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DOE OSTI · 1891478

EcoPLOT: dynamic analysis of biogeochemical data

Sanchez, Christopher D.·Brown, J. Benjamin·Gal-Oz, Omree·Singer, Esther
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Abstract

Motivation: We have created EcoPLOT (parameterized linkage of omics-driven technologies), a web-app for the dynamic, interactive analysis of biogeochemical datasets that combines state-of-the-art analysis tools to statistically and graphically explore environmental, geochemical and microbiome datasets. Using the iterative random forest, a machine learning algorithm, EcoPLOT allows for the de novo discovery of drivers which exhibit significant impact on plant, microbial or soil dynamics. Availability and implementation: EcoPLOT is built entirely within the R language. It can be accessed through any system where R is installed, including Windows, Mac and most Linux systems. EcoPLOT is free to use and can be accessed at https://github.com/cdsanchez18/EcoPLOT.

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Sanchez, Christopher D., Brown, J. Benjamin, Gal-Oz, Omree, Singer, Esther. 2021-03-01. EcoPLOT: dynamic analysis of biogeochemical data. https://doi.org/10.1093/bioinformatics%2Fbtab842

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