Detection of marine organisms by an infrared mapper
Detection of marine organisms by infrared mapping device - oceanography
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Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.
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Some applications of radar return data to the study of terrestrial and oceanic phenomena
Side-looking radar spacecraft application to mapping, imagery, altimetry, geology, pedology, glaciology, agriculture, and oceanography
SIDE-LOOKING RADAR↗
Peaceful uses of earth-observation spacecraft. Volume II - Survey of applications and benefits
Satellite observations for geography, geology, air pollution, oceanography, forestry and water resources, and fisheries and wildlife
GEOGRAPHY↗
Intial orbit determination results for Jason-1: towards a 1-cm orbit
The U.S/France Jason-1 oceanographic mission is carrying state-of-the-art radiometric tracking systems (GPS and Doris) to support precise orbit determination (POD) requirements. The performance of the systems is strongly reflected in the early POD results. Results of both internal and external (e.g., satellite laser ranging) comparisons support that the 2.5 cm radial Rh4S requirement is being readily met, and provide reasons for optimism that 1 cm can be achieved. We discuss the POD strategy underlying these orbits, as well as the challenging issues that bear on the understanding and characterization of an orbit solution at the l-cm level. We also describe a system for producing science quality orbits in near real time in order to support emerging applications in operational oceanography.
Jason-1 oceanography orbits real time↗
Higher Order Cumulant Studies of Ocean Surface Random Fields from Satellite Altimeter Data
Higher order statistics, especially 2nd order statistics, have been used to study ocean processes for many years in the past, and occupy an appreciable part of the research literature on physical oceanography. They in turn form part of a much larger field of study in statistical fluid mechanics.
applied statistical oceanography↗
Ocean Surface Topography Data Products and Tools
The Physical Oceanography Distributed Active Archiving Center (PO.DAAC), NASA's primary data center for archiving and distributing oceanographic data, is supporting the Jason and TOPEX/Poseidon satellite tandem missions by providing a variety of data products, tools, and distribution methods to the wider scientific and general community. PO.DAAC has developed several new data products for sea level residual measurements, providing a longterm climate data record from 1992 to the present These products provide compatible measurements of sea level residuals for the entire time series including the tandem TOPEX/Poseidon and Jason mission. Several data distribution tool. are available from NASA PO.DAAC. The Near-Real-Time Image Distribution Server (NEREIDS) provides quicklook browse images and binary data files The PO.DAAC Ocean ESIP Tool (POET) provides interactive, on-tine data subsetting and visualization for several altimetry data products.
Jason 1↗
Ocean Surface Vector Wind: Research Challenges and Operational Opportunities
The atmosphere and ocean are joined together over seventy percent of Earth, with ocean surface vector wind (OSVW) stress one of the linkages. Satellite OSVW measurements provide estimates of wind divergence at the bottom of the atmosphere and wind stress curl at the top of the ocean; both variables are critical for weather and climate applications. As is common with satellite measurements, a multitude of OSVW data products exist for each currently operating satellite instrument. In 2012 the Joint Technical Commission on Oceanography and Marine Meteorology (JCOMM) launched an initiative to coordinate production of OSVW data products to maximize the impact and benefit of existing and future OSVW measurements in atmospheric and oceanic applications. This paper describes meteorological and oceanographic requirements for OSVW data products; provides an inventory of unique data products to illustrate that the challenge is not the production of individual data products, but the generation of harmonized datasets for analysis and synthesis of the ensemble of data products; and outlines a vision for JCOMM, in partnership with other international groups, to assemble an international network to share ideas, data, tools, strategies, and deliverables to improve utilization of satellite OSVW data products for research and operational applications.
Joint Technical Commission on Oceanography and Mar↗
Discriminating Phytoplankton Functional Types (PFTs) in the Coastal Ocean Using the Inversion Algorithm Phydotax and Airborne Imaging Spectrometer Data
There is a need in the Biological Oceanography community to discriminate among phytoplankton groups within the bulk chlorophyll pool to understand energy flow through ecosystems, to track the fate of carbon in the ocean, and to detect and monitor-for harmful algal blooms (HABs). The ocean color community has responded to this demand with the development of phytoplankton functional type (PFT) discrimination algorithms. These PFT algorithms fall into one of three categories depending on the science application: size-based, biogeochemical function, and taxonomy. The new PFT algorithm Phytoplankton Detection with Optics (PHYDOTax) is an inversion algorithm that discriminates taxon-specific biomass to differentiate among six taxa found in the California Current System: diatoms, dinoflagellates, haptophytes, chlorophytes, cryptophytes, and cyanophytes. PHYDOTax was developed and validated in Monterey Bay, CA for the high resolution imaging spectrometer, Spectroscopic Aerial Mapping System with On-board Navigation (SAMSON - 3.5 nm resolution). PHYDOTax exploits the high spectral resolution of an imaging spectrometer and the improved spatial resolution that airborne data provides for coastal areas. The objective of this study was to apply PHYDOTax to a relatively lower resolution imaging spectrometer to test the algorithm's sensitivity to atmospheric correction, to evaluate capability with other sensors, and to determine if down-sampling spectral resolution would degrade its ability to discriminate among phytoplankton taxa. This study is a part of the larger Hyperspectral Infrared Imager (HyspIRI) airborne simulation campaign which is collecting Airborne Visible/Infrared Imaging Spectrometer (AVIRIS) imagery aboard NASA's ER-2 aircraft during three seasons in each of two years over terrestrial and marine targets in California. Our aquatic component seeks to develop and test algorithms to retrieve water quality properties (e.g. HABs and river plumes) in both marine and in-land water bodies. Results presented are from the 10 April 2013 overflight of the Monterey Bay region and focus primarily on the first objective - sensitivity to atmospheric correction. On-going and future work will continue to evaluate if PHYDOTax can be applied to historical (SeaWiFS and MERIS), existing (MODIS, VIIRS, and HICO), and future (PACE, GEO-CAPE, and HyspIRI) satellite sensors. Demonstration of cross-platform continuity may aid in calibration and validation efforts of these sensors.
Biological Oceanography↗
(abstract) SIR-C/X-SAR: A Multifaceted Radar
The Spaceborne Imaging Radar-C/X-band Synthetic Aperture Radar (SAR-C/X-SAR) was a joint US/German/Italian project, with flights aboard the shuttle Endeavor in April and October 1994. SIR-C/X-SAR is the first spaceborne multifrequency, multipolarization radar. The SIR-C and the X-SAR were designed to operate in conjunction with each other, collecting data over common sites. Scientists around the world are using the data in conjunction with ground measurements to conduct experiments relating to Earth's ecology, geology, hydrology, and oceanography. In addition, the data are the most comprehensive set yet available for engineering characterization of spaceborne SAR capabilities relative to various radar phenomenology and methodology. Preliminary results show changes between missions in vegetation, ice, snow, flooding, and volcano activity.
imaging↗
Visualisation and outlier detection for probability density function ensembles
Abstract Exploratory data analysis (EDA) for functional data—data objects where observations are entire functions—is a difficult problem that has seen significant attention in recent literature. This surge in interest is motivated by the ubiquitous nature of functional data, which are prevalent in applications across fields such as meteorology, biology, medicine and engineering. Empirical probability density functions (PDFs) can be viewed as constrained functional data objects that must integrate to one and be nonnegative. They show up in contexts such as yearly income distributions, zooplankton size structure in oceanography and in connectivity patterns in the brain, among others. While PDF data are certainly common in modern research, little attention has been given to EDA specifically for PDFs. In this paper, we extend several methods for EDA on functional data for PDFs and compare them on simulated data that exhibit different types of variation, designed to mimic that seen in real‐world applications. We then use our new methods to perform EDA on the breakthrough curves observed in gas transport simulations for underground fracture networks.
97 MATHEMATICS AND COMPUTING↗
MITgcm-AD v2: Open source tangent linear and adjoint modeling framework for the oceans and atmosphere enabled by the Automatic Differentiation tool Tapenade
The Massachusetts Institute of Technology General Circulation Model (MITgcm) is widely used by the climate science community to simulate planetary atmosphere and ocean circulations. A defining feature of the MITgcm is that it has been developed to be compatible with an algorithmic differentiation (AD) tool, TAF, enabling the generation of tangent-linear and adjoint models. These provide gradient information which enables dynamics-based sensitivity and attribution studies, state and parameter estimation, and rigorous uncertainty quantification. Importantly, gradient information is essential for computing comprehensive sensitivities and performing efficient large-scale data assimilation, ensuring that observations collected from satellites and in-situ measuring instruments can be effectively used to optimize a large uncertain control space. As a result, the MITgcm forms the dynamical core of a key data assimilation product employed by the physical oceanography research community: Estimating the Circulation and Climate of the Ocean (ECCO) state estimate. Although MITgcm and ECCO are used extensively within the research community, the AD tool TAF is proprietary and hence inaccessible to a large proportion of these users. The new version 2 (MITgcm-AD v2) framework introduced here is based on the source-to-source AD tool Tapenade, which has recently been open-sourced. Another feature of Tapenade is that it stores required variables by default (instead of recomputing them) which simplifies the implementation of efficient, AD-compatible code. The framework has been integrated with the MITgcm model’s main branch and is now freely available.
Adjoints↗
Citation for the 2019 Victor M. Goldschmidt award to Donald J. DePaolo
Perhaps the comments most commonly heard when a colleague receives professional recognition are “well-deserved” and “long-overdue”. As such, it is my pleasure to introduce Donald DePaolo as the recipient of this year’s Goldschmidt Award as it is both long-overdue and so well-deserved. While Don has received many honors over the course of his career, the Goldschmidt best recognizes his broad impact on geochemistry. There are few who have contributed as much to geochemistry as Don DePaolo. Finally, his scientific contributions are voluminous and broad, ranging from pioneering efforts to establish the Sm/Nd isotopic system, and its applications to mantle evolution and basalt petrogenesis, to studies of magma mixing, assimilation and crystal fractionation, to evolution of the lower crust and granite petrogenesis, to chemical oceanography, diagenesis and seafloor alteration, to reactive transport accompanying rock-water interaction, and to kinetic isotopic fractionation associated with crystal growth, diffusion and evaporation.
58 GEOSCIENCES↗
Debunking common myths in coastal circulation modeling
Despite tremendous progress in algorithm development, computational efficiency and transition into operations over the past two decades, coastal modeling still lacks scientific rigor due to proliferation of many ‘gray’ areas related to various modeling choices made by modelers. Here, in this paper, we propose some guiding principles for the modeling community to improve performance, and we also debunk commonly held myths that make the coastal modeling lack rigor. Using our own experience in developing seamless cross-scale unstructured-grid based models for the past two decades, we describe in unprecedented detail the end-to-end modeling process (i.e., from digital elevation models (DEMs) to mesh generation to post analysis), and demonstrate that defensible modeling is within reach for any end user by following three guiding principles: (1) Bathymetry is a first order forcing in coastal domains and thus should be respected in all aspects of modeling; (2) Oceanographic processes are driven across multiple spatial scales and so models should enable appropriate resolution as needed; and (3) Model assessment should focus on physical processes. Through qualitative and quantitative model assessments, we demonstrate the fundamental role played by bathymetry/topography as embedded in DEMs in making the results defensible, which is unfortunately glossed over in many modeling studies. Focusing on process-based assessment simplifies the calibration process. A major conclusion of this work is that model developers and operators should maximize the scientific rigor for in silico oceanography by avoiding some common pitfalls that rely on error compensation at the expense of representation of physical system processes. We present some best practice procedures for defensive and trustworthy numerical modeling.
54 ENVIRONMENTAL SCIENCES↗
Author Correction: Microbial Metagenomes Across a Complete Phytoplankton Bloom Cycle: High-Resolution Sampling Every 4 Hours Over 22 Days
In the version of this article initially published, two errors in authorship were made. First, Tatiana Rynearson of the School of Oceanography, University of Rhode Island was mistakenly omitted from the final author list. Second, Kurt LaButti of the Joint Genome Institute was mistakenly omitted from the final author list and replaces Alicia Clum due to a staffing change at the Joint Genome Institute. These authorship omissions were not identified until after the work had been published. We are updating the authorship to appropriately recognize the contributions of these authors. The error has been corrected in the PDF and HTML versions of the article.
59 BASIC BIOLOGICAL SCIENCES↗
Data and scripts associated with "Coupled primary production and respiration in a large river contrasts with smaller rivers and streams."
This data package is associated with the publication "Coupled primary production and respiration in a large river contrasts with smaller rivers and streams." in review at Limnology and Oceanography (Roley et al. 2023). This study focuses on understanding ecosystem metabolism for the Hanford Reach of the Columbia River in Washington state, a free-flowing stretch with a substantial discharge. Large rivers have been overlooked compared to small and medium rivers due to the challenges associated with measurements. Our study presents novel ways to address these challenges and highlights that metabolism patterns in large rivers differ from those observed in small-medium rivers and requires the application of knowledge and tools beyond those implemented for smaller rivers.This data package includes the data and R scripts for the analyses described in Roley et al. 2023. It includes dissolved oxygen and temperature data from a dissolved oxygen HOBO sensor, light data collected from the National Solar Radiation Database (https://nsrdb.nrel.gov/) and hydrologic variables estimated from the MASS-1 model (Niehus et al.; 2014). It also includes metabolism estimates (gross primary production, ecosystem respiration, and net ecosystem production) estimated via streamMetabolizer (Appling et al.; 2018). All analyses in the paper can be replicated with these data and scripts.The data package is comprised of one main data folder. The folder includes (1) file-level metadata (flmd); (2) a data dictionary (dd) for each data file; (3) data files; and (4) R scripts for metabolism estimates and data analysis. All files are .R, .csv, or .pdf.
54 ENVIRONMENTAL SCIENCES↗
Data and scripts associated with a manuscript investigating impacts of solid phase extraction on freshwater organic matter optical signatures and mass spectrometry pairing
This data package is associated with the publication “Investigating the impacts of solid phase extraction on dissolved organic matter optical signatures and the pairing with high-resolution mass spectrometry data in a freshwater system” submitted to “Limnology and Oceanography: Methods.” This data is an extension of the River Corridor and Watershed Biogeochemistry SFA’s Spatial Study 2021 (https://doi.org/10.15485/1898914). Other associated data and field metadata can be found at the link provided. The goal of this manuscript is to assess the impact of solid phase extraction (SPE) on the ability to pair ultra-high resolution mass spectrometry data collected from SPE extracts with optical properties collected on ambient stream samples. Forty-seven samples collected from within the Yakima River Basin, Washington were analyzed dissolved organic carbon (DOC, measured as non-purgeable organic carbon, NPOC), absorbance, and fluorescence. Samples were subsequently concentrated with SPE and reanalyzed for each measurement. The extraction efficiency for the DOC and common optical indices were calculated. In addition, SPE samples were subject to ultra-high resolution mass spectrometry and compared with the ambient and SPE generated optical data. Finally, in addition to this cross-platform inter-comparison, we further performed and intra-comparison among the high-resolution mass spectrometry data to determine the impact of sample preparation on the interpretability of results. Here, the SPE samples were prepared at 40 milligrams per liter (mg/L) based on the known DOC extraction efficiency of the samples (ranging from ~30 to ~75%) compared to the common practice of assuming the DOC extraction efficiency of freshwater samples at 60%. This data package folder consists of one main data folder with one subfolder (Data_Input). The main data folder contains (1) readme; (2) data dictionary (dd); (3) file-level metadata (flmd); (4) final data summary output from processing script; and (5) the processing script. The R-markdown processing script (SPE_Manuscript_Rmarkdown_Data_Package.rmd) contains all code needed to reproduce manuscript statistics and figures (with the exception of that stated below). The Data_Input folder has two subfolders: (1) FTICR and (2) Optics. Additionally, the Data_Input folder contains dissolved organic carbon (DOC, measured as non-purgeable organic carbon, NPOC) data (SPS_NPOC_Summary.csv) and relevant supporting Solid Phase Extraction Volume information (SPS_SPE_Volumes.csv). Methods information for the optical and FTICR data is embedded in the header rows of SPS_EEMs_Methods.csv and SPS_FTICR_Methods.csv, respectively. In addition, the data dictionary (SPS_SPE_dd.csv), file level metadata (SPS_SPE_flmd.csv), and methods codes (SPS_SPE_Methods_codes.csv) are provided. The FTICR subfolder contains all raw FTICR data as well as instructions for processing. In addition, post processed FTICR molecular information (Processed_FTICRMS_Mol.csv) and sample data (Processed_FTICRMS_Data.csv) is provided that can be directly read into R with the associated R-markdown file. The Optics subfolder contains all Absorbance and Fluorescence Spectra. Fluorescence spectra have been blank corrected, inner filter corrected, and undergone scatter removal. In addition, this folder contains Matlab code used to make a portion of Figure 1 within the manuscript, derive various spectral parameters used within the manuscript, and used for parallel factor analysis (PARAFAC) modeling. Spectral indices (SPS_SpectralIndices.csv) and PARAFAC outputs (SPS_PARAFAC_Model_Loadings.csv and SPS_PARAFAC_Sample_Scores.csv) are directly read into the associated R-markdown file. We acknowledge the Yakama Nation as owners and caretakers of the lands where we collected some of these data. We thank the Confederated Tribes and Bands of the Yakama Nation Tribal Council and Yakama Nation Fisheries for working with us to facilitate sample collection and optimization of data usage according to their values and worldview.
54 ENVIRONMENTAL SCIENCES↗