Integrase-on-Demand

Williams, Kelly [Sandia National Lab. (SNL-CA), Livermore, CA (United States); Sandia National Lab. (SNL-NM), Albuquerque, NM (United States); Sandia National Laboratories (SNL), Albuquerque, NM, and Livermore, CA (United States)]; Mageeney, Catherine [Sandia National Lab. (SNL-CA), Livermore, CA (United States); Sandia National Lab. (SNL-NM), Albuquerque, NM (United States); Sandia National Laboratories (SNL), Albuquerque, NM, and Livermore, CA (United States)]; Torrance, Ellis [Sandia National Lab. (SNL-CA), Livermore, CA (United States); Sandia National Lab. (SNL-NM), Albuquerque, NM (United States); Sandia National Laboratories (SNL), Albuquerque, NM, and Livermore, CA (United States)]; McClain, Hannah [Sandia National Lab. (SNL-CA), Livermore, CA (United States); Sandia National Lab. (SNL-NM), Albuquerque, NM (United States); Sandia National Laboratories (SNL), Albuquerque, NM, and Livermore, CA (United States)]

doi:10.11578/dc.20250805.3

DOE OSTI · code-160074

Integrase-on-Demand

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Abstract

SAND2025-07449O Integrase-on-Demand is a software tool that allows users to identify regions in genomic sequences where genetic material can be integrated with high probability. It uses a database of integrases and their DNA attachment sites to search against any genomic sequence, producing a list of open sites, the integrase sequence, and the source of the genomic island. The program requires MASH software to be available on the system. It consists of a main script and a precomputed input file, with a taxonomy mode that searches closely related genomes and a search mode that looks for identical attachment site matches in the integrase/attachment input file. Sandia National Laboratories is a multimission laboratory managed and operated by National Technology & Engineering Solutions of Sandia, LLC, a wholly owned subsidiary of Honeywell International Inc., for the U.S. Department of Energy’s National Nuclear Security Administration under contract DE-NA0003525.

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Williams, Kelly [Sandia National Lab. (SNL-CA), Livermore, CA (United States); Sandia National Lab. (SNL-NM), Albuquerque, NM (United States); Sandia National Laboratories (SNL), Albuquerque, NM, and Livermore, CA (United States)], Mageeney, Catherine [Sandia National Lab. (SNL-CA), Livermore, CA (United States); Sandia National Lab. (SNL-NM), Albuquerque, NM (United States); Sandia National Laboratories (SNL), Albuquerque, NM, and Livermore, CA (United States)], Torrance, Ellis [Sandia National Lab. (SNL-CA), Livermore, CA (United States); Sandia National Lab. (SNL-NM), Albuquerque, NM (United States); Sandia National Laboratories (SNL), Albuquerque, NM, and Livermore, CA (United States)], McClain, Hannah [Sandia National Lab. (SNL-CA), Livermore, CA (United States); Sandia National Lab. (SNL-NM), Albuquerque, NM (United States); Sandia National Laboratories (SNL), Albuquerque, NM, and Livermore, CA (United States)]. 2025-05-15. Integrase-on-Demand. https://doi.org/10.11578/dc.20250805.3

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