Gromek, Katarzyna A.·Rittichier, Jonathan·Jog, Aditya·Burton, Briana M. (ORCID:0000000264448213)·Church, George M.·Garner, Ethan C. (ORCID:0000000301413555)·Kunjapur, Aditya M. (ORCID:0000000168699530)

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Abstract

Abstract Bacillus subtilis is a model gram-positive bacterium, commonly used to explore questions across bacterial cell biology and for industrial uses. To enable greater understanding and control of proteins in B. subtilis , here we report broad and efficient genetic code expansion in B. subtilis by incorporating 20 distinct non-standard amino acids within proteins using 3 different families of genetic code expansion systems and two choices of codons. We use these systems to achieve click-labelling, photo-crosslinking, and translational titration. These tools allow us to demonstrate differences between E. coli and B. subtilis stop codon suppression, validate a predicted protein-protein binding interface, and begin to interrogate properties underlying bacterial cytokinesis by precisely modulating cell division dynamics in vivo. We expect that the establishment of this simple and easily accessible chemical biology system in B. subtilis will help uncover an abundance of biological insights and aid genetic code expansion in other organisms.

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59 BASIC BIOLOGICAL SCIENCES Bacterial synthetic biology Cellular microbiology Science & Technology - Other Topics Synthetic biology

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Stork, Devon A., Squyres, Georgia R. (ORCID:0000000287172897), Kuru, Erkin, Gromek, Katarzyna A., Rittichier, Jonathan, Jog, Aditya, Burton, Briana M. (ORCID:0000000264448213), Church, George M., Garner, Ethan C. (ORCID:0000000301413555), Kunjapur, Aditya M. (ORCID:0000000168699530). 2021-09-14. Designing efficient genetic code expansion in Bacillus subtilis to gain biological insights. https://doi.org/10.1038/s41467-021-25691-4

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