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At least 181 records · Page 10

The effects of temperature and NaCl concentration on tetragonal lysozyme face growth rates

Measurements were made of the (110) and (101) face growth rates of the tetragonal form of hen egg white lysozyme at 0.1M sodium acetate buffer, pH 4.0, from 4 to 22 C and with 3.0%, 5.0%, and 7.0% NaCl used as the precipitating salt. The data were collected at supersaturation ratios ranging from approximately 4 to approximately 63. Both decreasing temperature and increasing salt concentrations shifted plots of the growth rate versus C/C(sat) to the right, i.e. higher supersaturations were required for comparable growth rates. The observed trends in the growth data are counter to those expected from the solubility data. If tetragonal lysozyme crystal growth is by addition of ordered aggregates from the solution, then the observed growth data could be explained as a result of the effects of lowered temperature and increased salt concentration on the kinetics and equilibrium processes governing protein-protein interactions in solution. The data indicate that temperature would be a more tractable means of controlling the growth rate for tetragonal lysozyme crystals contrary to the usual practice in, e.g., vapor diffusion protein crystal growth, where both the precipitant and protein concentrations are simultaneously increased. However, the available range for control is dependent upon the protein concentration, with the greatest growth rate control being at the lower concentration.

Forsythe, Elizabeth↗

Packaging and distributing ecological data from multisite studies

Studies of global change and other regional issues depend on ecological data collected at multiple study areas or sites. An information system model is proposed for compiling diverse data from dispersed sources so that the data are consistent, complete, and readily available. The model includes investigators who collect and analyze field measurements, science teams that synthesize data, a project information system that collates data, a data archive center that distributes data to secondary users, and a master data directory that provides broader searching opportunities. Special attention to format consistency is required, such as units of measure, spatial coordinates, dates, and notation for missing values. Often data may need to be enhanced by estimating missing values, aggregating to common temporal units, or adding other related data such as climatic and soils data. Full documentation, an efficient data distribution mechanism, and an equitable way to acknowledge the original source of data are also required.

Information Systems↗

Contribution of National near Real Time MODIS Forest Maximum Percentage NDVI Change Products to the U.S. ForWarn System

This presentation reviews the development, integration, and testing of Near Real Time (NRT) MODIS forest % maximum NDVI change products resident to the USDA Forest Service (USFS) ForWarn System. ForWarn is an Early Warning System (EWS) tool for detection and tracking of regionally evident forest change, which includes the U.S. Forest Change Assessment Viewer (FCAV) (a publically available on-line geospatial data viewer for visualizing and assessing the context of this apparent forest change). NASA Stennis Space Center (SSC) is working collaboratively with the USFS, ORNL, and USGS to contribute MODIS forest change products to ForWarn. These change products compare current NDVI derived from expedited eMODIS data, to historical NDVI products derived from MODIS MOD13 data. A new suite of forest change products are computed every 8 days and posted to the ForWarn system; this includes three different forest change products computed using three different historical baselines: 1) previous year; 2) previous three years; and 3) all previous years in the MODIS record going back to 2000. The change product inputs are maximum value NDVI that are composited across a 24 day interval and refreshed every 8 days so that resulting images for the conterminous U.S. are predominantly cloud-free yet still retain temporally relevant fresh information on changes in forest canopy greenness. These forest change products are computed at the native nominal resolution of the input reflectance bands at 231.66 meters, which equates to approx 5.4 hectares or 13.3 acres per pixel. The Time Series Product Tool, a MATLAB-based software package developed at NASA SSC, is used to temporally process, fuse, reduce noise, interpolate data voids, and re-aggregate the historical NDVI into 24 day composites, and then custom MATLAB scripts are used to temporally process the eMODIS NDVIs so that they are in synch with the historical NDVI products. Prior to posting, an in-house snow mask classification product is computed for the current compositing period and integrated into the change images to account for snow related NDVI drops. The supplemental snow classification product was needed because other available QA cloud/snow mask typically underestimates snow cover. MODIS true and false color composites were also computed from eMODIS reflectance data and the true color RGBs are also posted on ForWarn?s FCAV; this data is used for assessing apparent occasional quality issues on the change products due to residual unmasked cloud cover. New forest change products are posted with typical latencies of 1-2 days after the last input eMODIS data collection date for a given 24 day compositing period.

Spruce, Joseph P.↗

A Conceptual Approach to Assimilating Remote Sensing Data to Improve Soil Moisture Profile Estimates in a Surface Flux/Hydrology Model: Aggregation - 2

This is a follow up on the preceding presentation by Crosson. The grid size for remote microwave measurements is much coarser than the hydrological model computational grids. To validate the hydrological models with measurements we propose mechanisms to aggregate the hydrological model outputs for soil moisture to allow comparison with measurements. Weighted neighborhood averaging methods are proposed to facilitate the comparison. We will also discuss such complications as misalignment, rotation and other distortions introduced by a generalized sensor image.

Schamschula, Marius↗

Perceive: Proactive Exploration of Risky Concept Emergence for Identifying Vulnerabilities & Exposures

National databases that collect various kinds of textual threat reports such as ASRS, CERT, and NVD manually process their reports individually. They then offer data products to disseminate the aggregate information, like newsletters, alerts or individual report searching. The goal of this research is to connect these individual reports thematically and temporally to identify emerging or recurring threats, by analyzing large collections of text, source code, collaboration and communication patterns. This capability, I argue, enables us to identify the emergence and recurrence of such themes, and the contexts in which they re-occur, facilitating faster and more capable mitigation. I propose two models to shed light on this goal: An empirical model of vulnerabilities as bugs, the commit flow model, and one of the vulnerabilities and aviation safety threats as topics, the topic flow model. I use as gold standard existing manual workflows in both domains, reflected in the existing data products by these organizations, and empirically evaluate if the automated model scan match or outperform existing manual practices.

ASRS↗

Watching Without Seeing a Tool to Surveil Astronaut Health Outcomes While Maintaining Astronaut Medical Privacy

BACKGROUND The Privacy Act of 1974 regulates the use a nd disclosure of personally identifiable information by US Federal agencies. The Act applies to biographical, financial, a nd other identity-linked information, a s well a s personal health information (PHI). As such, the use of astronaut PHI is limited to authorized personnel for preapproved uses, with data reporting often limited to aggregated information about groups. These limitations on the use a nd reporting of astronaut PHI complicates surveillance efforts, wherein epidemiologists a t the National Aeronautics and Space Administration (NASA)monitor the incidence of targeted health conditions in the astronaut population, or to discover emerging trends of aging and disease. Stratification on one or more covariates –particularly time-period, sex, a nd mission participation –can lead to extremely small datasets such that the reporting of results is potentially attributable to individuals. An additional challenge is the small size of the astronaut population, both in terms of numbers of individuals a s well a s in terms of density of exposure time. Such small datasets yield volatile rate estimates that are difficult to interpret. To a id the epidemiological surveillance efforts, a surveillance tool is required that can (a) satisfy the need for rapid computation of condition-specific incidence and mortality rates; (b) improve the statistical estimates of these estimated rates; and (c) maintain astronaut privacy. Here we describe a nd demonstrate such a tool. METHODS We devised a system that models incidence a nd mortality rates rather than calculating them directly. This ha s the advantage of using all the available data to derive the estimates, lea ding to rates that a re not attributable to any one individual, a nd a re a s numerically stable a s they can be given the extremely limited data. The system models disease endpoints using a Poisson regression model with exposure density (measured in person-years) a s a n offset term. By doing so the model is estimating event counts per person-year, equivalent to modeling the rates directly. It uses a standard (pre-specified)set of covariates; the system does not engage in “model-building” as model parsimony is not the goa l. Instead, it is explicitly recognized that if a covariate is not statistically significant a nd not a confounder then it will likely have very little effect on the estimate of the incidence a nd mortality rates. Users are able to specify the disease endpoint of interest and the covariates over which they would like to stratify. The system then uses the resulting model to compute the estimated rates for the user-chosen configuration of variables as visualizes those either over an age range within a specified time-period, or over time for astronauts with a specified age range. RESULTS The first iteration of the tool computes incidence a nd mortality rates for cardiovascular conditions and cancers. Code ha s been developed to retrieve the appropriate data from the IMPALA analysis platform, compute the models for incidence a nd mortality, a nd then use those models to generate the corresponding rate curves. A companion graphical user interface allows the user to specify the curves and visualize the results. CONCLUSIONS It is important to note that the rapid surveillance tool described here is neither meant to be a definitive assessment of the incidence or mortality of any particular disease or condition in the astronaut population, nor is it meant to be used for research purposes. Rather, it is meant as an early indicator that in-depth investigation may be warranted. By automating a repetitive process and leveraging carefully curated astronaut health outcomes, the tool makes possible a rapid “first look” into known areas of concern, and, if used judiciously, may surface new areas of concern for long-term astronaut health. This work is supported in part by the Translational Research Institute for Space Health (TRISH) through NASA Cooperative Agreement NNX16AO69A.

R J Reynolds↗

Generating Ground Reference Data for a Global Impervious Surface Survey

We are engaged in a project to produce a 30m impervious cover data set of the entire Earth for the years 2000 and 2010 based on the Landsat Global Land Survey (GLS) data set. The GLS data from Landsat provide an unprecedented opportunity to map global urbanization at this resolution for the first time, with unprecedented detail and accuracy. Moreover, the spatial resolution of Landsat is absolutely essential to accurately resolve urban targets such as buildings, roads and parking lots. Finally, with GLS data available for the 1975, 1990, 2000, and 2005 time periods, and soon for the 2010 period, the land cover/use changes due to urbanization can now be quantified at this spatial scale as well. Our approach works across spatial scales using very high spatial resolution commercial satellite data to both produce and evaluate continental scale products at the 30m spatial resolution of Landsat data. We are developing continental scale training data at 1m or so resolution and aggregating these to 30m for training a regression tree algorithm. Because the quality of the input training data are critical, we have developed an interactive software tool, called HSegLearn, to facilitate the photo-interpretation of high resolution imagery data, such as Quickbird or Ikonos data, into an impervious versus non-impervious map. Previous work has shown that photo-interpretation of high resolution data at 1 meter resolution will generate an accurate 30m resolution ground reference when coarsened to that resolution. Since this process can be very time consuming when using standard clustering classification algorithms, we are looking at image segmentation as a potential avenue to not only improve the training process but also provide a semi-automated approach for generating the ground reference data. HSegLearn takes as its input a hierarchical set of image segmentations produced by the HSeg image segmentation program [1, 2]. HSegLearn lets an analyst specify pixel locations as being either positive or negative examples, and displays a classification of the study area based on these examples. For our study, the positive examples are examples of impervious surfaces and negative examples are examples of non-impervious surfaces. HSegLearn searches the hierarchical segmentation from HSeg for the coarsest level of segmentation at which selected positive example locations do not conflict with negative example locations and labels the image accordingly. The negative example regions are always defined at the finest level of segmentation detail. The resulting classification map can be then further edited at a region object level using the previously developed HSegViewer tool [3]. After providing an overview of the HSeg image segmentation program, we provide a detailed description of the HSegLearn software tool. We then give examples of using HSegLearn to generate ground reference data and conclude with comments on the effectiveness of the HSegLearn tool.

Tilton, James C.↗

Share Data with OPeNDAP Hyrax: New Features and Improvements

During the upcoming Summer 2016 meeting of the ESIP Federation (July 19-22), OpenDAP will hold a Developers and Users Workshop. While a broad set of topics will be covered, a key focus is capitalizing on recent EOSDIS-sponsored advances in Hyrax, OPeNDAPs own software for server-side realization of the DAP2 and DAP4 protocols. These Hyrax advances are as important to data users as to data providers, and the workshop will include hands-on experiences of value to both. Specifically, a balanced set of presentations and hands-on tutorials will address advances in 1. server installation, 2. server configuration, 3. Hyrax aggregation capabilities, 4. support for data-access from clients that are HTTP-based, JSON-based or OGC-compliant (especially WCS and WMS), 5. support for DAP4,6.use and extension of server-side computational capabilities, and7.several performance-affecting matters. Topics 2 through 7 will be relevant to data consumers, data providers and notably, due to the open-source nature of all OPeNDAP software to developers wishing to extend Hyrax, to build compatible clients and servers, and/or to employ Hyrax as middleware that enables interoperability across a variety of end-user and source-data contexts. A session for contributed talks will elaborate the topics listed above and embrace additional ones.

OPeNDAP↗

LACIE large area acreage estimation

A sample wheat acreage for a large area is obtained by multiplying its small grains acreage estimate as computed by the classification and mensuration subsystem by the best available ratio of wheat to small grains acreages obtained from historical data. In the United States, as in other countries with detailed historical data, an additional level of aggregation was required because sample allocation was made at the substratum level. The essential features of the estimation procedure for LACIE countries are included along with procedures for estimating wheat acreage in the United States.

Chhikara, R. S.↗

Manganese oxidation in pH and O2 microenvironments produced by phytoplankton

This paper reports on the oxidation of Mn(II) by pure cultures of Chlorella. It is shown that these cultures establish strong microgradients of pH and O2 concentration due to their photosynthetic activity, and it is demonstrated that Mn oxidation in the pelagic zone of Oneida Lake, New York, is limited to a microzone of high pH and O2 associated with the near-surface aggregates of phytoplankton cells. The data suggest that visible light is important in catalyzing Mn oxidation by driving the photosynthetic removal of CO2 with concomitant increases in pH.

Richardson, Laurie L.↗

Assessing the Impacts of Two Averaging Methods on AIRS Level 3 Monthly Products and Multi-Year Monthly Means

The Atmospheric Infrared Sounder (AIRS) onboard NASA’s Aqua satellite provides more than 16 years of data. Its monthly gridded (Level 3) product has been widely used for climate research and applications. Since counts of successful soundings in a grid cell are used to derive monthly averages, this “Averaged By Observations (ABO)” approach effectively gives equal importance to all participating soundings within a month. It is conceivable, then, that days with more observations due to day-to-day orbit shift and regimes with better retrieval skills, will contribute disproportionately to the monthly average within a cell. Alternatively, the AIRS Level 3 monthly product can be produced through an "Averaged By Days (ABD)” approach, where the monthly mean in a grid cell is a simple average of the daily means. The effects of these averaging methods on the AIRS version 6 monthly product are assessed quantitatively using temperature and water vapor at surface and 500hPa. The ABO method results in a warmer (slightly colder) global mean temperature at surface (500hPa) and a drier global mean water vapor than ABD method. The AIRS multi-year monthly mean temperature and water vapor from both methods are also compared with the Modern-Era Retrospective analysis for Research and Applications – 2 (MERRA-2) product and evaluated with a simulation experiment, indicating the ABD method has less error and is more closely correlated with MERRA-2. In summary, the ABD method is recommended for future versions of the AIRS Level 3 monthly product and more data services supporting Level 3 aggregation are needed.

AIRS↗

FLUXNET-CH4: a global, multi-ecosystem dataset and analysis of methane seasonality from freshwater wetlands

Methane (CH4) emissions from natural landscapes constitute roughly half of global CH4 contributions to the atmosphere, yet large uncertainties remain in the absolute magnitude and the seasonality of emission quantities and drivers. Eddy covariance (EC) measurements of CH4 flux are ideal for constraining ecosystem-scale CH4 emissions due to quasi-continuous and high-temporal-resolution CH4 flux measurements, coincident carbon dioxide, water, and energy flux measurements, lack of ecosystem disturbance, and increased availability of datasets over the last decade. Here, we (1) describe the newly published dataset, FLUXNET-CH4 Version 1.0, the first open-source global dataset of CH4 EC measurements (available at https://fluxnet.org/data/fluxnet-ch4-community-product/, last access: 7 April 2021). FLUXNET-CH4 includes half-hourly and daily gap-filled and non-gap-filled aggregated CH4 fluxes and meteorological data from 79 sites globally: 42 freshwater wetlands, 6 brackish and saline wetlands, 7 formerly drained ecosystems, 7 rice paddy sites, 2 lakes, and 15 uplands. Then, we (2) evaluate FLUXNET-CH4 representativeness for freshwater wetland coverage globally because the majority of sites in FLUXNET-CH4 Version 1.0 are freshwater wetlands which are a substantial source of total atmospheric CH4 emissions; and (3) we provide the first global estimates of the seasonal variability and seasonality predictors of freshwater wetland CH4 fluxes. Our representativeness analysis suggests that the freshwater wetland sites in the dataset cover global wetland bioclimatic attributes (encompassing energy, moisture, and vegetation-related parameters) in arctic, boreal, and temperate regions but only sparsely cover humid tropical regions. Seasonality metrics of wetland CH4 emissions vary considerably across latitudinal bands. In freshwater wetlands (except those between 20°S to 20°N) the spring onset of elevated CH4 emissions starts 3 d earlier, and the CH4 emission season lasts 4 d longer, for each degree Celsius increase in mean annual air temperature. On average, the spring onset of increasing CH4 emissions lags behind soil warming by 1 month, with very few sites experiencing increased CH4 emissions prior to the onset of soil warming. In contrast, roughly half of these sites experience the spring onset of rising CH4 emissions prior to the spring increase in gross primary productivity (GPP). The timing of peak summer CH4 emissions does not correlate with the timing for either peak summer temperature or peak GPP. Our results provide seasonality parameters for CH4 modeling and highlight seasonality metrics that cannot be predicted by temperature or GPP (i.e., seasonality of CH4 peak). FLUXNET-CH4 is a powerful new resource for diagnosing and understanding the role of terrestrial ecosystems and climate drivers in the global CH4 cycle, and future additions of sites in tropical ecosystems and site years of data collection will provide added value to this database. All seasonality parameters are available at https://doi.org/10.5281/zenodo.4672601 (Delwiche et al., 2021). Additionally, raw FLUXNET-CH4 data used to extract seasonality parameters can be downloaded from https://fluxnet.org/data/fluxnet-ch4-community-product/ (last access: 7 April 2021), and a complete list of the 79 individual site data DOIs is provided in Table 2 of this paper.

FLUXNET-CH4↗

Sampling Biases of Space-Based Observations of XCO 2 Associated With South American Biomass Burning Events

We examine time series of OCO-2 xCO2 observations from 2017-2020 coincident with other remotely sensed and in-situ observations to better understand external sampling effects associated with biomass burning events. The GES DISC will publish How-To documents as Jupyter Notebooks to describe how to aggregate OCO-2 Level 2 data and create similar time series.

Kristan Morgan↗

The Data Acquisition and Controls Systems (DACS) of the E-Complex at the John C. Stennis Space Center, MS: A General Overview

The John C. Stennis Space Center (SSC) provides test operations services to a variety of customers including NASA, DoD, commercial enterprises, and others for the development of current next-generation rocket propulsion systems. Many of these test operations services are provided in the E-Complex series of test facilities. The E-Complex is composed of three active test stands (E1, E2, & E3), each with two or more test positions. Each test position is comprised of unique sets of data acquisition and controls hardware and software that record both facility and test article data and safely operate the test facility. The E-Complex data acquisition system (DAS) is actually composed of two separate systems, one for static data and the other for dynamic. The static DAS, otherwise known as the Low-Speed DAS (LSDAS), samples 16 bit data at 250 samples-per-second (SPS), although an aggregate sample rate of 200,000 SPS is possible. The dynamic data acquisition system, otherwise known as the high-speed DAS (HSDAS), samples 16 bit data at 100K SPS with a 45 KHz bandwidth.

Hughes, Mark S.↗

Transcriptomics-based Machine Learning (ML) Analysis Predicts Space-Exposed Murine Livers

NASA has employed high-throughput molecular assays to identify sub-cellular changes impacting human physiology during spaceflight. Machine learning (ML) methods hold the promise to improve our ability to identify important signals within highly dimensional molecular data. However, the inherent limitation of study subject numbers within a spaceflight mission minimizes the utility of ML approaches. To overcome the sample power limitations, data from multiple spaceflight missions must be aggregated while appropriately addressing intra- and inter-study variabilities. Here we describe an approach to log transform, scale and normalize data from six heterogeneous, mouse liver derived transcriptomics datasets (ntotal=137) which enabled ML-methods to perform well (AUC ≥ 0.87) in classifying spaceflown vs ground control animals rather than mission-of-origin. Concordance was found between liver-specific biological processes identified from harmonized ML-based analysis and study-by-study classical omics analysis. This work demonstrates the feasibility of applying ML methods on integrated, heterogeneous datasets of small sample size.

Machine Learning↗

Historical Domestic Flights from 2016-2020 with Estimations of Greenhouse Gas Emissions by Aircraft Type

Data and analyses are presented on the utilization of aircraft fuel in the U.S. and the greenhouse gas emissions that they create. Aggregated commercial passenger and freight aviation flight data from 2016-2020 is captured from the Bureau of Transportation Statistics website is used to augment flight data from the Sherlock data warehouse at NASA Ames is used to determine the miles flown by major aircraft models. The corresponding fuel burn is estimated using the International Civilian Aviation Organization fuel burn tables and carbon dioxide emissions are calculated using a fuel-burn multiplicative factor. One key conclusion of this analysis is that long haul flights (i.e. >2485 statute miles) create a disproportionately large amount of carbon dioxide emissions in the U.S while short flights (i.e. < 311 statute miles) contribute less than five percent of the U.S. aviation-related carbon dioxide emission. Although these short-haul flights may not have a large impact on overall carbon dioxide emissions, they will be a critical entry point for the adoption of future, larger fuel-efficient novel vehicles and the impact to future airport and infrastructure requirements. The final paper will present some estimates of the impact of advanced technologies on fuel burn and CO₂ emissions in various scenarios.

Susie Go↗

Using NASA Environmental Data to Enhance Public Health Decision Making

The Universities Space Research Association at the NASA Marshall Space Flight Center is collaborating with the University of Alabama at Birmingham (UAB) School of Public Health and the Centers for Disease Control and Prevention (CDC) to address issues of environmental health and enhance public health decision making by utilizing NASA remotely sensed data and products. The objectives of this collaboration are to develop high-quality spatial data sets of environmental variables, and deliver the data sets and associated analyses to local, state and federal end-user groups. These data can be linked spatially and temporally to public health data, such as mortality and disease morbidity, for further analysis and decision making. Three daily environmental data sets have been developed for the conterminous U.S. on different spatial resolutions for the time period 2003-2008: (1) spatial surfaces of estimated fine particulate matter (PM2.5) exposures on a 10-km grid utilizing the US Environmental Protection Agency (EPA) ground observations and NASA s MODerate-resolution Imaging Spectroradiometer (MODIS) data; (2) a 1-km grid of Land Surface Temperature (LST) using MODIS data; and (3) a 12-km grid of daily Solar Insolation (SI) and maximum and minimum air temperature using the North American Land Data Assimilation System (NLDAS) forcing data. These environmental data sets will be linked with public health data from the UAB REasons for Geographic And Racial Differences in Stroke (REGARDS) national cohort study to determine whether exposures to these environmental risk factors are related to cognitive decline and other health outcomes. These environmental datasets and public health linkage analyses will be made available to public health professionals, researchers and the general public through the CDC Wide-ranging Online Data for Epidemiologic Research (WONDER) system and through peer reviewed publications. To date, two of the data sets have been released to the public in CDC WONDER, Daily Air Temperature and Heat Index for years 1979-2010, and Daily Fine Particulate Matter (PM2.5) air quality measures for years 2003-2008. These data in CDC WONDER can be aggregated to the county-level, state-level, or regional-level as per users need and downloaded in tabular, graphical, and map formats. The summary statistical output are available to web and app developers via the WONDER Application Programming Interface (API). The linkage of these data with the CDC WONDER system provides a significant addition to CDC WONDER, allowing public health researchers and policy makers to better include environmental exposure data in the context of other health data available in CDC WONDER online system. It also substantially expands public access to NASA environmental data, making their use by a wide range of decision makers feasible.

Al-Hamdan, Mohammad↗

A Cost and Performance System (CAPS) in a Federal agency

Cost and Performance System (CAPS) is an automated system used from the planning phase through implementation to analysis and documentation. Data is retrievable or available for analysis of cost versus performance anomalies. CAPS provides a uniform system across intra- and international elements. A common system is recommended throughout an entire cost or profit center. Data can be easily accumulated and aggregated into higher levels of tracking and reporting of cost and performance.The level and quality of performance or productivity is indicated in the CAPS model and its process. The CAPS model provides the necessary decision information and insight to the principal investigator/project engineer for a successful project management experience. CAPS provides all levels of management with the appropriate detailed level of data.

Huseonia, W. F.↗