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DOE OSTI · 3003767

From pixels to patterns: Coupling Optical Coherence Tomography and machine learning for monitoring coastal wetland root systems

Hassan, Mohamed O. [Texas A & M Univ., College Station, TX (United States)]·Truong, Aramy X. [Pacific Northwest National Laboratory (PNNL), Richland, WA (United States)]·Mudunuru, Maruti K. [Pacific Northwest National Laboratory (PNNL), Richland, WA (United States)]·Butler, Leslie G. [Louisiana State Univ., Baton Rouge, LA (United States)] (ORCID:000000031547608X)·Rovai, Andre [Louisiana State Univ., Baton Rouge, LA (United States); Smithsonian Institute, Washington, DC (United States)]·Larimer, Curtis J. [Pacific Northwest National Laboratory (PNNL), Richland, WA (United States)] (ORCID:0000000166345384)·Daddona, Joseph D. [Pacific Northwest National Laboratory (PNNL), Richland, WA (United States)]·Ahkami, Amir Hossein [Pacific Northwest National Laboratory (PNNL), Richland, WA (United States)]·Bardhan, Jaydeep P. [Pacific Northwest National Laboratory (PNNL), Richland, WA (United States)]·Varga, Tamas [Pacific Northwest National Laboratory (PNNL), Richland, WA (United States)] (ORCID:000000025492866X)·Stratton, Kelly G. [Pacific Northwest National Laboratory (PNNL), Richland, WA (United States)] (ORCID:000000025492866X)·Karra, Satish [Pacific Northwest National Laboratory (PNNL), Richland, WA (United States)]·Twilley, Robert [Louisiana State Univ., Baton Rouge, LA (United States)]·Jafari, Navid H. [Texas A & M Univ., College Station, TX (United States)]
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Abstract

Coastal wetlands are crucial in shoreline stabilization, carbon sequestration, and storm protection. Yet, due to limitations in traditional destructive sampling techniques, the belowground biomass (live root mass) and necromass (dead and decaying roots) remain difficult to assess in coastal wetlands, limiting our understanding on coastal resilience, nutrient cycling, and soil structure. This study employs Optical Coherence Tomography (OCT) as a high-resolution imaging technique to analyze root biomass and necromass in the Terrebonne Basin, Louisiana. A Random Forest (RF) model was developed to classify root health states based on OCT-derived features, achieving an accuracy of 70% in distinguishing live from dead root segments. The results demonstrate that OCT, combined with ML, offers a promising novel approach to root analysis, providing fine-scale insights into root morphology and decay patterns that are not easily captured by conventional methods. This research lays the foundation for future integration of OCT with complementary imaging modalities such as X-ray Computed Tomography (XCT) and advanced ML algorithms to enhance classification accuracy and scalability. Future work aims to expand the dataset diversity across different wetland types and apply the methodology for large-scale, repeatable assessments of root biomass turnover and accumulation, with important implications for wetland monitoring, conservation, and restoration under changing environmental conditions.

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AI/MLClassificationCoastal wetlandsMLOCTOptical Coherence Tomography (OCT)RFRoot biomass

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BibTeXRIS

Hassan, Mohamed O. [Texas A & M Univ., College Station, TX (United States)], Truong, Aramy X. [Pacific Northwest National Laboratory (PNNL), Richland, WA (United States)], Mudunuru, Maruti K. [Pacific Northwest National Laboratory (PNNL), Richland, WA (United States)], Butler, Leslie G. [Louisiana State Univ., Baton Rouge, LA (United States)] (ORCID:000000031547608X), Rovai, Andre [Louisiana State Univ., Baton Rouge, LA (United States); Smithsonian Institute, Washington, DC (United States)], Larimer, Curtis J. [Pacific Northwest National Laboratory (PNNL), Richland, WA (United States)] (ORCID:0000000166345384), Daddona, Joseph D. [Pacific Northwest National Laboratory (PNNL), Richland, WA (United States)], Ahkami, Amir Hossein [Pacific Northwest National Laboratory (PNNL), Richland, WA (United States)], Bardhan, Jaydeep P. [Pacific Northwest National Laboratory (PNNL), Richland, WA (United States)], Varga, Tamas [Pacific Northwest National Laboratory (PNNL), Richland, WA (United States)] (ORCID:000000025492866X), Stratton, Kelly G. [Pacific Northwest National Laboratory (PNNL), Richland, WA (United States)] (ORCID:000000025492866X), Karra, Satish [Pacific Northwest National Laboratory (PNNL), Richland, WA (United States)], Twilley, Robert [Louisiana State Univ., Baton Rouge, LA (United States)], Jafari, Navid H. [Texas A & M Univ., College Station, TX (United States)]. 2025-08-26. From pixels to patterns: Coupling Optical Coherence Tomography and machine learning for monitoring coastal wetland root systems. https://doi.org/10.1016/j.scitotenv.2025.180315

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