Circulation characteristics of bat coronaviruses linked to bat ecological factors in Korea, 2021–2022
Not Available
Kim, Min Chan↗
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Rapid organic carbon spiraling in a headwater stream linked with streamflow, biogeochemistry, and canopy phenology
Headwater streams are abundant worldwide and important to global biogeochemical cycles, serving as critical processors and transporters of C. C spiraling is a useful way to understand the retention and mineralization of organic C (OC) in streams. However, analyses of seasonal and interannual variability in OC spiraling are currently limited. In this study, we aimed to understand the temporal patterns and driving mechanisms of OC spiraling, which will inform our understanding of future OC changes under climate change. We used 7 y of daily data in a small headwater stream (Walker Branch, Tennessee, USA) to assess seasonal and interannual variability in OC spiraling length (S OC ) and mineralization velocity (v fOC ), as well as their potential related variables. On average, S OC in Walker Branch was ~10× shorter than in previously studied small streams, indicating strong connections between the water column and the benthic environment where OC mineralization mostly takes place. OC spiraling was faster during the more biologically active periods of spring and autumn compared with more elongated OC spiraling in summer and winter, when OC retention was lower and downstream transport was higher. Gross primary production (GPP) was most strongly related to S OC and v fOC . Photosynthetically active radiation (PAR) and NO 3 − were also positively and negatively related to v fOC , respectively. Trends toward earlier and longer canopy cover and reduced GPP and PAR may result in longer S OC and slower v fOC , reducing localized instream processing of OC and potentially shunting more OC downstream. However, long-term observations indicate reduced NO 3 − at Walker Branch, suggesting opposing effects to those of GPP and PAR, leading to faster v fOC and greater OC retention. Time-series analyses of OC spiraling in streams can enhance our understanding of current and future responses of OC processing and downstream transport to climate change, as well as implications for downstream OC dynamics.
biological activity↗
Methane emission hotspots in a boreal forest-fen mosaic potentially linked to deep taliks
Permafrost thaw is transforming boreal forests into mosaics of wetlands and drier uplands. Topographic controls on hydrological and ecological conditions impact methane (CH 4 ) fluxes, contributing to uncertainty in local and regional CH 4 budgets and underlying drivers. The objective of this study was to explore CH 4 fluxes and their drivers in a transitioning boreal forest-fen ecosystem (Goldstream Valley, Alaska, USA). This landscape is characterized by thawing discontinuous permafrost and heterogeneous mosaics of fens, collapse-scar channels, and small mounds of permafrost soils. From a survey in July 2021, observed chamber CH4 fluxes included fen areas with intermediate to very high emissions (29.8–635.3 mg CH 4 m −2 d −1 ), clustered locations with CH 4 uptake (−2.11 to −0.7 mg CH 4 m −2 d −1 ), and three anomalous emission hotspots (342.4–772.4 mg CH 4 m −2 d −1 ) that were located near samples with lower emissions. Some surface and near-surface variables partially explained the spatial variation in CH 4 flux. Log-transformed CH 4 flux had a positive linear relationship with soil moisture at 20 cm depth ( R 2 = 0.31, p -value < 1e-5) and negative linear relationships with microtopography ( R 2 = 0.13, p -value < 0.006) and slope ( R 2 = 0.28, p -value < 2e-5). Methane emissions generally occurred in flat, wet, graminoid-dominated fens, whereas CH 4 uptake occurred on permafrost mounds dominated by feather mosses and woody vegetation. However, the CH 4 hotspots occurred on drier, slightly sloped locations with low or undetectable near-surface methanogen abundance, suggesting that CH 4 was produced in deeper soils. When the hotspot samples were omitted, log-transformed CH 4 flux had a positive linear relationship with near-surface methanogen abundance ( R 2 = 0.29, p -value = 0.0023), and stronger linear relationships with soil moisture, slope, and soil macronutrient concentrations. Our findings suggest that some CH 4 emission hotspots could arise from CH 4 in deep taliks. The inference that methanogenesis occurs in deep taliks was strengthened by the identification of intrapermafrost taliks across the study area using low-frequency geophysical induction. This study assesses surface spatial heterogeneity in the context of subsurface permafrost conditions and highlights the complexity of CH 4 flux patterns in transitioning forest-wetland ecosystems. To better inform regional CH 4 budgets, further research is needed to understand the spatial distribution of terrestrial CH 4 hotspots and to resolve their surface, near-surface, and subsurface drivers.
boreal↗
Microbial community dynamics in the soil-root continuum are linked with plant species turnover during secondary succession
Grazing exclusion and land abandonment are commonly adopted to restore degraded ecosystems in semiarid and arid regions worldwide. However, the temporal variation in the soil- versus root-associated microbiome over plant species turnover during secondary succession has rarely been quantified. Using the chronosequence restored from fenced grassland and abandoned farmlands on the Loess Plateau of China, we characterized the dynamics of the soil- and root-associated microbiome of host plant with different dominance statuses during secondary succession from 0 to 40 years. Our results revealed that the root microhabitat, the host plant and their interactions were the main contributors to the bacterial community shift (R 2 = 15.5%, 8.1%, and 22.3%, respectively), and plant interspecies replacement had a greater effect on the shift in the root-associated microbial community than intraspecies replacement did during succession. The root-associated bacterial community of pioneer plants was particularly responsive to succession, especially the endosphere community. Endosphere microbial diversity was positively correlated with host plant coverage change, and the diversity and abundance of taxon recruitment into the endosphere of pioneer plants from the surrounding environment decreased as succession progressed. The community assembly processes also indicated that the endosphere microbiota are strongly selected in younger host plants, whereas stochastic processes dominate in aged host plants. Our study provides evidence of the unique response of the root-associated microbiome to the replacement of plant species during secondary succession, and the function of endosphere microbes should be considered when studying plant–microbe feedback.
59 BASIC BIOLOGICAL SCIENCES↗
Linking transients to their host galaxies – II. A comparison of host galaxy properties and rate dependencies across supernova types
ABSTRACT We use the latest data set of supernova (SN) host galaxies to investigate how the host properties – stellar mass, star formation rate (SFR), metallicity, absolute magnitude, and colour–differ across SN types, with redshift-driven selection effects controlled. SN Ib and Ic host galaxies, on average, are more massive, metal-rich, and redder than SN II hosts. For subtypes, SN Ibn and Ic-BL have bluer hosts than their normal SN Ib and Ic siblings; SN IIb has consistent host properties with SN Ib, while hosts of SN IIn are more metal-rich than those of SN II. Hydrogen-deficient superluminous SNe feature bluer and lower luminosity hosts than most subtypes of core-collapse supernova (CC SN). Assuming simple proportionality of CC SN rates and host SFRs does not recover the observed mean host properties; either a population of long-lived progenitors or a metallicity-dependent SN production efficiency better reproduces the observed host properties. Assuming the latter case, the rates of SN II are insensitive to host metallicity, but the rates of SN Ib and Ic are substantially enhanced in metal-rich hosts by a factor of $\sim 10$ per dex increase in metallicity. Hosts of SN Ia are diverse in their observed properties; subtypes including SN Ia-91T, Ia-02cx, and Ia-CSM prefer star-forming hosts, while subtypes like SN Ia-91bg and Ca-rich prefer quiescent hosts. The rates of SN Ia-91T, Ia-02cx, and Ia-CSM are closely dependent on, or even proportional to, their host SFRs, indicating relatively short-lived progenitors. Conversely, the rates of SN Ia-91bg and Ca-rich transients are proportional to the total stellar mass, favouring long-lived progenitors.
Qin, Yu-Jing (ORCID:0000000336586026)↗
Phosphate Limitation Responses in Marine Green Algae Are Linked to Reprogramming of the tRNA Epitranscriptome and Codon Usage Bias
Marine algae are central to global carbon fixation, and their productivity is dictated largely by resource availability. Reduced nutrient availability is predicted for vast oceanic regions as an outcome of climate change; however, there is much to learn regarding response mechanisms of the tiny picoplankton that thrive in these environments, especially eukaryotic phytoplankton. Here, we investigate responses of the picoeukaryote Micromonas commoda, a green alga found throughout subtropical and tropical oceans. Under shifting phosphate availability scenarios, transcriptomic analyses revealed altered expression of transfer RNA modification enzymes and biased codon usage of transcripts more abundant during phosphate-limiting versus phosphate-replete conditions, consistent with the role of transfer RNA modifications in regulating codon recognition. To associate the observed shift in the expression of the transfer RNA modification enzyme complement with the transfer RNAs encoded by M. commoda, we also determined the transfer RNA repertoire of this alga revealing potential targets of the modification enzymes. Codon usage bias was particularly pronounced in transcripts encoding proteins with direct roles in managing phosphate limitation and photosystem-associated proteins that have ill-characterized putative functions in “light stress.” The observed codon usage bias corresponds to a proposed stress response mechanism in which the interplay between stress-induced changes in transfer RNA modifications and skewed codon usage in certain essential response genes drives preferential translation of the encoded proteins. Collectively, we expose a potential underlying mechanism for achieving growth under enhanced nutrient limitation that extends beyond the catalog of up- or downregulated protein-encoding genes to the cell biological controls that underpin acclimation to changing environmental conditions.
59 BASIC BIOLOGICAL SCIENCES↗
Steroid responsiveness in alcohol-associated hepatitis is linked to glucocorticoid metabolism, mitochondrial repair, and heat shock proteins
Alcohol-associated hepatitis (AH) is one of the clinical presentations of alcohol-associated liver disease. AH has poor prognosis, and corticosteroids remain the mainstay of drug therapy. However, ~40% of patients do not respond to this treatment, and the mechanisms underlying the altered response to corticosteroids are not understood. The current study aimed to identify changes in hepatic protein expression associated with responsiveness to corticosteroids and prognosis in patients with AH. Patients with AH were enrolled based on the National Institute on Alcohol Abuse and Alcoholism inclusion criteria for acute AH and further confirmed by a diagnostic liver biopsy. Proteomic analysis was conducted on liver samples acquired from patients with AH grouped as nonresponders (AH-NR, n = 7) and responders (AH-R, n = 14) to corticosteroids, and nonalcohol-associated liver disease controls (n = 10). The definition of responders was based on the clinical prognostic model, the Lille Score, where a score < 0.45 classified patients as AH-R and a score > 0.45 as AH-NR. Primary outcomes used to assess steroid response were Lille Score (eg, improved liver function) and survival at 24 weeks. Reduced levels of the glucocorticoid receptor and its transcriptional co-activator, glucocorticoid modulatory element-binding protein 2, were observed in the hepatic proteome of AH-NR versus AH-R. The corticosteroid metabolizing enzyme, 11-beta-hydroxysteroid dehydrogenase 1, was increased in AH-NR versus AH-R along with elevated mitochondrial DNA repair enzymes, while several proteins of the heat shock pathway were reduced. Analysis of differentially expressed proteins in AH-NR who survived 24 weeks relative to AH-NR nonsurvivors revealed several protein expression changes, including increased levels of acute phase proteins, elevated coagulation factors, and reduced mast cell markers. This study identified hepatic proteomic changes that may predict responsiveness to corticosteroids and mortality in patients with AH.
59 BASIC BIOLOGICAL SCIENCES↗
Origin of Intrinsically Low Thermal Conductivity in a Garnet-Type Solid Electrolyte: Linking Lattice and Ionic Dynamics with Thermal Transport
Understanding thermal transport in solid electrolytes is essential for improving the performance, reliability, and safety of all-solid-state batteries. Garnet-type lithium-ion conductors are promising candidates for solid electrolytes, yet their thermal-transport mechanisms remain poorly understood. Here, we connect the lattice and ion dynamics of single-crystal garnet-type Li 6.5 La 3 Zr 1.5 Ta 0.5 O 12 to its intrinsically low thermal conductivity. Our study reveals that the single crystals grown by the floating-zone method exhibit remarkably low glasslike thermal conductivity. Using first-principles calculations and inelastic-neutron-scattering measurements, we identify both the acoustic and numerous optical phonon modes, which stem from the complex crystal structure of the material. Notably, a low-energy optical branch exhibits an avoided crossing with acoustic phonons near 7 meV. These optical modes can enhance the scattering of heat-carrying acoustic phonons and reduce thermal conductivity. Furthermore, the calculated Grüneisen parameters are large, especially for the vibrational modes around 6 meV, indicating strong anharmonicity, with a noticeable contribution from lithium-ion vibrations. A two-channel thermal-transport model is employed to describe the weak temperature dependence of the thermal conductivity, which can be attributed to the substantial contribution of diffuson transport facilitated by the abundance of optical phonons and intrinsic anharmonicity. These results offer valuable insights into the thermal transport in a broad class of ionic conductors of interest for energy conversion and storage applications.
Ab initio calculations↗
Multicarrier Spread Spectrum Communications With Noncontiguous Subcarrier Bands for HF Skywave Links
Existing high-frequency (HF) radio platforms offer robust performance against the volatile HF propagation channel. However, the growing traffic across the band contests the reliability of these systems. While techniques to mitigate the effects of narrowband interference have been thoroughly explored, they are insufficient against wideband interference or when the transmission band is occupied by numerous scattered users. To improve reliability in these congested channel conditions, we propose a filter-bank based multicarrier spread-spectrum waveform with noncontiguous subcarrier bands. Using noncontiguous subcarrier bands enables the system to at once leverage the robustness of a wideband system while retaining the frequency agility of a narrowband system. In this study, we modify a filter-bank transmitter structure to accommodate noncontiguous subcarrier bands and consider several immediate impacts of this change, such as elevated peak-to-average-power ratios (PAPRs). A receiver architecture to process the noncontiguous spread-spectrum signal is also introduced, along with details regarding wideband channel estimation. Finally, we develop efficient transmitter and receiver structures to support practical system implementations. We conclude by comparing the performance of contiguous and noncontiguous systems through both simulation and over-the-air testing. The results show that the noncontiguous system remains robust in typical HF channels while significantly outperforming the contiguous system in congested spectral conditions.
(PAPR↗
Linking Threat Agents to Targeted Organizations: A Pipeline for Enhanced Cybersecurity Risk Metrics
In this study, we present a methodology leveraging Large Language Models (LLMs) to transform Cybersecurity Threat Intelligence (CTI) narratives into actionable insights for individual organizations. Our approach automates the extraction of machine-readable adversary SKRAM (Skills, Knowledge, Resources, Authorities, and Motivation) attributes from open-source reports, extending LLM utility beyond typical interactions. This innovation enables precise, automated assessments of cybersecurity risks posed by various adversaries. Using a chain-of-thought and multi-shot prompting strategy, our methodology advances the automation of cybersecurity feature extraction for new machine-learning models that predict the risk of adversary targeting. This approach is refined using a substantial dataset of over 150 analyst-validated threat reports and synthetic organizational data from 900 companies. Here, by bootstrapping the training data with a rule-based heuristic over synthetic data, we have developed a high-accuracy machine-learning model that allows entities to dynamically prioritize threats and defensive actions.
Cyber Threat Intelligence↗
First Demonstration of an O-Band Coherent Link for Intra-Data Center Applications
Not provided.
Engineering↗
Dual-Polarization Optical Costas Loop for DSP-Free Homodyne Short-Reach Links
Not Available
Liu, Junqian [Electrical and Computer Engineering ↗
A Monolithic O-Band Coherent Optical Receiver for Energy-Efficient Links
Not Available
Movaghar, Ghazal↗
A Low-Power Data Link for Stitched Pixel Sensors
Explore the source record for details and available documents.
47 OTHER INSTRUMENTATION↗
Optimizing Non-Terrestrial Hybrid RF/FSO Links With Reinforcement Learning: Navigating Through Clouds
In the pursuit of ubiquitous broadband connectivity, there has been a significant shift towards the vertical expansion of communication networks into space, particularly through the exploitation of low Earth orbit (LEO) satellite constellations, which are favored for their relatively low latency. However, this approach faces many challenges that need to be addressed, including atmospheric turbulence, high path loss, and dynamic cloud formations. High-altitude pseudo-satellites (HAPS) have emerged as promising relaying layers between LEO satellites and ground stations, enhancing coverage, latency, and direct terrestrial user connectivity. While radio frequency (RF) bands suffer from congestion and limited bandwidth, free space optical (FSO) communications offer higher data rates, but are susceptible to misalignment and weather-induced signal degradation. To address these challenges, a hybrid RF/FSO approach has been proposed to take advantage of both technologies by dynamic switching between RF and FSO based on propagation channel conditions. This paper introduces a reinforcement learning-based algorithm designed to optimize the trajectory of HAPS, maneuver around cloudy areas, and seamlessly switch between the RF and FSO communication modes to maximize the achievable capacity. The proposed approach aims to maximize system performance by intelligently adapting to environmental conditions and offering a promising solution for next-generation space communication networks.
actor-critic algorithm↗
Canopy Structure Exhibits Linear and Nonlinear Links to Biome‐Level Maximum Light Use Efficiency
Maximum light use efficiency (ε max ) represents a plant's capacity to convert light into carbon during photosynthesis. Although prior studies have explored ε max variations between sunlit and shaded leaves or its temporal ties to canopy structure, the spatial relationship between biome-level ε max (ε biome ) and biome structure remains poorly understood. We analysed data from 320 eddy covariance sites (~855 site-years) with satellite-derived near-infrared reflectance of vegetation (NIRv) and leaf area index (LAI). We introduced NIRvN (NIRv/LAI) to isolate architectural effects from leaf quantity. Site-level ε max was calculated and aggregated by biome to derive ε biome . Results show ε biome rises nonlinearly with NIRv and LAI, saturating at high LAI, with crops and tropical evergreen forests deviating from this trend. Conversely, ε biome decreases linearly with increasing NIRvN, indicating that biomes with greater NIR scattering efficiency exhibit lower ε biome . These results enhance understanding of structural influences on carbon uptake across global biomes.
54 ENVIRONMENTAL SCIENCES↗
A genomic region associated with iteroparous spawning phenology is linked with age‐at‐maturity in female steelhead trout
Abstract Age‐at‐maturity and iteroparity are two life history variations of steelhead trout ( Oncorhynchus mykiss ) that are believed to increase population resilience and stability. While repeat‐spawning individuals are thought to have historically made up a substantial portion of the reproductive population in the Columbia River and the majority of females still attempt outmigration as kelts, return rates of repeat‐spawner are low throughout the basin and below 1% for the furthest migrating stocks. Notably, outmigrating adults exhibit variation in rematuration phenology, displaying either “consecutive” (reproduce immediately the following season) or “skip” (delay spawning for future seasons) spawning patterns. Here, we use low coverage whole genome sequencing of consecutive versus skip spawning female Columbia River steelhead from two populations to test for genomic differences between these two iteroparous phenotypes. We identified genomic regions on several chromosomes which were associated with the phenology of iteroparity, including a region on chromosome 25 containing two genes, estradiol receptor beta ( ER β) and glycoprotein hormone beta‐5 ( GPHB5 ), which, in mammals, are estrogen‐sensitive and expressed in reproductive tissues. Allele frequencies in this ER β/ GPHB5 region differed among female steelhead of different age at maturity, but not males. These genes also shared an island of linkage disequilibrium with the SIX6 gene, 600Kbp away on the same chromosome, a region of known association with age‐at‐maturity. These observations contribute to growing evidence that age‐at‐maturity and the phenology of iteroparity are determined by overlapping physiological processes and genetic pathways.
Willis, Stuart↗