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177 records · Page 10

Estimation of Fire Emissions from Satellite-Based Measurements

Biomass burning is a worldwide phenomenon affecting many vegetated parts of the globe regularly. Fires emit large quantities of aerosol and trace gases into the atmosphere, thus influencing the atmospheric chemistry and climate. Traditional methods of fire emissions estimation achieved only limited success, because they were based on peripheral information such as rainfall patterns, vegetation types and changes, agricultural practices, and surface ozone concentrations. During the last several years, rapid developments in satellite remote sensing has allowed more direct estimation of smoke emissions using remotely-sensed fire data. However, current methods use fire pixel counts or burned areas, thereby depending on the accuracy of independent estimations of the biomass fuel loadings, combustion efficiency, and emission factors. With the enhanced radiometric range of its 4-micron fire channel, the Moderate Resolution Imaging Spectroradiometer (MODIS) sensor, which flies aboard both of the Earth Observing System EOS) Terra and Aqua Satellites, is able to measure the rate of release of fire radiative energy (FRE) in MJ/s (something that older sensors could not do). MODIS also measures aerosol distribution. Taking advantage of these new resources, we have developed a procedure combining MODIS fire and aerosol products to derive FRE-based smoke emission coefficients (C(e), in kg/MJ) for different regions of the globe. These coefficients are simply used to multiply FRE from MODIS to derive the emitted smoke aerosol mass. Results from this novel methodology are very encouraging. For instance, it was found that the smoke total particulate mass emission coefficient for the Brazilian Cerrado ecosystem (approximately 0.022 kg/MJ) is about twice the value for North America, Western Europe, or Australia, but about 50% lower than the value for southern Africa.

Ichoku, Charles↗

Mapping invasive alien species in grassland ecosystems using airborne imaging spectroscopy and remotely observable vegetation functional traits

Lespedeza cuneata (sericea lespedeza; hereafter “sericea”) is an invasive species brought to the U.S. from East Asia in the 1890s to be used as forage. However, it has now become a growing ecological and economic threat in grasslands of several states in the U.S. southern Great Plains including Oklahoma, Kansas, Missouri, and Nebraska. Here, we demonstrate the capability of airborne imaging spectroscopy to map sericea in a large natural grassland within the Tallgrass Prairie Preserve, the largest protected tallgrass prairie in the world, located in northeastern Oklahoma. Through this research, we investigated which remotely observable vegetation functional traits (referring to biochemical, physiological, and structural traits) contribute to distinguishing sericea from cooccurring native species and whether we can detect sericea remotely through quantifying these functional traits using imaging spectroscopic data (also known as hyperspectral data). To achieve these objectives, full-range airborne hyperspectral data with spatial resolution of 1 m were collected from the study area in August 2020. In addition, a total of 12 vegetation functional traits were measured through field sampling for model development. We first identified functional traits that contributed to separating sericea from other species, and then used them in a classification model to detect sericea in our study site. We found total carotenoids (sum of neoxanthin, violaxanthin, antheraxanthin, zeaxanthin, and lutein), chlorophyll a + b (sum of chlorophyll a and chlorophyll b), total nitrogen, canopy height, potassium, and magnesium as the main functional traits contributing to the detection of sericea; an overall classification accuracy of approximately 94% was reported. However, the proposed approach overestimated sericea cover in species-rich plant communities. Overall, our findings demonstrated an essential role for airborne remote sensing in 1) direct mapping of invasive plants and 2) quantifying functional traits associated with success strategies of invasive species. Eventually, experiments like ours can aid in developing large-scale and science-driven management practices to both identify the current extent, and to control the spread of invasive species in grasslands and similar short-stature environments. This will not only improve management practices but will have major societal and economic benefits.

Hamed Gholizadeh↗

The limits of palaeontological knowledge: finding the gold among the dross

Palaeontological interpretation rests on two interwoven sets of comparisons with the modern world. Palaeobiological interpretation relies on the placement of fossils within a phylogenetic and functional framework based primarily on the comparative biology of living organisms. Analogy to currently observable chemical, physical and taphonomic processes enables palaeoenvironmental inferences to be drawn from geological data. In older rocks, comparisons with the modern Earth can become tenuous, limiting palaeontological interpretation. The problem reaches its apogee in Archaean successions, yet pursuit of multiple lines of evidence establishes that complex microbial communities, fuelled by autotrophy and, likely, photoautotrophy, existed 3500 million years ago. Although Archaean palaeontology has to date focused on silicified coastal sediments, improved understanding of Earth's earliest biosphere may depend on the development of alternative environmental and taphonomic analogies. Spring precipitates and hydrothermal metal deposits are promising candidates. Terrestrial organisms may be of limited value in interpreting such fossils as may be found on Mars, although some points of comparison could prove general. Given limited opportunities for exploration, proper choice of environmental analogy is critical. Spring precipitates constitute excellent deposits for addressing questions of biology on another planet.

NASA Discipline Exobiology↗

Quantifying Changes in Urban Albedo with NASA Earth Observations to Reduce the Urban Heat Island Effect in Cambridge, Massachusetts

Elevated temperatures resulting from the urban heat island (UHI) effect can have widespread impacts on human health, infrastructure, and ecosystems. These impacts can be exacerbated by changes in climate and extreme variation in regional temperature. By 2030, experts expect Cambridge, Massachusetts will experience warmer than average temperatures, more heat waves, and triple the number of abnormally warm days above 90°F per year. The NASA DEVELOP Program partnered with the City of Cambridge’s Community Development Department and the American Geophysical Union’s Thriving Earth Exchange to inform ongoing efforts aimed at reducing the impacts of urban heat in the city of Cambridge. The team used scenes obtained from High Resolution Orthoimagery and the National Agriculture Imagery Program in conjunction with building footprint data, to calculate rooftop albedo between 2008 and 2018. Using these results, maps displaying building-specific variation in albedo across Cambridge were created. A nighttime land surface temperature (LST) record for June, July, and August between 2003 and 2019 was constructed using the Aqua Moderate Resolution Imaging Spectroradiometer (MODIS) nighttime LST product. Lastly, temperature anomalies were calculated for Cambridge using seasonally averaged nighttime LST values obtained from Aqua MODIS to display ‘hot spots’ for summers between 2004 and 2019. The results of this project were then incorporated into an interactive ArcGIS Dashboard. This work will allow end users to explore spatial and temporal trends in albedo, nighttime LST, and temperature anomalies to assess whether the City of Cambridge is successfully reducing the effects of UHIs.

NASA DEVELOP↗

Using Landsat 8 Satellite Imagery to Analyze Biogeochemical Constituents in the Waters of the San Francisco Bay Area and Beyond

The ocean's coastal zones play a key role in our planet's health and mitigate the adverse effects of climate change. Building on the success of NASA satellite imagery in mapping land cover changes around the globe in response to climate change, deforestation, and natural disasters, I have worked to determine how aquatic reflectance images from the Landsat 8 sensor could be correlated with biogeochemical constituents within the waters of the San Francisco Bay Area and California coastline. By analyzing Landsat 8 satellite imagery from the years 2013-2020 in collaboration with data from the United States Geological Survey (USGS), San Francisco Estuary Institute (SFEI), and universities involved with the Harmful Algal Bloom Monitoring and Alert Program (HABMAP), I investigated which areas of the San Francisco Bay and California coastline demonstrated significant correlations with values extracted from the satellite imagery. Using a Chlorophyll Index (CI) ratio calculated from two Landsat 8 satellite reflectance bands, it was found that there is a positive correlation between the CI and calculated oxygen, suspended particulate matter, and silicate from several USGS sampling points. In contrast, there is a significant negative correlation between the CI and salinity, nitrite, and phosphate at those same locations. Moreover, large suspected harmful algal blooms (HABs) along the California coastline seen in the Landsat 8 imagery were corroborated with HAB data from various institutions. Understanding the effectiveness of Landsat 8 aquatic reflectance images will allow scientists to predict HABs and other nutrient cycling that may be harmful to aquatic ecosystems around the world.

Landsat↗

Microbial structural diversity estimated by dilution-extinction of phenotypic traits and T-RFLP analysis along a land-use intensification gradient

The present work tested whether the relationship between functional traits and inoculum density reflected structural diversity in bacterial communities from a land-use intensification gradient applying a mathematical model. Terminal restriction fragment length polymorphism (T-RFLP) analysis was also performed to provide an independent assessment of species richness. Successive 10-fold dilutions of a soil suspension were inoculated onto Biolog GN(R) microplates. Soil bacterial density was determined by total cell and plate counts. The relationship between phenotypic traits and inoculum density fit the model, allowing the estimation of maximal phenotypic potential (Rmax) and inoculum density (KI) at which Rmax will be half-reduced. Though Rmax decreased with time elapsed since clearing of native vegetation, KI remained high in two of the disturbed sites. The genetic pool of bacterial community did not experience a significant reduction, but the active fraction responding in the Biolog assay was adversely affected, suggesting a reduction in the functional potential. c2004 Federation of European Microbiological Societies. Published by Elsevier B.V. All rights reserved.

NASA Center KSC↗

Amazon Rain Forest Classification Using J-ERS-1 SAR Data

The Amazon rain forest is a region of the earth that is undergoing rapid change. Man-made disturbance, such as clear cutting for agriculture or mining, is altering the rain forest ecosystem. For many parts of the rain forest, seasonal changes from the wet to the dry season are also significant. Changes in the seasonal cycle of flooding and draining can cause significant alterations in the forest ecosystem.Because much of the Amazon basin is regularly covered by thick clouds, optical and infrared coverage from the LANDSAT and SPOT satellites is sporadic. Imaging radar offers a much better potential for regular monitoring of changes in this region. In particular, the J-ERS-1 satellite carries an L-band HH SAR system, which via an on-board tape recorder, can collect data from almost anywhere on the globe at any time of year.In this paper, we show how J-ERS-1 radar images can be used to accurately classify different forest types (i.e., forest, hill forest, flooded forest), disturbed areas such as clear cuts and urban areas, and river courses in the Amazon basin. J-ERS-1 data has also shown significant differences between the dry and wet season, indicating a strong potential for monitoring seasonal change. The algorithm used to classify J-ERS-1 data is a standard maximum-likelihood classifier, using the radar image local mean and standard deviation of texture as input. Rivers and clear cuts are detected using edge detection and region-growing algorithms. Since this classifier is intended to operate successfully on data taken over the entire Amazon, several options are available to enable the user to modify the algorithm to suit a particular image.

J-ERS-1↗

Diagnosing Seasonal to Multi-decadal Phytoplankton Group Dynamics in a Highly Productive Coastal Ecosystem

The Santa Barbara Channel, CA (SBC) is a biodiverse marine ecosystem fueled largely by phytoplankton productivity, and the composition of the phytoplankton community influences the magnitude and fates of this productivity. Here, we create a 22-year monthly time series of phytoplankton biomarker pigment concentrations in the SBC by combining 12 years of high performance liquid chromatography phytoplankton pigment concentrations with bio-optical models and 10 additional years of bio-optical observations. The bio-optical models skillfully predict biomarker pigment concentrations representative of five distinct phytoplankton groups (PGs; diatoms, dinoflagellates, chlorophytes, prymnesiophytes, and picophytoplankton) and resolve seasonal responses to the annual upwelling-relaxation cycle for all PGs except the dinoflagellates. Our observations indicate that nanophytoplankton groups respond most rapidly to seasonal upwelling, followed by diatoms, and then by picophytoplankton as the water column stratifies in the summer. A Regional Ocean Modeling System (ROMS) solution is used to relate advection of different source waters to the observed PG dynamics. The ROMS simulation results suggest that, on seasonal time scales, pronounced cross-SBC differences in PG seasonality are related to cross-SBC differences in source waters. El Niño Southern Oscillation events drive interannual variability in the upwelling response of most PGs. On decadal time scales, dinoflagellate blooms are associated with the warm phase of the North Pacific Gyre Oscillation and anomalous advection of Southern California Bight source waters into the SBC. Taken together, our results provide a novel view of phytoplankton community succession in response to seasonal upwelling by considering the dynamics of pico- and nano-phytoplankton and suggest that regional surface ocean advection plays a substantial role in driving phytoplankton composition in the SBC.

Phytoplankton↗

PACE OCI Short-Wave Infrared Detection Assembly frequency-dependent linearity characterization and uncertainty analysis

The Ocean Color Instrument (OCI), the primary payload of the Plankton, Aerosol, Cloud, ocean Ecosystem (PACE)observatory, will collect data to monitor the health of Earth’s oceans and atmosphere. The Short-Wave Infrared(SWIR) Detection Assembly (SDA) was built and characterized by the Utah State University Space DynamicsLaboratory (SDL) and is a subsystem of OCI. The SDA measures seven bands centered at 940, 1038, 1250, 1378,1615, 2130, and 2260 nm, with standard- and high-gain varieties for the 1250 and 1615 nm bands, resulting in nine total detection configurations in the SWIR. The delivery of high-quality science data is critically dependent upon accurately characterizing the linearity of the SDA. Two metrology techniques were employed to measure the linearity and characterize the frequency-dependent linearity uncertainty of the system. The first technique used superposition linearity measurements to determine the DC linearity, and the second technique involved an oscillating small-signal response at seven frequencies to determine the frequency-dependent linearity. Discrepancies between the DC and frequency-dependent linearities constrain the uncertainty between the two. Examining the difference between these two methods for all SDA channels, we find most channels experience an uncertainty below0.2% with a worst-case measurement uncertainty of 0.31%. Averaging SDA channels with similar detectors, optical filters, and electronics to simulate the flight-like data products yields a worst-case frequency-dependence linearity uncertainty of 0.12%, demonstrating minimal frequency dependence, implying an excellent linearity knowledge.Detailed performance knowledge, including linearity performance, verifies data quality and builds confidence in the success of the PACE mission.

PACE↗

Models for Facilitating Government-Funded Activities in the Post-ISS LEO Ecosystem

This study helps elucidate NASA’s future options for facilitating government-funded activities in the post-International Space Station (ISS) low-Earth orbit (LEO) ecosystem. NASA is preparing for the retirement of the ISS and transition of LEO activities to one or more Commercial LEO Destinations (CLDs) by 2030. This transition necessitates new models for connecting NASA and other users of the LEO environment to platforms and opportunities. In light of this transition, NASA senior leadership tasked the Office of Technology, Policy, and Strategy (OTPS) with answering two questions: 1) what are potential models for an ISS National Lab facilitating government-funded or subsidized activities on a commercial LEO platform after the transition of the ISS to one or more private platforms, and 2) in light of these options, what modifications would be helpful to make in the current ISSNL-CASIS partnership and the NASA management processes as NASA plans for the transition of the ISS by 2030? To answer the first question, we conducted a stakeholder-driven analysis to identify a trade space of six differentiated model options. We then evaluated their performance in three potential future scenarios, according to evaluation criteria deemed important to stakeholders. The six models are illustrative and representational of a potential trade space. Additionally, each model requires change to current legislation. To further aid in leadership decision-making, we provided considerations for how to strengthen each model by mixing and matching different model aspects. To answer the second question, we looked to strengths of the top-performing models to evolve the current ISSNL-CASIS relationship and improve NASA’s posture for success post-ISS. We identified four possible modifications to the ISSNL-CASIS partnership and NASA’s management of these activities. By implementing these modifications early, NASA can increase the return from ISSNL-CASIS and help prepare for future models as one or more CLD replaces the ISS by 2030.

ISS↗

A Quantum Annealing Computer Team Addresses Climate Change Predictability

The near confluence of the successful launch of the Orbiting Carbon Observatory2 on July 2, 2014 and the acceptance on August 20, 2015 by Google, NASA Ames Research Center and USRA of a 1152 qubit D-Wave 2X Quantum Annealing Computer (QAC), offered an exceptional opportunity to explore the potential of this technology to address the scientific prediction of global annual carbon uptake by land surface processes. At UMBC,we have collected and processed 20 months of global Level 2 light CO2 data as well as fluorescence data. In addition we have collected ARM data at 2sites in the US and Ameriflux data at more than 20 stations. J. Dorband has developed and implemented a multi-hidden layer Boltzmann Machine (BM) algorithm on the QAC. Employing the BM, we are calculating CO2 fluxes by training collocated OCO-2 level 2 CO2 data with ARM ground station tower data to infer to infer measured CO2 flux data. We generate CO2 fluxes with a regression analysis using these BM derived weights on the level 2 CO2 data for three Ameriflux sites distinct from the ARM stations. P. Gentine has negotiated for the access of K34 Ameriflux data in the Amazon and is applying a neural net to infer the CO2 fluxes. N. Talik validated the accuracy of the BM performance on the QAC against a restricted BM implementation on the IBM Softlayer Cloud with the Nvidia co-processors utilizing the same data sets. G. Nearing and K. Harrison have extended the GSFC LIS model with the NCAR Noah photosynthetic parameterization and have run a 10 year global prediction of the net ecosystem exchange. C. Pellisier is preparing a BM implementation of the Kalman filter data assimilation of CO2 fluxes. At UMBC, R. Prouty is conducting OSSE experiments with the LISNoah model on the IBM iDataPlex to simulate the impact of CO2 fluxes to improve the prediction of global annual carbon uptake. J. LeMoigne and D. Simpson have developed a neural net image registration system that will be used for MODIS ENVI and will be converted to a BM algorithm implementation on the QAC. The first integer adder has been implemented on the D-Wave 2X by A. Shehab that will perform HAAR wavelets for image compression of MODIS scenes. Finally, based on the next generations of QACs, we are preparing a 5-year performance road map on the scalability of the current QAC algorithms.

Science Data Processing↗

Models for Facilitating Government-Funded Activities in the Post-ISS LEO Ecosystem

The International Space Station National Lab (ISSNL) was established through Congressional authority in 2005 and has been managed by a nonprofit called the Center for the Advancement of Science in Space (CASIS) since 2011 to support research, development, education, and commercial activities in low-Earth orbit (LEO). NASA leadership is considering next steps for microgravity and orbital activities in LEO in preparation for the retirement of the International Space Station (ISS) and transition to Commercial LEO Destinations (CLDs) in the 2030 timeframe. Specifically, our study team within the NASA Office of Technology, Policy, and Strategy addressed the question: What are potential models for an ISS National Lab facilitating government-funded or subsidized activities on a commercial LEO platform after the transition of the ISS to one or more private platforms? To inform the trade space of potential models, we conducted over 40 discussions with stakeholders internal and external to NASA and reviewed over 35 documents related to LEO legislation, commercialization, models, and activities. Following the extensive literature review and discussions with diverse stakeholders, we defined and evaluated six models, in addition to the current ISSNL model. We assessed each model across three possible future scenarios (dynamic, steady, and limited growth of the commercial LEO market and activities) and across five stakeholder-driven model evaluation criteria (ability to meet NASA’s needs, adaptability, opportunity for collaboration, market sustainability, and equity and accessibility). The six models in the future trade space were: • Government Research Broker: Customizable research efforts on transport vehicles and CLDs • Innovation Campus: Modern terrestrial campus with workforce focus • Anchor Tenant: Long-term, substantial agreement for leasing space on a single CLD • Fee for Service: Free market approach with NASA-sponsored grants and service/data buys • Matchmaker: Neutral third-party connecting users to platforms • Institute Network: Network of separate but related efforts to enable commercial scaling The Government Research Broker model performed best across the scenarios, followed by Innovation Campus, Anchor Tenant, and Fee for Service. While Matchmaker and Institute Network exhibited positive aspects, the two models performed most favorably in future scenarios with well-established communities and markets. The six models presented in this study are representative of the potential trade space and are illustrative examples. NASA leadership can adjust models as desired to align to their priorities more closely by using combinations of the unique model features provided in our analysis. The optimal model is likely a combination of features from multiple models. Building upon this work to best position NASA and the diverse stakeholders of LEO activities for success post-ISS, further work will explore the near-term impact of preparing for the transition of the ISS to CLDs by identifying opportunities for modifying the current ISSNL-CASIS partnership. ACKNOWLEDGEMENTS We thank the many reviewers and discussants, internal and external to NASA, that contributed to the work.

Erica Rodgers↗

Contribution of Near Real Time MODIS-Based Forest Disturbance Detection Products to a National Forest Threat Early Warning System

This presentation discusses an effort to compute and post weekly MODIS forest change products for the conterminous US (CONUS), as part of national forest threat early warning system (EWS) known as the U.S. Forest Change Assessment Viewer (FCAV). The US Forest Service, NASA, USGS, and ORNL are working collaboratively to contribute weekly change products to this EWS. Large acreages of the nation's forests are being disturbed by a growing multitude of biotic and abiotic threats that can act either singularly or in combination. When common at regional scales, such disturbances can pose hazards and threats to floral and faunal bio-diversity, ecosystem sustainability, ecosystem services, and human settlements across the conterminous US. Regionally evident forest disturbances range from ephemeral periodic canopy defoliation to stand replacement mortality events due to insects, disease, fire, hurricanes, tornadoes, ice, hail, and drought. Mandated by the Healthy Forest Restoration Act of 2003, this forest threat EWS has been actively developed since 2006 and on-line since 2010. This FCAV system employs 250-meter MODIS NDVI-based forest change products as a key element of the system, providing regional and CONUS scale products in near real time every 8 days. Each forest change product in FCAV is based on current versus historical 24 day composite NDVI data gridded at 231.66 meter resolution. Current NDVI is derived from USGS eMODIS expedited products. MOD13 NDVI is used for constructing historical baselines. CONUS change products are computed for all forests as % change in the current versus historical NDVI. Change products are computed according to previous year, previous 3 years and previous 8 year historical baselines. The use of multiple baselines enables disturbance anomaly phenology to be more fully assessed. CONUS forest change products are posted each week on the FCAV, a web mapping service maintained by the National Environmental Modeling and Analysis Center. The FCAV EWS has been used to aid multiple Federal and State agency forest management activities, including aerial disturbance detection surveys, as well as rapid response preliminary assessments of timber loss due to tornadoes, regional drought studies, and fire damage assessments. The FCAV allows end-users to assess the context of apparent forest vegetation change with respect to ancillary data, such as land cover, topography, hydrology, climate variables, and administrative boundaries. Such change products are being evaluated through case studies involving comparison with higher spatial resolution satellite, aerial, and field data. The presentation will include multiple examples in which regionally evident forest disturbances were successfully detected and monitored with the MODIS-based change products, as part of the FCAV. FCAV's MODIS forest change products enable end-users (e.g., resource managers) to monitor forest hazards at regional scales throughout the year and across the nation.

Spruce, Joseph P.↗

Estimating Major Ion and Nutrient Concentrations in Mangrove Estuaries in Everglades National Park Using Leaf and Satellite Reflectance

Coastal mangrove ecosystems are under duress worldwide because of urban development, sea-level rise, and climate change, processes that are capable of changing the salinity and nutrient concentration of the water utilized by the mangroves. This study correlates long-term water chemistry in mangrove environments, located in Everglades National Park,with mangrove spectral reflectance measurements made at both the leaf and canopy scales. Spectral reflectance measurements were collected using a handheld spectrometer for leaf-level measurements and Landsat 5TMdata for regional coverage. Leaf-level reflectance data were collected from three mangrove species (i.e., red, black and white mangroves) across two regions; a tall mangrove (approximately 18m) and dwarf mangrove (1- 2 m) region. The reflectance data were then used to calculate a wide variety of biophysical reflectance indices (e.g., NDVI, EVI, SAVI) to determine signs of stress. Discrete, quarterly water samples from the surface water, groundwater, and pore water (20 and 85 cm depths) and daily autonomous surface water samples were collected at each site and analyzed for major anions (Cl(−) and SO(2(-)/4)), cations (Na(+), K(+), Mg(sup 2(+)), and Ca(sup 2(+)), total nitrogen (TN) and total phosphorus (TP).Mangrove sites that exhibited the highest salinity and ionic concentrations in the surface and subsurface water also had the lowest near-infrared reflectance at both the leaf and satellite levels. Seasonal reflectance responses were measured in the near-infrared (NIR) wavelengths at both the leaf and canopy scales and were strongly correlated with nutrient and ionic concentrations in the surface and subsurface water, even though there was no significant separability between the three mangrove species. Study sites that experienced the greatest variability in surface and subsurface water ionic concentrations also exhibited the greatest fluctuations in NIR spectral reflectance. Landsat 5TM images were able to detect tall and dwarf mangroves by the differences in spectral indices (e.g., NDVI, NDWI, and EVI) because of the variability in the background conditions amongst the environments. In addition, Landsat 5TM images spanning 16 years (1993- 2009) were successfully used to estimate the seasonal variability in ionic concentrations in the surface water across the Florida Coastal mangrove ecotone. This study has shown that water chemistry can be estimated indirectly by measuring the change in spectral response at the leaf- or satellite-scale. Furthermore, the results of this research may be extrapolated to similar coastal mangrove systems throughout the Caribbean and world-wide wherever red, black, and white mangroves occur.

Mangroves↗

Culturability as an indicator of succession in microbial communities

Successional theory predicts that opportunistic species with high investment of energy in reproduction and wide niche width will be replaced by equilibrium species with relatively higher investment of energy in maintenance and narrower niche width as communities develop. Since the ability to rapidly grow into a detectable colony on nonselective agar medium could be considered as characteristic of opportunistic types of bacteria, the percentage of culturable cells may be an indicator of successional state in microbial communities. The ratios of culturable cells (colony forming units on R2A agar) to total cells (acridine orange direct microscopic counts) and culturable cells to active cells (reduction of 5-cyano-2,3-ditolyl tetrazolium chloride) were measured over time in two types of laboratory microcosms (the rhizosphere of hydroponically grown wheat and aerobic, continuously stirred tank reactors containing plant biomass) to determine the effectiveness of culturabilty as an index of successional state. The culturable cell:total cell ratio in the rhizosphere decreased from approximately 0.25 to less than 0.05 during the first 30-50 days of plant growth, and from 0.65 to 0.14 during the first 7 days of operation of the bioreactor. The culturable cell:active cell ratio followed similar trends, but the values were consistently greater than the culturable cell:total cell ratio, and even exceeded I in early samples. Follow-up studies used a cultivation-independent method, terminal restriction fragment length polymorphisms (TRFLP) from whole community DNA, to assess community structure. The number of TRFLP peaks increased with time, while the number of culturable types did not, indicating that the general decrease in culturability is associated with a shift in community structure. The ratio of respired to assimilated C-14-labeled amino acids increased with the age of rhizosphere communities, supporting the hypothesis that a shift in resource allocation from growth to maintenance occurs with time. Results from this work indicate that the percentage of culturable cells may be a useful method for assessing the successional state of microbial communities.

NASA Center KSC↗