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At least 181 records · Page 10
All sourcesNASA NTRSDOE OSTI
NASA NTRS1995

A 'crytic' microbial mat: A new model ecosystem for extant life on Mars

If life were present on Mars today, it would face potentially lethal environmental conditions such as a lack of water, frigid temperatures, ultraviolet radiation, and soil oxidants. In addition, the Viking missions did not detect near-surface organic carbon available for assimilation. Autotrophic organisms that lived under a protective layer of sand or gravel would be able to circumvent the ultraviolet radiation and lack of fixed carbon. Two terrestrial photosynthetic near-surface microbial communities have been identified, one in the inter- and supertidal of Laguna Ojo de Liebere (Baja California Sur, Mexico) and one in the acidic gravel near several small geysers in Yellowstone National Park (Wyoming, U.S.A.). Both communities have been studied with respect to their ability to fix carbon under different conditions, including elevated levels of inorganic carbon. Although these sand communities have not been exposed to the entire suite of Martian environmental conditions simultaneously, such communities can provide a useful model ecosystem for a potential extant Martian biota.

Rothschild, L. J.↗
NASA NTRS1994

Development of an Intermediate-Scale Aerobic Bioreactor to Regenerate Nutrients from Inedible Crop Residues

Three Intermediate-Scale Aerobic Bioreactors were designed, fabricated, and operated. They utilized mixed microbial communities to bio-degrade plant residues. The continuously stirred tank reactors operated at a working volume of 8 L, and the average oxygen mass transfer coefficient, k(sub L)a, was 0.01 s(exp -1). Mixing time was 35 s. An experiment using inedible wheat residues, a replenishment rate of 0.125/day, and a solids loading rate of 20 gdw/day yielded a 48% reduction in biomass. Bioreactor effluent was successfully used to regenerate a wheat hydroponic nutrient solution. Over 80% of available potassium, calcium, and other minerals were recovered and recycled in the 76-day wheat growth experiment.

Finger, Barry W.↗
NASA NTRS1993

Continuous Nanoclimate Data (1985-1988) from the Ross Desert (McMurdo Dry Valleys) Cryptoendolithic Microbial Ecosystem

We have collected year-round nanoclimate data for the cryptoendolithic microbial habitat in sandstones of the Ross desert, Antarctica, obtained with an Argos satellite data system. Data for two sites in the McMurdo Dry Valleys are available: Linnaeus Terrace, January 1985 to June 1988, and Battleship Promontory, 1986-1987. The focus of this research is ecological, and hence year-round environmental data have been obtained for the ambient environment as well as for conditions within the rock. Using data from the summer, we compare the conditions inside the rock to the outside weather. This demonstrates how the rock provides a shelter for the endolithic microbial community. The most important property of the rock is that it absorbs the summer sunlight, thereby warming up to temperatures above freezing. This warming allows snowmelt to seep into the rock, and the moisture level in the rocks can remain high for weeks against loss to the dry environment.

McKay, Christopher P.↗
NASA NTRS1998

Mineralization of Bacteria in Terrestrial Basaltic Rocks: Comparison With Possible Biogenic Features in Martian Meteorite Allan Hills 84001

The identification of biogenic features altered by diagenesis or mineralization is important in determining whether specific features in terrestrial rocks and in meteorites may have a biogenic origin. Unfortunately, few studies have addressed the formation of biogenic features in igneous rocks, which may be important to these phenomena, including the controversy over possible biogenic features in basaltic martian meteorite ALH84001. To explore the presence of biogenic features in igneous rocks, we examined microcosms growing in basaltic small-scale experimental growth chambers or microcosms. Microbial communities were harvested from aquifers of the Columbia River Basalt (CRB) group and grown in a microcosm containing unweathered basalt chips and groundwater (technique described in. These microcosms simulated natural growth conditions in the deep subsurface of the CRB, which should be a good terrestrial analog for any putative martian subsurface ecosystem that may have once included ALH84001. Here we present new size measurements and photomicrographs comparing the putative martian fossils to biogenic material in the CRB microcosms. The range of size and shapes of the biogenic features on the CRB microcosm chips overlaps with and is similar to those on ALH84001 chips. Although this present work does not provide evidence for the biogenicity of ALH84001 features, we believe that, based on criteria of size, shape, and general morphology, a biogenic interpretation for the ALH84001 features remains plausible.

Thomas-Keprta, K. L.↗
NASA NTRS2001

Unexprected Changes in Soil Phosphorus Dynamics Following Tropical Deforestation to Cattle Pasture

Phosphorus (P) is widely believed to limit plant growth and organic matter storage in a large fraction of the world's lowland tropical rainforests. We investigated how the most common land use change in such forests, conversion to cattle pasture, affects soil P fractions along forest to pasture chronosequences in the central Brazilian Amazon and in southwestern Costa Rica. Our sites represent a broad range in rainfall, soil type, management strategies, and total soil P (45.2 - 1228.0 microng P / g soil), yet we found some unexpected and at times strikingly similar changes in soil P in all sites. In the Brazilian sites, where rainfall is relatively low and pasture management is more intense than in the Costa Rican sites, significant losses in total soil P and soil organic carbon (SOC) were seen with pasture age on both fine-textured oxisol and highly sandy entisol soils. However, P losses were largely from occluded, inorganic soil P fractions, while organic forms of soil P remained constant or increased with pasture age, despite the declines in SOC. In Costa Rica, SOC remained constant across the oxisol sites and increased from forest to pasture on the mollisols, while total soil P increased with pasture age in both sequences. The increases in total soil P were largely due to changes in organic P; occluded soil P increased only slightly in the mollisols, and remained unchanged in the older oxisols. We suggest that changes in the composition and/or the primary limiting resources of the soil microbial community may drive the changes in organic P. We also present a new conceptual model for changes in soil P following deforestation to cattle pasture.

Townsend, Alan R.↗
NASA NTRS2000

Controlling Microbial Byproducts using Model-Based Substrate Monitoring and Control Strategies

We have developed a computer-controlled bioreactor system to study various aspects of microbially-mediated nitrogen cycling. The system has been used to investigate methods for controlling microbial denitrification (the dissimilatory reduction of nitrate to N2O and N2) in hydroponic plant growth chambers. Such chambers are key elements of advanced life support systems being designed for use on long duration space missions, but nitrogen use efficiency in them is reduced by denitrification. Control software architecture was designed which permits the heterogeneous control of system hardware using traditional feedback control, and quantitative and qualitative models of various system features. Model-based feed forward control entails prediction of future systems in states and automated regulation of system parameters to achieve desired and avoid undesirable system states. A bacterial growth rate model based on the classic Monod model of saturation kinetics was used to evaluate the response of several individual denitrifying species to varying environmental conditions. The system and models are now being applied to mixed microbial communities harvested from the root zone of a hydroponic growth chamber. The use of a modified Monod organism interaction model was evaluated as a means of achieving more accurate description of the dynamic behavior of the communities. A minimum variance parameter estimation routine was also' used to calibrate the constant parameters in the model by iterative evaluation of substrate (nitrate) uptake and growth kinetics. This representation of processes and interactions aids in the formulation of control laws. The feed forward control strategy being developed will increase system autonomy, reduce crew intervention and limit the accumulation of undesirable waste products (NOx).

Smernoff, David T.↗
NASA NTRS1994

Subsurface Intertidal Microbes: A Cryptic Source Of Organic Carbon For Beach Ecosystems

Some freshwater, marine or hotspring beaches have no visible source of primary production, yet beneath the surface is an interstitial photosynthetic microbial community. To assess the significance of this source of organic carbon, we measured in situ carbon fixation rates in an intertidal marine beach through a diurnal cycle. Gross fixation for a transect (99 x 1 m) perpendicular to the shore was approx. 4041 mg C fixed/ day, or approx. 41 mg C fixed/ sq m day. In contrast, an adjacent well-established cyanobacterial (Lyngbya) mat was approx. 12 x as productive (approx. 490 mg C fixed/sq m day). Thus, subsurface sand mats may be an overlooked, yet important, endogenous source of organic carbon for intertidal ecosystems, as well as a sink in the global carbon cycle.

Rothschild, Lynn J.↗
NASA NTRS2002

Carbonate Platform Development and Stromatolite Morphogenesis: Constraints on Environmental and Biological Evolution

Work this past year has focused on the globally significant events of faunal turnover, tectonic reorganization, and biogeochemical change that closely coincided with the Precambrian-Cambrian boundary in the Sultanate oilman. Higher temporal and chronostratigraphic resolution are required in order to answer this question. Stratigraphic sections must contain fossils, volcanic rocks, and abundant carbonates with little or no diagenetic overprint. The Ara Group of the South Oman Salt Basin presents such a succession - with carbonate rocks tightly enclosed in a protective envelope of impermeable halite, these rocks have likely never exchanged with younger fluids. Our work has had two thrusts. The first pertains to the geochemistry of the Athel Formation, a deep water deposit formed at the Precambrian-Cambrian boundary which contains unique records of ocean anoxia for that time interval. This unit is important because it will enable tighter focus on the links which existed between global biogeochemical events and episodes of faunal extinction and radiation. The second direction involves a comparison of terminal Proterozoic thrombolites between Oman (subsurface) and Namibia (outcrop). These thrombolites are important not only as significant deposits of ancient microbial communities, but because they formed the key substrate for growth of the oldest calcified metazoans - Cloudina and Namacalathus.

Grotzinger, John P.↗
NASA NTRS2002

Ultramafic Terranes and Associated Springs as Analogs for Mars and Early Earth

Putative extinct or extant Martian organisms, like their terrestrial counterparts, must adopt metabolic strategies based on the environments in which they live. In order for organisms to derive metabolic energy from the natural environment (Martian or terrestrial), a state of thermodynamic disequilibrium must exist. The most widespread environment of chemical disequilibrium on present-day Earth results from the interaction of mafic rocks of the ocean crust with liquid water. Such environments were even more pervasive and important on the Archean Earth due to increased geothermal heat flow and the absence of widespread continental crust formation. The composition of the lower crust and upper mantle of the Earth is essentially the-same as that of Mars, and the early histories of these two planets are similar. It follows that a knowledge of the mineralogy, water-rock chemistry and microbial ecology of Earth's oceanic crust could be of great value in devising a search strategy for evidence of past or present life on Mars. In some tectonic regimes, cross-sections of lower oceanic crust and upper mantle are exposed on land as so-called "ophiolite suites." Such is the case in the state of California (USA) as a result of its location adjacent to active plate margins. These mafic and ultramafic rocks contain numerous springs that offer an easily accessible field laboratory for studying water/rock interactions and the microbial communities that are supported by the resulting geochemical energy. A preliminary screen of Archaean biodiversity was conducted in a cold spring located in a presently serpentinizing ultramafic terrane. PCR and phylogenetic analysis of partial 16s rRNA, sequences were performed on water and sediment samples. Archaea of recent phylogenetic origin were detected with sequences nearly identical to those of organisms living in ultra-high pH lakes of Africa.

Blake, David↗
NASA NTRS2002

Energy Requirements of Hydrogen-Utilizing Microbes: Boundary Condition for Subsurface Life

For planetary bodies with surface conditions that are too harsh to permit continuous occupation by life, the deep subsurface offers a potentially stable and habitable niche. For organisms occupying this niche, the spectrum of possible metabolisms must be limited to those which do not include sunlight as an energy source or oxygen as a chemical reagent - generally, low-energy anaerobic oxidation-reduction processes. The quantity of energy released in such processes is critical, because currently understood mechanisms of biological energy conservation indicate that energy is only 'useful' to an organism when it is available at a certain minimum level - the 'biological energy quantum'. The mere existence of a BEQ implies that a significant fraction of the chemical energy present in the environment cannot be exploited by life; similarly, the absolute magnitude of the BEQ must be a key variable in determining the potential viability and distribution of subsurface microbial communities. Laboratory culture studies suggest that organisms require an energy of about -20 kJ/mol to grow. However, we find that hydrogen-utilizing microorganisms in an energy-limited natural ecosystem are active with energy yields as low as -10 kJ/mol. A lower BEQ would mean a significantly expanded range of energetically viable subsurface habitat for life.

Hoehler, Tori M.↗
NASA NTRS2003

A Case for Microorganisms on Comets, Europa and the Polar Ice Caps of Mars

Microbial extremophiles live on Earth wherever there is liquid water and a source of energy. Observations by ground-based observatories, space missions, and satellites have provided strong evidence that water ice exists today on comets, Europa, Callisto, and Ganymede and in the snow, permafrost, glaciers and polar ice caps of Mars. Studies of the cryoconite pools and ice bubble systems of Antarctica suggest that solar heating of dark rocks entrained in ice can cause localized melting of ice providing ideal conditions for the growth of microbial communities with the creation of micro-environments where trapped metabolic gasses produce entrained isolated atmospheres as in the Antarctic ice-bubble systems. It is suggested that these considerations indicate that several groups of microorganisms should be capable of episodic growth within liquid water envelopes surrounding dark rocks in cometary ices and the permafrost and polar caps of Mars. We discuss some of the types of microorganisms we have encountered within the permafrost and snow of Siberia, the cryoconite pools of Alaska, and frozen deep within the Antarctic ice sheet above Lake Vostok.

Hoover, Richard B.↗
NASA NTRS2004

Searching for an Acidic Aquifer in the Rio Tinto Basin: First Geobiology Results of MARTE Project

Among the conceivable modern habitats to be explored for searching life on Mars are those potentially developed underground. Subsurface habitats are currently environments that, under certain physicochemical circumstances, have high thermal and hydrochemical stability [1, 2]. In planets like Mars lacking an atmospheric shield, such systems are obviously protected against radiation, which strongly alters the structure of biological macromolecules. Low porosity but fractured aquifers currently emplaced inside ancient volcano/sedimentary and hydrothermal systems act as excellent habitats [3] due to its thermal and geochemical properties. In these aquifers the temperature is controlled by a thermal balance between conduction and advection processes, which are driven by the rock composition, geological structure, water turnover of aquifers and heat generation from geothermal processes or chemical reactions [4]. Moreover, microbial communities based on chemolithotrophy can obtain energy by the oxidation of metallic ores that are currently associated to these environments. Such a community core may sustain a trophic web composed of non-autotrophic forms like heterotrophic bacteria, fungi and protozoa.

Fernandez-Remolar, D. C.↗
NASA NTRS2003

Microbial characterization of the Mars Odyssey spacecraft and its encapsulation facility

Microbial characterization of the Mars Odyssey spacecraft and the Kennedy Space Center Spacecraft Assembly and Encapsulation Facility II (SAEF-II) was carried out by both culture-based and molecular methods. The most dominant cultivable microbes were species of Bacillus, with comamonads, microbacteria and actinomycetales also represented. Several spore-forming isolates were resistant to gamma-radiation, UV, H2O2 and desiccation, and one Acinetobacter radioresistens isolate and several Aureobasidium, isolated directly from the spacecraft, survived various conditions. Sequences arising in clone libraries were fairly consistent between the spacecraft and facility; predominant genera included Variovorax, Ralstonia and Aquaspirillum. This study improves our understanding of the microbial community structure, diversity and survival capabilities of microbes in an encapsulation facility and physically associated with colocated spacecraft.

Spacecraft↗
NASA NTRS2003

Stable carbon isotope fractionation by sulfate-reducing bacteria

Biogeochemical transformations occurring in the anoxic zones of stratified sedimentary microbial communities can profoundly influence the isotopic and organic signatures preserved in the fossil record. Accordingly, we have determined carbon isotope discrimination that is associated with both heterotrophic and lithotrophic growth of pure cultures of sulfate-reducing bacteria (SRB). For heterotrophic-growth experiments, substrate consumption was monitored to completion. Sealed vessels containing SRB cultures were harvested at different time intervals, and delta(13)C values were determined for gaseous CO(2), organic substrates, and products such as biomass. For three of the four SRB, carbon isotope effects between the substrates, acetate or lactate and CO(2), and the cell biomass were small, ranging from 0 to 2 per thousand. However, for Desulfotomaculum acetoxidans, the carbon incorporated into biomass was isotopically heavier than the available substrates by 8 to 9 per thousand. SRB grown lithoautotrophically consumed less than 3% of the available CO(2) and exhibited substantial discrimination (calculated as isotope fractionation factors [alpha]), as follows: for Desulfobacterium autotrophicum, alpha values ranged from 1.0100 to 1.0123; for Desulfobacter hydrogenophilus, the alpha value was 0.0138, and for Desulfotomaculum acetoxidans, the alpha value was 1.0310. Mixotrophic growth of Desulfovibrio desulfuricans on acetate and CO(2) resulted in biomass with a delta(13)C composition intermediate to that of the substrates. The extent of fractionation depended on which enzymatic pathways were used, the direction in which the pathways operated, and the growth rate, but fractionation was not dependent on the growth phase. To the extent that environmental conditions affect the availability of organic substrates (e.g., acetate) and reducing power (e.g., H(2)), ecological forces can also influence carbon isotope discrimination by SRB.

Deltaproteobacteria/growth & development/metabolis↗
NASA NTRS2002

Parallel characterization of anaerobic toluene- and ethylbenzene-degrading microbial consortia by PCR-denaturing gradient gel electrophoresis, RNA-DNA membrane hybridization, and DNA microarray technology

A mesophilic toluene-degrading consortium (TDC) and an ethylbenzene-degrading consortium (EDC) were established under sulfate-reducing conditions. These consortia were first characterized by denaturing gradient gel electrophoresis (DGGE) fingerprinting of PCR-amplified 16S rRNA gene fragments, followed by sequencing. The sequences of the major bands (T-1 and E-2) belonging to TDC and EDC, respectively, were affiliated with the family Desulfobacteriaceae. Another major band from EDC (E-1) was related to an uncultured non-sulfate-reducing soil bacterium. Oligonucleotide probes specific for the 16S rRNAs of target organisms corresponding to T-1, E-1, and E-2 were designed, and hybridization conditions were optimized for two analytical formats, membrane and DNA microarray hybridization. Both formats were used to characterize the TDC and EDC, and the results of both were consistent with DGGE analysis. In order to assess the utility of the microarray format for analysis of environmental samples, oil-contaminated sediments from the coast of Kuwait were analyzed. The DNA microarray successfully detected bacterial nucleic acids from these samples, but probes targeting specific groups of sulfate-reducing bacteria did not give positive signals. The results of this study demonstrate the limitations and the potential utility of DNA microarrays for microbial community analysis.

Non-NASA Center↗
NASA NTRS1988

Mychonastes desiccatus Brown sp. nova (Chlorococcales, Chlorophyta)--an intertidal alga forming achlorophyllous desiccation-resistant cysts

An intertidal Chlorella-like alga Mychonastes desiccatus Brown sp. nova, capable of forming achlorophyllous desiccation-resistant cysts, has been grown in unialgal culture. This small alga was first isolated from a dried sample of a well-studied microbial mat. The mat, located at North Pond, Laguna Figueroa, San Quintin, Baja California, Mexico, is a vertically-stratified microbial community which forms laminated sediments. Morphology, pigment composition and G+C content are within the range typical for the genus Chlorella s. 1. Unlike other chlorellae, however, upon desiccation M. desiccatus forms an achlorophyllous, lipid-filled cyst (thick-walled resting stage) in which no plastid is evident. Rewetting leads to chloroplast differentiation, excystment and recovery of the fully green alga. During desiccation, sporopollenin is deposited within a thickening cell wall. Encystment cannot be induced by growth in the dark. The formation of desiccation-induced cysts allows the alga to survive frequent and intermittent periods of dryness. These chlorellae tolerate wide ranges of acidity and temperature; they both grow and form cysts in media in which sodium ions are replaced with potassium. Although the cysts tolerate crystalline salts, the cell grow optimally in concentrations corresponding from three-quarters to full-strength seawater.

NASA Discipline Exobiology↗
NASA NTRS1987

Symbiont acquisition as neoseme: origin of species and higher taxa

We examine the hypothesis that, in the origin of species and higher taxa of eukaryotes, symbiont acquisition followed by partner integration has been equivalent to neoseme appearance leading to speciation. The formation of stable symbiotic associations involves partner-surface recognition, behavioral and metabolic interaction, and, in some cases, gene product (RNA, protein) and genic (RNA, DNA) integration. This analysis is applied here to examples of neosemes that define specific taxa and to neosemes in plants, fungi, and animals that involve the appearance of new types of tissue. If this hypothesis is correct--if the origin of major genetic variation leading to speciation and even higher taxa may occur through symbiont acquisition and integration--then the analysis of "origins of species and higher taxa" becomes analogous to the study of microbial community ecology.

NASA Discipline Exobiology↗
NASA NTRS1994

Microfossils in cherts from the Middle Riphean (Mesoproterozoic) Avzyan Formation, southern Ural Mountains, Russian Federation

A diverse assemblage of well-preserved microorganisms has been detected in black cherts from the approximately 1200 Ma-old Avzyan Formation (Suite) of the southern Ural Mountains, Russian Federation. The lower Kataskin Member contains a diverse, abundant microbiota dominated by mat-forming filamentous cyanobacteria, several types of colonial unicells, and morphologically distinctive stalked cyanobacteria. The upper Revet Member contains a less diverse biota dominated by unicellular cyanobacteria. Palaeoecological evidence indicates that the microbial community of the Kataskin Member inhabited a shallow water, presumably marine, carbonate environment. Revet microorganisms possibly lived in restricted peritidal environments. The biostratigraphic significance of the Avzyan microbiota is limited. Many of the taxa are long-ranging; they were already abundant in Palaeoproterozoic successions and continue into the Neoproterozoic. Nevertheless, in many respects, the Kataskin assemblage is comparable to those reported from the Middle-Late Riphean deposits of Northern America, Australia and Eurasia. The following taxa are here described: Chroococcaceae-Eogloeocapsa avzyanica Sergeev, Gloeodiniopsis lamellosa Schopf emend. Knoll et Golubic; Entophysalidaceae-Eoentophysalis belcherensis Hofmann; Dermocarpaceae-Polybessurus bipartitus Fairchild ex Green et al.; Nostocaceae-Eosphaeronostoc kataskinicum Sergeev; Nostocaceae or Oscillatoriaceae-Siphonophycus robustum (Schopf) emend. Knoll et Golubic emend. Knoll et al., Siphonophycus sp.; Incertae sedis-Eosynechococcus amadeus Knoll et Golubic.

Non-NASA Center↗