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At least 181 records · Page 10

Research in Computational Astrobiology

We present results from several projects in the new field of computational astrobiology, which is devoted to advancing our understanding of the origin, evolution and distribution of life in the Universe using theoretical and computational tools. We have developed a procedure for calculating long-range effects in molecular dynamics using a plane wave expansion of the electrostatic potential. This method is expected to be highly efficient for simulating biological systems on massively parallel supercomputers. We have perform genomics analysis on a family of actin binding proteins. We have performed quantum mechanical calculations on carbon nanotubes and nucleic acids, which simulations will allow us to investigate possible sources of organic material on the early earth. Finally, we have developed a model of protobiological chemistry using neural networks.

Chaban, Galina↗

Technology for national asset storage systems

An industry-led collaborative project, called the National Storage Laboratory, was organized to investigate technology for storage systems that will be the future repositories for our national information assets. Industry participants are IBM Federal Systems Company, Ampex Recording Systems Corporation, General Atomics DISCOS Division, IBM ADSTAR, Maximum Strategy Corporation, Network Systems Corporation, and Zitel Corporation. Industry members of the collaborative project are funding their own participation. Lawrence Livermore National Laboratory through its National Energy Research Supercomputer Center (NERSC) will participate in the project as the operational site and the provider of applications. The expected result is an evaluation of a high performance storage architecture assembled from commercially available hardware and software, with some software enhancements to meet the project's goals. It is anticipated that the integrated testbed system will represent a significant advance in the technology for distributed storage systems capable of handling gigabyte class files at gigabit-per-second data rates. The National Storage Laboratory was officially launched on 27 May 1992.

Coyne, Robert A.↗

10 Gigabit Ethernet Performance on SGI Altix and Origin Systems

As the state of high performance computing continues to advance, the size of datasets continue to grow, driving a need for high bandwidth data networks. family of networks. 10 Gigabit Ethernet is the latest step in the popular Ethernet We have evaluated the S2io Xframe 10 Gigabit Ethernet adapter on 512p SGI Altix systems running ProPack 3, and Origin systems running Irix 6.5.24 and 6.5.26 in our production supercomputing environment. We encountered a number of performance and stability issues, which were promptly dealt with by SGI and S2io. Using nttcp we tested TCP performance for single and multiple streams, and we tested file transfer using NFS and bbftp. We will present the results of our testing, including the effects of various tuning options on throughput and CPU utilization, and offer suggestions for configuring and tuning S2io 10 Gigabit Ethernet cards in an Altix/Linux or Origin/Irix environment.

Meyer, Andy↗

Global interconnectivity in the next two decades - A scenario

The present paper provides a description of a part of NASA's current long range plans, taking into account the development of hierarchal space switching centers and laser intersatellite links which can interconnect the globe. It is pointed out that a special objective involves the development of technology and satellite architecture for reducing the cost of an end-to-end voice message per minute from the present average value of around $.40 now realized by terrestrial telephone systems to less than $.10. The next decade of NASA communications activity (1985-1995) is discussed, giving attention to the Advanced Communications Technology Satellite ACTS (July 1984) which will test the technology of space switchboard and signal processing in space. The environment of the decade 1985-1995 is considered along with the roles of communications satellites, the hierarchies of terrestrial public switched networks, cost comparisons of terrestrial and space point-to-point links, and concomitant technology developments related to supercomputers.

Lovell, R.↗

Performance Measurement, Visualization and Modeling of Parallel and Distributed Programs

This paper presents a methodology for debugging the performance of message-passing programs on both tightly coupled and loosely coupled distributed-memory machines. The AIMS (Automated Instrumentation and Monitoring System) toolkit, a suite of software tools for measurement and analysis of performance, is introduced and its application illustrated using several benchmark programs drawn from the field of computational fluid dynamics. AIMS includes (i) Xinstrument, a powerful source-code instrumentor, which supports both Fortran77 and C as well as a number of different message-passing libraries including Intel's NX Thinking Machines' CMMD, and PVM; (ii) Monitor, a library of timestamping and trace -collection routines that run on supercomputers (such as Intel's iPSC/860, Delta, and Paragon and Thinking Machines' CM5) as well as on networks of workstations (including Convex Cluster and SparcStations connected by a LAN); (iii) Visualization Kernel, a trace-animation facility that supports source-code clickback, simultaneous visualization of computation and communication patterns, as well as analysis of data movements; (iv) Statistics Kernel, an advanced profiling facility, that associates a variety of performance data with various syntactic components of a parallel program; (v) Index Kernel, a diagnostic tool that helps pinpoint performance bottlenecks through the use of abstract indices; (vi) Modeling Kernel, a facility for automated modeling of message-passing programs that supports both simulation -based and analytical approaches to performance prediction and scalability analysis; (vii) Intrusion Compensator, a utility for recovering true performance from observed performance by removing the overheads of monitoring and their effects on the communication pattern of the program; and (viii) Compatibility Tools, that convert AIMS-generated traces into formats used by other performance-visualization tools, such as ParaGraph, Pablo, and certain AVS/Explorer modules.

Yan, Jerry C.↗

Finite element methods for high speed flows

An explicit finite element based solution procedure for solving the equations of compressible viscous high speed flow is presented. The method uses domain splitting to advance the solution with different timesteps on different portions of the mesh. For steady inviscid flows, adaptive mesh refinement procedures are successfully employed to enhance the definition of discontinuities. Preliminary ideas on the application of adaptive mesh refinement to the solution of problems involving steady viscous flow are presented. Sample timings are given for the performance of the finite element code on modern supercomputers.

Loehner, R.↗

Alloy Design Workbench-Surface Modeling Package Developed

NASA Glenn Research Center's Computational Materials Group has integrated a graphical user interface with in-house-developed surface modeling capabilities, with the goal of using computationally efficient atomistic simulations to aid the development of advanced aerospace materials, through the modeling of alloy surfaces, surface alloys, and segregation. The software is also ideal for modeling nanomaterials, since surface and interfacial effects can dominate material behavior and properties at this level. Through the combination of an accurate atomistic surface modeling methodology and an efficient computational engine, it is now possible to directly model these types of surface phenomenon and metallic nanostructures without a supercomputer. Fulfilling a High Operating Temperature Propulsion Components (HOTPC) project level-I milestone, a graphical user interface was created for a suite of quantum approximate atomistic materials modeling Fortran programs developed at Glenn. The resulting "Alloy Design Workbench-Surface Modeling Package" (ADW-SMP) is the combination of proven quantum approximate Bozzolo-Ferrante-Smith (BFS) algorithms (refs. 1 and 2) with a productivity-enhancing graphical front end. Written in the portable, platform independent Java programming language, the graphical user interface calls on extensively tested Fortran programs running in the background for the detailed computational tasks. Designed to run on desktop computers, the package has been deployed on PC, Mac, and SGI computer systems. The graphical user interface integrates two modes of computational materials exploration. One mode uses Monte Carlo simulations to determine lowest energy equilibrium configurations. The second approach is an interactive "what if" comparison of atomic configuration energies, designed to provide real-time insight into the underlying drivers of alloying processes.

Abel, Phillip B.↗

Software Engineering Support of the Third Round of Scientific Grand Challenge Investigations: Earth System Modeling Software Framework Survey

One of the most significant challenges in large-scale climate modeling, as well as in high-performance computing in other scientific fields, is that of effectively integrating many software models from multiple contributors. A software framework facilitates the integration task, both in the development and runtime stages of the simulation. Effective software frameworks reduce the programming burden for the investigators, freeing them to focus more on the science and less on the parallel communication implementation. while maintaining high performance across numerous supercomputer and workstation architectures. This document surveys numerous software frameworks for potential use in Earth science modeling. Several frameworks are evaluated in depth, including Parallel Object-Oriented Methods and Applications (POOMA), Cactus (from (he relativistic physics community), Overture, Goddard Earth Modeling System (GEMS), the National Center for Atmospheric Research Flux Coupler, and UCLA/UCB Distributed Data Broker (DDB). Frameworks evaluated in less detail include ROOT, Parallel Application Workspace (PAWS), and Advanced Large-Scale Integrated Computational Environment (ALICE). A host of other frameworks and related tools are referenced in this context. The frameworks are evaluated individually and also compared with each other.

Talbot, Bryan↗

Prediction of contact path and load sharing in spiral bevel gears

A procedure is presented to perform a contact analysis of spiral bevel gears in order to predict the contact path and the load sharing as the gears roll through mesh. The approach utilizes recent advances in automated contact methods for nonlinear finite element analysis. A sector of the pinion and gear is modeled consisting of three pinion teeth and four gear teeth in mesh. Calculation of the contact force and stresses through the gear meshing cycle are demonstrated. Summary of the results are presented using three dimensional plots and tables. Issues relating to solution convergence and requirements for running large finite element analysis on a supercomputer are discussed.

Bibel, George D.↗

Navier-Stokes Solutions of Rotor and Rotor-Body Flows

This paper will review the advances made recently in the Navier-Stokes CFD methods to simulate aerodynamics and aeroacoustics of helicopter rotors and rotor-body flows. Although a complete flowfield simulation of full helicopter is currently not feasible with these methods, impressive gains have been made in analyzing individual components of this complex problem in a very detailed manner. The use of the state-of-the-art numerical algorithms in solution methods, in conjunction with powerful supercomputers, like the Cray-2, have enabled noticeable progress to be made in modeling viscous-inviscid interactions, blade-vortex interactions, tip-vortex: simulation and wake effects, as well as high speed impulsive noise in hover and forward flight for isolated rotor blades. This paper will critically evaluate the presently available Euler and Navier-Stokes methods, both finite-difference and finite volume methods using structured and unstructured grids for helicopter applications for accuracy, suitability, and computational efficiency. The review will also include the recent progress made using overset grids to model rotor-body flows. All the material for this review will be drawn from the published material shown below.

Srinivasan, G. R.↗

Visualizing flow in the Space Shuttle Main Engine

Ongoing work is described aimed at applying advanced post-processing techniques to interpret and understand the complex flow behavior of the Space Shuttle Main Engine. The use of color graphics and powerful new engineering work stations to effectively present massive amounts of numerical data is emphasized. This combination of tools can result in better designs, faster turnaround, and more complete understanding of complex engineering systems like the Shuttle. Furthermore, it allows engineers access to the massive amounts of data generated by supercomputers and provides a more efficient coupling of man and supercomputer.

Belie, R. G.↗

SAVS: A Space Analysis and Visualization System

We propose to develop, test, demonstrate, and deliver to NASA a powerful and versatile data acquisition, manipulation, analysis and visualization system which will enhance scientific capabilities in the display and interpretation of diverse and distributed data within an integrated user-friendly environment. Our approach exploits existing technologies and combines three major elements into an easy-to-use interactive package: (1) innovative visualization software; (2) advanced database techniques; and (3) a rich set of mathematical and image processing tools. Visualization capabilities will include one-, two-, and three-dimensinal displays, along with animation, compression, warping and slicing functions. Analysis tools will include generic mathematical and statistical techniques along with the ability to use large scale models for interactive interpretation of large volume data sets. Our system will be implemented on Sun and EC UNIX workstations and on the Stardent Graphics Supercomputer. Our final deliverable will include complete documentation and a NASA/NSF-CDAW/SUNDIAL campaign demonstration.

Szuszczewicz, Edward P.↗

FFTs in external or hierarchical memory

A description is given of advanced techniques for computing an ordered FFT on a computer with external or hierarchical memory. These algorithms (1) require as few as two passes through the external data set, (2) use strictly unit stride, long vector transfers between main memory and external storage, (3) require only a modest amount of scratch space in main memory, and (4) are well suited for vector and parallel computation. Performance figures are included for implementations of some of these algorithms on Cray supercomputers. Of interest is the fact that a main memory version outperforms the current Cray library FFT routines on the Cray-2, the Cray X-MP, and the Cray Y-MP systems. Using all eight processors on the Cray Y-MP, this main memory routine runs at nearly 2 Gflops.

Bailey, David H.↗

Parallel Methods on Large-Scale Structural Analysis and Physics Applications; Symposium, Hampton, VA, Feb. 5, 6, 1991, Selected Papers

Recent advances in parallel methods and algorithms integrated into large-scale codes are presented. Consideration is given to problem decomposition (substructuring), efficient matrix solution algorithms for shared memory architectures, dynamic and transient analysis algorithms for shared memory architectures, and algorithms for distributed and massively parallel architectures. Particular attention is given to partitioning of unstructured problems for parallel processing, parallel-vector computation for linear-structural analysis and nonlinear unconstraint optimization problems, a parallel-vector equation solver for unsymmetric matrices on supercomputers, parallel nonlinear finite element dynamic response, multigrid algorithms for solving structural mechanics problems on supercomputers, structural analysis on massively parallel computers, explicit finite element methods with contact-impact on SIMD computers, and the impact of mapping and sparsity on parallelized finite element method modules.

Storaasli, Olaf O.↗

Impact of the Columbia Supercomputer on NASA Space and Exploration Mission

NASA's 10,240-processor Columbia supercomputer gained worldwide recognition in 2004 for increasing the space agency's computing capability ten-fold, and enabling U.S. scientists and engineers to perform significant, breakthrough simulations. Columbia has amply demonstrated its capability to accelerate NASA's key missions, including space operations, exploration systems, science, and aeronautics. Columbia is part of an integrated high-end computing (HEC) environment comprised of massive storage and archive systems, high-speed networking, high-fidelity modeling and simulation tools, application performance optimization, and advanced data analysis and visualization. In this paper, we illustrate the impact Columbia is having on NASA's numerous space and exploration applications, such as the development of the Crew Exploration and Launch Vehicles (CEV/CLV), effects of long-duration human presence in space, and damage assessment and repair recommendations for remaining shuttle flights. We conclude by discussing HEC challenges that must be overcome to solve space-related science problems in the future.

Biswas, Rupak↗

Advanced Shipboard Communications Demonstrations with ACTS

For ships at sea. satellites provide the only option for high data rate (HDR), long haul communications. Furthermore the demand for HDR satellite communications (SATCOM) for military and commercial ships. and other offshore platforms is increasing. Presently the bulk of this maritime HDR SATCOM connectivity is provided via C-band and X-band. However, the shipboard antenna sizes required to achieve a data rate of, say T 1 (1.544 Mbps) with present C-/X-band SATCOM systems range from seven to ten feet in diameter. This limits the classes of ships to which HDR services can be provided to those which are large enough to accommodate the massive antennas. With its high powered K/Ka-band spot beams, the National Aeronautics and Space Administration's (NASA) Advanced Communications Technology Satellite (ACTS) was able to provide T I and higher rate services to ships at sea using much smaller shipboard antennas. This paper discusses three shipboard HDR SATCOM demonstrations that were conducted with ACTS between 1996 and 1998. The first demonstration involved a 2 Mbps link provided to the seismic survey ship MN Geco Diamond equipped with a 16-inch wide, 4.5-inch tall, mechanically steered slotted waveguide array antenna developed by the Jet Propulsion Laboratory. In this February 1996 demonstration ACTS allowed supercomputers ashore to process Geco Diamond's voluminous oceanographic seismic data in near real time. This capability allowed the ship to adjust its search parameters on a daily basis based on feedback from the processed data, thereby greatly increasing survey efficiency. The second demonstration was conducted on the US Navy cruiser USS Princeton (CG 59) with the same antenna used on Geco Diamond. Princeton conducted a six-month (January-July 1997) Western Hemisphere solo deployment during which time T1 connectivity via ACTS provided the ship with a range of valuable tools for operational, administrative and quality-of-life tasks. In one instance, video teleconferencing (VTC) via ACTS allowed the ship to provide life-saving emergency medical aid, assisted by specialists ashore. to a fellow mariner - the Master of a Greek cargo ship. The third demonstration set what is believed to be the all-time SATCOM data rate record to a ship at sea, 45 Mbps in October 1998. This Lake Michigan (Chicago area) demonstration employed one of ACTS' fixed beams and involved the smallest of the three vessels, the 45-foot Bayliner M/V Entropy equipped with a modified commercial-off-the-shelf one-meter antenna. A variety of multi-media services were provided to Entropy through a stressing range of sea states. These three demonstrations provided a preview of the capabilities that could be provided to future mariners on a more routine basis when K/Ka-band SATCOM systems are widely deployed.

Axford, Roy A.↗

Progress in Computational Aeroelasticity Using High Fidelity Flow and Structural Equations on Parallel Computers

Aeroelasticity which involves strong coupling of fluids, structures and controls is an important element in designing an aircraft. Computational aeroelasticity using low fidelity methods such as the linear aerodynamic flow equations coupled with the modal structural equations are well advanced. Though these low fidelity approaches are computationally less intensive, they are not adequate for the analysis of modern aircraft such as High Speed Civil Transport (HSCT) and Advanced Subsonic Transport (AST) which can experience complex flow/structure interactions. HSCT can experience vortex induced aeroelastic oscillations whereas AST can experience transonic buffet associated structural oscillations. Both aircraft may experience a dip in the flutter speed at the transonic regime. For accurate aeroelastic computations at these complex fluid/structure interaction situations, high fidelity equations such as the Navier-Stokes for fluids and the finite-elements for structures are needed. Computations using these high fidelity equations require large computational resources both in memory and speed. Current conventional supercomputers have reached their limitations both in memory and speed. As a result, parallel computers have evolved to overcome the limitations of conventional computers. This paper will address the transition that is taking place in computational aeroelasticity from conventional computers to parallel computers. The paper will address special techniques needed to take advantage of the architecture of new parallel computers. Results will be illustrated from computations made on iPSC/860 and IBM SP2 computer by using ENASERO code that directly couples the Euler/Navier-Stokes flow equations with high resolution finite-element structural equations.

Guruswamy, Guru P.↗

A mathematical model for simulating noise suppression of lined ejectors

A mathematical model containing the essential features embodied in the noise suppression of lined ejectors is presented. Although some simplification of the physics is necessary to render the model mathematically tractable, the current model is the most versatile and technologically advanced at the current time. A system of linearized equations and the boundary conditions governing the sound field are derived starting from the equations of fluid dynamics. A nonreflecting boundary condition is developed. In view of the complex nature of the equations, a parametric study requires the use of numerical techniques and modern computers. A finite element algorithm that solves the differential equations coupled with the boundary condition is then introduced. The numerical method results in a matrix equation with several hundred thousand degrees of freedom that is solved efficiently on a supercomputer. The model is validated by comparing results either with exact solutions or with approximate solutions from other works. In each case, excellent correlations are obtained. The usefulness of the model as an optimization tool and the importance of variable impedance liners as a mechanism for achieving broadband suppression within a lined ejector are demonstrated.

Watson, Willie R.↗