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DOE OSTI · 3019677

Establishing Data Analysis Pipeline for Bulk ATAC-Seq Datasets

Leiser, Owen P. [Pacific Northwest National Laboratory (PNNL), Richland, WA (United States)] (ORCID:0000000311905596)·Carlson, Emma E. [Pacific Northwest National Laboratory (PNNL), Richland, WA (United States)]·Flores, Javier E. [Pacific Northwest National Laboratory (PNNL), Richland, WA (United States)]·Lin, Andy [Pacific Northwest National Laboratory (PNNL), Richland, WA (United States)] (ORCID:000000030072612X)·Chiang, Tony Y. [Pacific Northwest National Laboratory (PNNL), Richland, WA (United States)]·Sims, Amy C. [Pacific Northwest National Laboratory (PNNL), Richland, WA (United States)]
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Abstract

We developed an analysis pipeline for transposase-accessible chromatin sequencing (ATAC-Seq) data derived from bulk samples, which brings together publicly available R packages in addition to command-line tools designed for analysis of bulk ATAC-Seq data and can be run on any computer running a Linux-like operating system such as Ubuntu or Apple OSX.

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BibTeXRIS

Leiser, Owen P. [Pacific Northwest National Laboratory (PNNL), Richland, WA (United States)] (ORCID:0000000311905596), Carlson, Emma E. [Pacific Northwest National Laboratory (PNNL), Richland, WA (United States)], Flores, Javier E. [Pacific Northwest National Laboratory (PNNL), Richland, WA (United States)], Lin, Andy [Pacific Northwest National Laboratory (PNNL), Richland, WA (United States)] (ORCID:000000030072612X), Chiang, Tony Y. [Pacific Northwest National Laboratory (PNNL), Richland, WA (United States)], Sims, Amy C. [Pacific Northwest National Laboratory (PNNL), Richland, WA (United States)]. 2026-01-28. Establishing Data Analysis Pipeline for Bulk ATAC-Seq Datasets. https://doi.org/10.2172/3019677

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