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Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.

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At least 181 records · Page 10
All sourcesNASA NTRSDOE OSTI
DOE OSTI2021

In Situ Machine Learning for Intelligent Data Capture on Exascale Platforms. Final Report

In many dynamic systems, interesting events occur locally in time and space. Examples of such systems include ignition events in combustion simulations, material fractures in mechanics simulations, and extreme weather events in climate simulations. Due to memory constraints and data I/O costs, current simulation workflows save data at regularly spaced time-steps, at a fixed rate determined before the start of the simulation. Often this mode of operation results in missed events of interest, necessitating a simulation restart from before an event occurred with more frequent data saves. This data saving workflow is grossly inefficient and is already a bottleneck in the computing process. We propose to develop machine learning algorithms that can detect when interesting dynamical events are occurring, triggering data saves. These machine learning algorithms will perform in situ anomaly detection to flag regions with different dynamical properties than those previously recorded. The adaptive data saves would be local in time and space to match the event of interest, thereby enabling a much more efficient workflow that will reduce data I/O costs and data storage memory requirements. The algorithms will be tested on two applications: auto-ignition simulations and climate simulations. A critical component of this project will be developing machine learning algorithms that can be deployed efficiently in situ on HPC platforms with out-of-the-box functionality. The development of in situ machine learning methods to detect anomalous events would enable a more efficient and effective workflow, in which all the relevant data are saved in a single simulation run, without re-starts or scientist intervention.

42 ENGINEERING↗
DOE OSTI2022

Machine Learning Pattern Recognition Algorithm With Applications to Coherent Laser Combination

Herein we analyze a new kind of machine learning algorithm designed to feedback stabilize coherently combined lasers. This algorithm learns differential, rather than absolute, values of action in phase space, in order to facilitate learning on initially unstable systems. Experiments have shown that this approach can control small-scale spatial beam combination with high stability. In this paper we analyze the algorithm's performance and limitations in depth, showing that it can continuously learn during operation in order to track changes. Using simulation, we extend the application to temporal combination, and show that it scales to more complex instances by combining 81 beams.

97 MATHEMATICS AND COMPUTING↗
DOE OSTI2022

Differentiation and classification of bacterial endotoxins based on surface enhanced Raman scattering and advanced machine learning

Bacterial endotoxin, a major component of the Gram-negative bacterial outer membrane leaflet, is a lipopolysaccharide shed from bacteria during their growth and infection and can be utilized as a biomarker for bacterial detection. Here, the surface enhanced Raman scattering (SERS) spectra of eleven bacterial endotoxins with an average detection amount of 8.75 pg per measurement have been obtained based on silver nanorod array substrates, and the characteristic SERS peaks have been identified. With appropriate spectral pre-processing procedures, different classical machine learning algorithms, including support vector machine, k-nearest neighbor, random forest, etc., and a modified deep learning algorithm, RamanNet, have been applied to differentiate and classify these endotoxins. It has been found that most conventional machine learning algorithms can attain a differentiation accuracy of >99%, while RamanNet can achieve 100% accuracy. Such an approach has the potential for precise classification of endotoxins and could be used for rapid medical diagnoses and therapeutic decisions for pathogenic infections.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗
DOE OSTI2021

ECNet is an evolutionary context-integrated deep learning framework for protein engineering

Abstract Machine learning has been increasingly used for protein engineering. However, because the general sequence contexts they capture are not specific to the protein being engineered, the accuracy of existing machine learning algorithms is rather limited. Here, we report ECNet (evolutionary context-integrated neural network), a deep-learning algorithm that exploits evolutionary contexts to predict functional fitness for protein engineering. This algorithm integrates local evolutionary context from homologous sequences that explicitly model residue-residue epistasis for the protein of interest with the global evolutionary context that encodes rich semantic and structural features from the enormous protein sequence universe. As such, it enables accurate mapping from sequence to function and provides generalization from low-order mutants to higher-order mutants. We show that ECNet predicts the sequence-function relationship more accurately as compared to existing machine learning algorithms by using ~50 deep mutational scanning and random mutagenesis datasets. Moreover, we used ECNet to guide the engineering of TEM-1 β-lactamase and identified variants with improved ampicillin resistance with high success rates.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2025

Identifying Vehicle Signals in Continuous Seismic Data Using Unsupervised Machine-Learning Techniques

Seismic sensors deployed near roadways effectively capture ground vibrations generated by passing vehicles. Although both traditional and machine‐learning algorithms have been utilized for analyzing such signals, independent validation of detected vehicle events remains limited. We applied two unsupervised machine‐learning algorithms, uniform manifold approximation and projection for dimension reduction, and hierarchical density‐based spatial clustering of applications with noise, to continuous seismic data collected along a road on the main campus of Oak Ridge National Laboratory. The algorithms identified seven distinct cluster labels across the entire dataset. By comparing these cluster labels with precipitation records from a nearby weather station and image‐derived labels from a local camera system, we identified one cluster associated with rainfall and another with vehicle activity. Our algorithms identified a greater number of vehicle‐related labels compared to the camera‐derived labels because seismic data are unaffected by poor lighting conditions. The arrival times of the newly detected vehicle signals corresponded well with the road’s speed limit, supporting our findings. Our algorithm outperformed the short‐term average/long‐term average method and k‐means clustering. Our results suggest that seismic data, when analyzed with machine‐learning algorithms, can complement existing vehicle monitoring systems, particularly under challenging environmental conditions.

Chai, Chengping [Oak Ridge National Laboratory (OR↗
DOE OSTI2017

Deep learning for computational chemistry

The rise and fall of artificial neural networks is well documented in the scientific literature of both the fields of computer science and computational chemistry. Yet almost two decades later, we are now seeing a resurgence of interest in deep learning, a machine learning algorithm based on “deep” neural networks. Within the last few years, we have seen the transformative impact of deep learning the computer science domain, notably in speech recognition and computer vision, to the extent that the majority of practitioners in those field are now regularly eschewing prior established models in favor of deep learning models. In this review, we provide an introductory overview into the theory of deep neural networks and their unique properties as compared to traditional machine learning algorithms used in cheminformatics. By providing an overview of the variety of emerging applications of deep neural networks, we highlight its ubiquity and broad applicability to a wide range of challenges in the field, including QSAR, virtual screening, protein structure modeling, QM calculations, materials synthesis and property prediction. In reviewing the performance of deep neural networks, we observed a consistent outperformance against non neural networks state-of-the-art models across disparate research topics, and deep neural network based models often exceeded the “glass ceiling” expectations of their respective tasks. Coupled with the maturity of GPU-accelerated computing for training deep neural networks and the exponential growth of chemical data on which to train these networks on, we anticipate that deep learning algorithms will be a useful tool and may grow into a pivotal role for various challenges in the computational chemistry field.

Computational Chemistry↗
DOE OSTI2020

Evaluation of global terrestrial evapotranspiration using state-of-the-art approaches in remote sensing, machine learning and land surface modeling

Abstract. Evapotranspiration (ET) is critical in linking global water, carbon and energy cycles. However, direct measurement of global terrestrial ET is not feasible. Here, we first reviewed the basic theory and state-of-the-art approaches for estimating global terrestrial ET, including remote-sensing-based physical models, machine-learning algorithms and land surface models (LSMs). We then utilized 4 remote-sensing-based physical models, 2 machine-learning algorithms and 14 LSMs to analyze the spatial and temporal variations in global terrestrial ET. The results showed that the ensemble means of annual global terrestrial ET estimated by these three categories of approaches agreed well, with values ranging from 589.6 mm yr-1 (6.56×104 km3 yr-1) to 617.1 mm yr-1 (6.87×10 4 km3 yr -1 ). For the period from 1982 to 2011, both the ensembles of remote-sensing-based physical models and machine-learning algorithms suggested increasing trends in global terrestrial ET (0.62 mm yr -2 with a significance level of p<0.05 and 0.38 mm yr -2 with a significance level of p<0.05, respectively). In contrast, the ensemble mean of the LSMs showed no statistically significant change (0.23 mm yr -2 , p>0.05), although many of the individual LSMs reproduced an increasing trend. Nevertheless, all 20 models used in this study showed that anthropogenic Earth greening had a positive role in increasing terrestrial ET. The concurrent small interannual variability, i.e., relative stability, found in all estimates of global terrestrial ET, suggests that a potential planetary boundary exists in regulating global terrestrial ET, with the value of this boundary being around 600 mm yr -1 . Uncertainties among approaches were identified in specific regions, particularly in the Amazon Basin and arid/semiarid regions. Improvements in parameterizing water stress and canopy dynamics, the utilization of new available satellite retrievals and deep-learning methods, and model–data fusion will advance our predictive understanding of global terrestrial ET.

58 GEOSCIENCES↗
DOE OSTI2023

GOOML (Geothermal Operational Optimization with Machine Learning) [SWR-23-01]

The Geothermal Operational Optimization with Machine Learning (GOOML) is a partnership between NREL and Upflow, NZ, awarded in response to the U.S. Department of Energy's Geothermal Technologies Office's Funding Opportunity Announcement (FOA) to expand the role of advanced analytics and automation in geothermal operations through machine learning. Partnering with industry (Contact Energy Limited ("Contact"), Ngati Tuwharetoa Geothermal Assets Limited ("NTGA"), Ormat Technologies Inc. ("Ormat") and Flow State Solutions Limited ("FSS"), GOOML was created to improve the operational efficiency of geothermal power plant steam fields through the analysis of historical operational data and the application of custom machine learning algorithms. NREL's contributions include machine learning, coding, and data management expertise as well as access to high-performance compute solutions. GOOML can increase geothermal operational efficiency through development of a digital system twin that can be utilized to provide optimal geothermal operating conditions for real-world geothermal fields. GOOML allows users to analyze field production histories in detail, develop models, and train machine learning algorithms to identify opportunities for increased geothermal efficiency, detect potential trouble, and allow predictive scenario modeling. Preliminary experiments have demonstrated a potential to increase total generation by as much as 12% through ML optimization of the utilization of existing steam field resources.

Buster, Grant↗
DOE OSTI2016

Developing a Learning Algorithm-Generated Empirical Relaxer

One of the main difficulties when running Arbitrary Lagrangian-Eulerian (ALE) simulations is determining how much to relax the mesh during the Eulerian step. This determination is currently made by the user on a simulation-by-simulation basis. We present a Learning Algorithm-Generated Empirical Relaxer (LAGER) which uses a regressive random forest algorithm to automate this decision process. We also demonstrate that LAGER successfully relaxes a variety of test problems, maintains simulation accuracy, and has the potential to significantly decrease both the person-hours and computational hours needed to run a successful ALE simulation.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗
DOE OSTI2018

An automated isotope identification and quantification algorithm for isotope mixtures in low-resolution gamma-ray spectra

There is a need to develop an automated isotope identification and quantification algorithm that can perform well using low-resolution gamma-ray detectors. The algorithm should be able to perform well on spectra that contain a mixture of many isotopes as well as in cases where spectral features are difficult to analyze. Due to the low resolution of these detectors, spectra of isotope mixtures becomes complicated to identify when features overlap. Previous research applying machine learning algorithms to isotope identification has been promising. Further work is needed to demonstrate the limits of machine learning algorithms when applied to identifying mixtures of isotopes and spectra where features are not obvious. Because machine learning algorithms use abstract features of the spectrum, such as the shape of overlapping peaks and Compton continuum, they are a natural choice for analyzing isotope mixtures. In this work, an artificial neural network (ANN) has be trained to calculate the relative activities of 29 isotopes in a spectrum. The ANN is trained with simulated gamma-ray spectra, allowing custom datasets to be generated for specific identification tasks. The algorithms performance on simulated spectra without apparent features and on simulated isotope mixtures are both analyzed.

38 RADIATION CHEMISTRY, RADIOCHEMISTRY, AND NUCLEA↗
DOE OSTI2019

Machine Learning Assisted Synthesis of Metal–Organic Nanocapsules

Herein, we report machine learning algorithms by training data sets from a set of both successful and failed experiments for studying the crystallization propensity of metal–organic nanocapsules (MONCs). Among a variety of studied machine learning algorithms, XGBoost affords the highest prediction accuracy of >90%. The derived chemical feature scores that determine importance of reaction parameters from the XGBoost model assist to identify synthesis parameters for successfully synthesizing new hierarchical structures of MONCs, showing superior performance to a well-trained chemist. This work demonstrates that the machine learning algorithms can assist the chemists to faster search for the optimal reaction parameters from many experimental variables, whose features are usually hidden in the high-dimensional space.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗
DOE OSTI2021

Anomaly detection in the Zwicky Transient Facility DR3

We present results from applying the SNAD anomaly detection pipeline to the third public data release of the Zwicky Transient Facility (ZTF DR3). The pipeline is composed of three stages: feature extraction, search of outliers with machine learning algorithms, and anomaly identification with followup by human experts. Our analysis concentrates in three ZTF fields, comprising more than 2.25 million objects. A set of four automatic learning algorithms was used to identify 277 outliers, which were subsequently scrutinized by an expert. From these, 188 (68 per cent) were found to be bogus light curves – including effects from the image subtraction pipeline as well as overlapping between a star and a known asteroid, 66 (24 per cent) were previously reported sources whereas 23 (8 per cent) correspond to non-catalogued objects, with the two latter cases of potential scientific interest (e.g. one spectroscopically confirmed RS Canum Venaticorum star, four supernovae candidates, one red dwarf flare). Moreover, using results from the expert analysis, we were able to identify a simple bi-dimensional relation that can be used to aid filtering potentially bogus light curves in future studies. We provide a complete list of objects with potential scientific application so they can be further scrutinised by the community. These results confirm the importance of combining automatic machine learning algorithms with domain knowledge in the construction of recommendation systems for astronomy. Our code is publicly available.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2020

Deep Learning for Land Cover Classification Using Only a Few Bands

There is an emerging interest in using hyperspectral data for land cover classification. The motivation behind using hyperspectral data is the notion that increasing the number of narrowband spectral channels would provide richer spectral information and thus help improve the land cover classification performance. Although hyperspectral data with hundreds of channels provide detailed spectral signatures, the curse of dimensionality might lead to degradation in the land cover classification performance. Moreover, in some practical applications, hyperspectral data may not be available due to cost, data storage, or bandwidth issues, and RGB and near infrared (NIR) could be the only image bands available for land cover classification. Light detection and ranging (LiDAR) data is another type of data to assist land cover classification especially if the land covers of interest have different heights. In this paper, we examined the performance of two Convolutional Neural Network (CNN)-based deep learning algorithms for land cover classification using only four bands (RGB+NIR) and five bands (RGB+NIR+LiDAR), where these limited number of image bands were augmented using Extended Multi-attribute Profiles (EMAP). The deep learning algorithms were applied to a well-known dataset used in the 2013 IEEE Geoscience and Remote Sensing Society (GRSS) Data Fusion Contest. With EMAP augmentation, the two deep learning algorithms were observed to achieve better land cover classification performance using only four bands as compared to that using all 144 hyperspectral bands.

58 GEOSCIENCES↗
DOE OSTI2016

SU-F-P-20: Predicting Waiting Times in Radiation Oncology Using Machine Learning

Purpose: Waiting times remain one of the most vexing patient satisfaction challenges facing healthcare. Waiting time uncertainty can cause patients, who are already sick or in pain, to worry about when they will receive the care they need. These waiting periods are often difficult for staff to predict and only rough estimates are typically provided based on personal experience. This level of uncertainty leaves most patients unable to plan their calendar, making the waiting experience uncomfortable, even painful. In the present era of electronic health records (EHRs), waiting times need not be so uncertain. Extensive EHRs provide unprecedented amounts of data that can statistically cluster towards representative values when appropriate patient cohorts are selected. Predictive modelling, such as machine learning, is a powerful approach that benefits from large, potentially complex, datasets. The essence of machine learning is to predict future outcomes by learning from previous experience. The application of a machine learning algorithm to waiting time data has the potential to produce personalized waiting time predictions such that the uncertainty may be removed from the patient’s waiting experience. Methods: In radiation oncology, patients typically experience several types of waiting (eg waiting at home for treatment planning, waiting in the waiting room for oncologist appointments and daily waiting in the waiting room for radiotherapy treatments). A daily treatment wait time model is discussed in this report. To develop a prediction model using our large dataset (with more than 100k sample points) a variety of machine learning algorithms from the Python package sklearn were tested. Results: We found that the Random Forest Regressor model provides the best predictions for daily radiotherapy treatment waiting times. Using this model, we achieved a median residual (actual value minus predicted value) of 0.25 minutes and a standard deviation residual of 6.5 minutes. This means that the majority of our estimates are within 6.5 minutes of the actual wait time. Conclusion: The goal of this project was to define an appropriate machine learning algorithm to estimate waiting times based on the collective knowledge and experience learned from previous patients. Our results offer an opportunity to improve the information that is provided to patients and family members regarding the amount of time they can expect to wait for radiotherapy treatment at our centre. AJ acknowledges support by the CREATE Medical Physics Research Training Network grant of the Natural Sciences and Engineering Research Council (Grant number: 432290) and from the 2014 Q+ Initiative of the McGill University Health Centre.

60 APPLIED LIFE SCIENCES↗
DOE OSTI2021

NgramPPM: Compression Analytics without Compression

Arithmetic Coding (AC) using Prediction by Partial Matching (PPM) is a compression algorithm that can be used as a machine learning algorithm. This paper describes a new algorithm, NGram PPM. NGram PPM has all the predictive power of AC/PPM, but at a fraction of the computational cost. Unlike compression-based analytics, it is also amenable to a vector space interpretation, which creates the ability for integration with other traditional machine learning algorithms. AC/PPM is reviewed, including its application to machine learning. Then NGram PPM is described and test results are presented, comparing them to AC/PPM.

97 MATHEMATICS AND COMPUTING↗
DOE OSTI2022

Perspectives on Polyolefin Catalysis in Microfluidics for High-Throughput Screening: A Minireview

Polyolefins are the largest produced plastics in the world which traditionally employ continuous stirred tank reactors and fluidized bed reactors for commercial production. The operating condition, reaction kinetics, and molecular interactions inside the reactor strongly affect the polyolefin properties, which require stringent process control in conventional procedures. Understanding the catalytic pathway, behavior of polymer particles and effect of reactor conditions are essential for designing specific polymer properties, namely the molecular weight, chain length, polydispersity, etc. Microfluidics can play a significant role in designing polymers tailored to the user needs. Smaller channel dimensions help obtain uniform reaction conditions over the length of the microfluidic reactor in a controlled environment. With real-time monitoring techniques in microfluidics, even single particle growth of polymer can be studied to understand the parameters affecting the polymer properties. High throughput microfluidics can help catalyst screening in a short duration with less consumption of reagents generating less waste. When supplemented with efficient machine learning algorithms, automated high throughput microfluidics has the potential to rapidly optimize the process and develop new knowledge even with a limited data set. When trained on data sets generated using microfluidic experiments that are designed efficiently with working knowledge of the process, machine learning algorithms can provide the relationship between the multivariable parameters space and polymer properties, which is not possible with the traditional statistical methods and interpolation techniques. Here, the rise in the utilization of microfluidics, with the advancement of machine learning algorithms, for polyolefin catalysis, highlights the importance of microfluidics for catalyst discovery, parameter optimization, and understanding reaction pathway for producing polymers with specific properties for specialized applications.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗
DOE OSTI2019

Process Image Analysis using Big Data, Machine Learning, and Computer Vision

Within the DOE complex, 3013 canisters are used to store Pu-bearing waste. Wall penetration due to corrosion, specifically stress corrosion cracking, is considered to be the most likely cause of failure over the 50-year lifetime of the canisters. This project has 2 objectives: The first is the development of machine learning algorithms to identify the presence of corrosion from a very large set of images generated by laser confocal microscope scanning of 3013 canister used to store Pu oxides. This portion of the LDRD constitutes image analysis of a metal surface for the presence of corrosion. The image processing algorithms developed for this project will provide a suitable basis for analysis of other types of corrosion data, which can be produced in vast quantities using modern devices. The second component of the LDRD consists of the development of machine learning algorithms that obtain molecular mechanics force-fields from ab-initio Density Functional Theory (DFT) calculations for corrosive attack by chlorides on 304L or 316L stainless steel. The goal of this latter component is to determine means for mitigating corrosion on a fundamental level, including coatings, welding methods, metal composition, etc. Force-field modeling is necessary for this endeavor because the incipience and progression of corrosion is the governed by molecular structures, grain boundaries, dislocations and surface structures represented by large numbers of atoms. Although DFT calculations are extremely adept at describing molecular scale processes, they are computationally expensive making them ill-suited for calculations of more than several hundred atoms, especially for the repeated applications inherent in material design. Fortunately, force-field methods provide an avenue for viable molecular-scale calculations involving the numbers of atoms involved in corrosion processes. The accuracy of the force-field calculations depends strongly on the accuracy of the force-field model, which is extremely difficult and time-consuming to derive from either data or ab-initio calculations. The use of machine learning algorithms has the potential to make the calculation of force-fields much more efficient but has not been explored significantly for corrosion processes. If shown to be viable, the technique would have wide -ranging impact on design of corrosion resistant materials and on the mitigation of corrosion in existing process systems.

12 MANAGEMENT OF RADIOACTIVE AND NON-RADIOACTIVE W↗
DOE OSTI2024

Hls4ml Synthesis Testing

HLS4ml (high level synthesis for machine learning) Is a Python package used to translate commonly used open-source machine learning models into HLS. This is useful in machine learning applications on FPGAs. Machine learning algorithms are only as fast as the hardware that they are used on, and some applications require high speed without sacrificing accuracy. In these situations, an FPGA is a good choice since it is faster than a CPU or a GPU, but programming an FPGA is difficult. This is where HLS4ml can be used to simplify the process, as a well-known learning model can be converted to HLS and more easily deployed onto an FPGA. There are many use cases for a machine learning algorithm running on an FPGA. For example, detectors in a particle accelerator cannot keep every event that they detect, and so a computer must decide which events to keep and which to discard. Using an FPGA with a machine learning algorithm would be a good way to keep as many events as possible.

Swanson, Caiden↗